Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22230

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22220 and RR42_RS22225 overlap by 4 nucleotidesRR42_RS22225 and RR42_RS22230 overlap by 4 nucleotidesRR42_RS22230 and RR42_RS22235 are separated by 16 nucleotides RR42_RS22220: RR42_RS22220 - cytochrome o ubiquinol oxidase subunit III, at 324,328 to 324,984 _RS22220 RR42_RS22225: RR42_RS22225 - cytochrome C oxidase subunit III, at 324,981 to 325,388 _RS22225 RR42_RS22230: RR42_RS22230 - hypothetical protein, at 325,385 to 326,239 _RS22230 RR42_RS22235: RR42_RS22235 - peptidase M19, at 326,256 to 326,885 _RS22235 Position (kb) 325 326 327Strain fitness (log2 ratio) -2 -1 0 1at 324.398 kb on + strand, within RR42_RS22220at 324.398 kb on + strand, within RR42_RS22220at 324.399 kb on - strand, within RR42_RS22220at 324.399 kb on - strand, within RR42_RS22220at 324.406 kb on + strand, within RR42_RS22220at 324.460 kb on + strand, within RR42_RS22220at 324.461 kb on - strand, within RR42_RS22220at 324.461 kb on - strand, within RR42_RS22220at 324.505 kb on + strand, within RR42_RS22220at 324.506 kb on - strand, within RR42_RS22220at 324.506 kb on - strand, within RR42_RS22220at 324.614 kb on - strand, within RR42_RS22220at 324.614 kb on - strand, within RR42_RS22220at 324.718 kb on + strand, within RR42_RS22220at 324.718 kb on + strand, within RR42_RS22220at 324.719 kb on - strand, within RR42_RS22220at 324.719 kb on - strand, within RR42_RS22220at 324.962 kb on - strandat 325.071 kb on - strand, within RR42_RS22225at 325.087 kb on - strand, within RR42_RS22225at 325.087 kb on - strand, within RR42_RS22225at 325.225 kb on + strand, within RR42_RS22225at 325.225 kb on + strand, within RR42_RS22225at 325.225 kb on + strand, within RR42_RS22225at 325.226 kb on - strand, within RR42_RS22225at 325.228 kb on - strand, within RR42_RS22225at 325.228 kb on - strand, within RR42_RS22225at 325.228 kb on - strand, within RR42_RS22225at 325.239 kb on - strand, within RR42_RS22225at 325.976 kb on + strand, within RR42_RS22230at 326.082 kb on - strand, within RR42_RS22230at 326.133 kb on - strand, within RR42_RS22230at 326.173 kb on + strandat 326.371 kb on + strand, within RR42_RS22235at 326.372 kb on - strand, within RR42_RS22235at 326.659 kb on + strand, within RR42_RS22235at 326.659 kb on + strand, within RR42_RS22235at 326.659 kb on + strand, within RR42_RS22235at 326.659 kb on + strand, within RR42_RS22235at 326.660 kb on - strand, within RR42_RS22235at 326.660 kb on - strand, within RR42_RS22235at 326.827 kb on + strandat 326.828 kb on - strandat 326.828 kb on - strandat 327.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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324,398 + RR42_RS22220 0.11 -0.3
324,398 + RR42_RS22220 0.11 +0.2
324,399 - RR42_RS22220 0.11 +0.4
324,399 - RR42_RS22220 0.11 -1.1
324,406 + RR42_RS22220 0.12 -0.6
324,460 + RR42_RS22220 0.20 -0.5
324,461 - RR42_RS22220 0.20 +0.6
324,461 - RR42_RS22220 0.20 +0.2
324,505 + RR42_RS22220 0.27 -1.3
324,506 - RR42_RS22220 0.27 -0.0
324,506 - RR42_RS22220 0.27 -0.0
324,614 - RR42_RS22220 0.44 +0.4
324,614 - RR42_RS22220 0.44 +0.1
324,718 + RR42_RS22220 0.59 -0.6
324,718 + RR42_RS22220 0.59 -0.5
324,719 - RR42_RS22220 0.60 -0.4
324,719 - RR42_RS22220 0.60 +0.3
324,962 - +1.4
325,071 - RR42_RS22225 0.22 +0.3
325,087 - RR42_RS22225 0.26 -0.8
325,087 - RR42_RS22225 0.26 +0.2
325,225 + RR42_RS22225 0.60 +0.4
325,225 + RR42_RS22225 0.60 +0.9
325,225 + RR42_RS22225 0.60 -2.0
325,226 - RR42_RS22225 0.60 -0.5
325,228 - RR42_RS22225 0.61 +0.2
325,228 - RR42_RS22225 0.61 -0.9
325,228 - RR42_RS22225 0.61 -0.8
325,239 - RR42_RS22225 0.63 +0.2
325,976 + RR42_RS22230 0.69 -1.6
326,082 - RR42_RS22230 0.82 -0.3
326,133 - RR42_RS22230 0.87 -1.8
326,173 + +1.0
326,371 + RR42_RS22235 0.18 +0.9
326,372 - RR42_RS22235 0.18 +0.3
326,659 + RR42_RS22235 0.64 +0.5
326,659 + RR42_RS22235 0.64 -0.7
326,659 + RR42_RS22235 0.64 -0.1
326,659 + RR42_RS22235 0.64 -0.8
326,660 - RR42_RS22235 0.64 +1.4
326,660 - RR42_RS22235 0.64 -0.8
326,827 + -0.0
326,828 - -1.0
326,828 - +0.6
327,005 - +0.3

Or see this region's nucleotide sequence