Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23230 and RR42_RS23235 are separated by 124 nucleotides RR42_RS23235 and RR42_RS23240 are separated by 187 nucleotides
RR42_RS23230: RR42_RS23230 - glycerate kinase, at 543,164 to 544,354
_RS23230
RR42_RS23235: RR42_RS23235 - tartronate semialdehyde reductase, at 544,479 to 545,339
_RS23235
RR42_RS23240: RR42_RS23240 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 545,527 to 546,318
_RS23240
Position (kb) 544
545
546 Strain fitness (log2 ratio) -1
0
1
2 at 543.519 kb on - strand, within RR42_RS23230 at 543.519 kb on - strand, within RR42_RS23230 at 544.348 kb on + strand at 544.348 kb on + strand at 545.383 kb on + strand at 545.467 kb on + strand at 545.467 kb on + strand at 545.468 kb on - strand at 545.468 kb on - strand at 545.468 kb on - strand at 545.532 kb on - strand at 545.532 kb on - strand at 545.814 kb on + strand, within RR42_RS23240 at 545.816 kb on + strand, within RR42_RS23240 at 545.816 kb on + strand, within RR42_RS23240 at 545.939 kb on + strand, within RR42_RS23240 at 545.939 kb on + strand, within RR42_RS23240 at 545.940 kb on - strand, within RR42_RS23240 at 545.940 kb on - strand, within RR42_RS23240 at 545.940 kb on - strand, within RR42_RS23240 at 545.940 kb on - strand, within RR42_RS23240 at 546.053 kb on + strand, within RR42_RS23240 at 546.053 kb on + strand, within RR42_RS23240 at 546.053 kb on + strand, within RR42_RS23240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 543,519 - RR42_RS23230 0.30 +0.4 543,519 - RR42_RS23230 0.30 +1.0 544,348 + +0.0 544,348 + +0.4 545,383 + -0.4 545,467 + -0.8 545,467 + +0.0 545,468 - -0.2 545,468 - +1.1 545,468 - -0.2 545,532 - -0.3 545,532 - +0.4 545,814 + RR42_RS23240 0.36 +0.3 545,816 + RR42_RS23240 0.36 -0.4 545,816 + RR42_RS23240 0.36 -0.1 545,939 + RR42_RS23240 0.52 -0.2 545,939 + RR42_RS23240 0.52 -0.8 545,940 - RR42_RS23240 0.52 +1.9 545,940 - RR42_RS23240 0.52 +0.4 545,940 - RR42_RS23240 0.52 -1.4 545,940 - RR42_RS23240 0.52 -0.6 546,053 + RR42_RS23240 0.66 -0.8 546,053 + RR42_RS23240 0.66 -0.7 546,053 + RR42_RS23240 0.66 +0.3
Or see this region's nucleotide sequence