Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21715 and RR42_RS21720 are separated by 260 nucleotides RR42_RS21720 and RR42_RS21725 are separated by 11 nucleotides
RR42_RS21715: RR42_RS21715 - ATPase AAA, at 199,448 to 201,484
_RS21715
RR42_RS21720: RR42_RS21720 - acetoin catabolism protein X, at 201,745 to 202,869
_RS21720
RR42_RS21725: RR42_RS21725 - ABC transporter substrate-binding protein, at 202,881 to 203,885
_RS21725
Position (kb) 201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 200.942 kb on + strand, within RR42_RS21715 at 200.942 kb on + strand, within RR42_RS21715 at 200.943 kb on - strand, within RR42_RS21715 at 200.943 kb on - strand, within RR42_RS21715 at 201.164 kb on - strand, within RR42_RS21715 at 201.357 kb on - strand at 201.357 kb on - strand at 201.357 kb on - strand at 201.357 kb on - strand at 201.357 kb on - strand at 201.571 kb on - strand at 201.571 kb on - strand at 201.644 kb on - strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.711 kb on - strand at 201.867 kb on + strand, within RR42_RS21720 at 202.414 kb on + strand, within RR42_RS21720 at 202.414 kb on + strand, within RR42_RS21720 at 202.415 kb on - strand, within RR42_RS21720 at 203.037 kb on + strand, within RR42_RS21725 at 203.037 kb on + strand, within RR42_RS21725 at 203.173 kb on - strand, within RR42_RS21725 at 203.173 kb on - strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.488 kb on - strand, within RR42_RS21725 at 203.637 kb on + strand, within RR42_RS21725
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 200,942 + RR42_RS21715 0.73 -0.0 200,942 + RR42_RS21715 0.73 +1.2 200,943 - RR42_RS21715 0.73 -0.3 200,943 - RR42_RS21715 0.73 -1.4 201,164 - RR42_RS21715 0.84 +2.7 201,357 - -0.5 201,357 - +0.3 201,357 - +1.5 201,357 - +0.1 201,357 - -0.3 201,571 - -0.9 201,571 - +0.2 201,644 - +0.2 201,710 + -0.1 201,710 + +0.1 201,711 - -0.1 201,867 + RR42_RS21720 0.11 -0.1 202,414 + RR42_RS21720 0.59 +1.0 202,414 + RR42_RS21720 0.59 -3.2 202,415 - RR42_RS21720 0.60 -2.5 203,037 + RR42_RS21725 0.16 +0.4 203,037 + RR42_RS21725 0.16 +0.5 203,173 - RR42_RS21725 0.29 -0.6 203,173 - RR42_RS21725 0.29 +1.3 203,219 + RR42_RS21725 0.34 -1.5 203,219 + RR42_RS21725 0.34 -1.1 203,219 + RR42_RS21725 0.34 -0.5 203,487 + RR42_RS21725 0.60 -0.5 203,487 + RR42_RS21725 0.60 -0.1 203,487 + RR42_RS21725 0.60 +0.0 203,488 - RR42_RS21725 0.60 -0.4 203,637 + RR42_RS21725 0.75 -1.0
Or see this region's nucleotide sequence