Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21760 and RR42_RS21765 are separated by 139 nucleotides RR42_RS21765 and RR42_RS21770 are separated by 14 nucleotides RR42_RS21770 and RR42_RS21775 are separated by 10 nucleotides
RR42_RS21760: RR42_RS21760 - succinate-semialdehyde dehydrogenase, at 210,422 to 211,870
_RS21760
RR42_RS21765: RR42_RS21765 - 3-oxoacyl-ACP reductase, at 212,010 to 212,750
_RS21765
RR42_RS21770: RR42_RS21770 - dihydrolipoamide dehydrogenase, at 212,765 to 214,165
_RS21770
RR42_RS21775: RR42_RS21775 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 214,176 to 215,408
_RS21775
Position (kb) 212
213
214
215 Strain fitness (log2 ratio) -1
0
1
2
3 at 211.793 kb on - strand at 211.825 kb on + strand at 211.827 kb on + strand at 211.890 kb on - strand at 211.934 kb on - strand at 212.024 kb on - strand at 212.024 kb on - strand at 212.212 kb on - strand, within RR42_RS21765 at 212.306 kb on - strand, within RR42_RS21765 at 212.392 kb on + strand, within RR42_RS21765 at 212.471 kb on - strand, within RR42_RS21765 at 212.746 kb on + strand at 212.747 kb on - strand at 212.747 kb on - strand at 212.770 kb on + strand at 212.771 kb on - strand at 212.771 kb on - strand at 212.893 kb on - strand at 212.930 kb on - strand, within RR42_RS21770 at 213.111 kb on + strand, within RR42_RS21770 at 213.112 kb on - strand, within RR42_RS21770 at 213.112 kb on - strand, within RR42_RS21770 at 213.243 kb on + strand, within RR42_RS21770 at 213.243 kb on + strand, within RR42_RS21770 at 213.244 kb on - strand, within RR42_RS21770 at 213.286 kb on + strand, within RR42_RS21770 at 213.287 kb on - strand, within RR42_RS21770 at 213.797 kb on + strand, within RR42_RS21770 at 213.797 kb on + strand, within RR42_RS21770 at 213.797 kb on + strand, within RR42_RS21770 at 213.798 kb on - strand, within RR42_RS21770 at 213.798 kb on - strand, within RR42_RS21770 at 214.086 kb on - strand at 214.177 kb on + strand at 214.177 kb on + strand at 214.177 kb on + strand at 214.178 kb on - strand at 214.826 kb on + strand, within RR42_RS21775 at 214.826 kb on + strand, within RR42_RS21775 at 214.827 kb on - strand, within RR42_RS21775 at 214.829 kb on + strand, within RR42_RS21775 at 214.829 kb on + strand, within RR42_RS21775 at 214.830 kb on - strand, within RR42_RS21775 at 214.830 kb on - strand, within RR42_RS21775 at 214.830 kb on - strand, within RR42_RS21775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 211,793 - -0.5 211,825 + +3.6 211,827 + +0.7 211,890 - +1.6 211,934 - -0.4 212,024 - -0.4 212,024 - -1.5 212,212 - RR42_RS21765 0.27 +1.0 212,306 - RR42_RS21765 0.40 +1.2 212,392 + RR42_RS21765 0.52 -0.7 212,471 - RR42_RS21765 0.62 +0.1 212,746 + +0.2 212,747 - -1.0 212,747 - -0.4 212,770 + +0.4 212,771 - -0.1 212,771 - -0.4 212,893 - +0.1 212,930 - RR42_RS21770 0.12 +0.3 213,111 + RR42_RS21770 0.25 +0.5 213,112 - RR42_RS21770 0.25 +1.2 213,112 - RR42_RS21770 0.25 -1.3 213,243 + RR42_RS21770 0.34 -0.2 213,243 + RR42_RS21770 0.34 +0.0 213,244 - RR42_RS21770 0.34 -0.5 213,286 + RR42_RS21770 0.37 +0.1 213,287 - RR42_RS21770 0.37 -0.5 213,797 + RR42_RS21770 0.74 +0.3 213,797 + RR42_RS21770 0.74 -0.1 213,797 + RR42_RS21770 0.74 +1.0 213,798 - RR42_RS21770 0.74 -0.1 213,798 - RR42_RS21770 0.74 -0.6 214,086 - +0.6 214,177 + +0.5 214,177 + +0.6 214,177 + +1.0 214,178 - -0.2 214,826 + RR42_RS21775 0.53 -0.1 214,826 + RR42_RS21775 0.53 -0.4 214,827 - RR42_RS21775 0.53 -0.2 214,829 + RR42_RS21775 0.53 +0.3 214,829 + RR42_RS21775 0.53 -0.2 214,830 - RR42_RS21775 0.53 -0.6 214,830 - RR42_RS21775 0.53 -0.2 214,830 - RR42_RS21775 0.53 +0.2
Or see this region's nucleotide sequence