Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21450

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21445 and RR42_RS21450 are separated by 679 nucleotidesRR42_RS21450 and RR42_RS21455 are separated by 12 nucleotides RR42_RS21445: RR42_RS21445 - hypothetical protein, at 142,257 to 142,553 _RS21445 RR42_RS21450: RR42_RS21450 - hypothetical protein, at 143,233 to 143,598 _RS21450 RR42_RS21455: RR42_RS21455 - transposase, at 143,611 to 144,705 _RS21455 Position (kb) 143 144Strain fitness (log2 ratio) -2 -1 0 1at 142.235 kb on + strandat 142.236 kb on - strandat 142.239 kb on + strandat 142.240 kb on - strandat 142.240 kb on - strandat 142.465 kb on - strand, within RR42_RS21445at 142.667 kb on + strandat 142.668 kb on - strandat 142.668 kb on - strandat 142.696 kb on + strandat 142.697 kb on - strandat 142.844 kb on - strandat 142.844 kb on - strandat 142.855 kb on + strandat 142.891 kb on + strandat 142.891 kb on + strandat 142.891 kb on + strandat 142.892 kb on - strandat 142.894 kb on - strandat 142.894 kb on - strandat 142.960 kb on + strandat 143.016 kb on + strandat 143.060 kb on + strandat 143.060 kb on + strandat 143.061 kb on - strandat 143.156 kb on + strandat 143.261 kb on + strandat 143.261 kb on + strandat 143.275 kb on - strand, within RR42_RS21450at 143.309 kb on + strand, within RR42_RS21450at 143.570 kb on + strandat 143.571 kb on - strandat 143.722 kb on + strand, within RR42_RS21455at 143.741 kb on - strand, within RR42_RS21455at 143.975 kb on - strand, within RR42_RS21455at 144.191 kb on - strand, within RR42_RS21455

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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142,235 + -0.5
142,236 - +0.3
142,239 + +0.4
142,240 - -0.4
142,240 - -0.4
142,465 - RR42_RS21445 0.70 +0.2
142,667 + +0.6
142,668 - -2.2
142,668 - -0.7
142,696 + +0.2
142,697 - -0.4
142,844 - +0.9
142,844 - -0.4
142,855 + -0.1
142,891 + -0.0
142,891 + +0.3
142,891 + +1.3
142,892 - -0.2
142,894 - +0.6
142,894 - +0.4
142,960 + -0.6
143,016 + +0.4
143,060 + +0.5
143,060 + -0.1
143,061 - -1.2
143,156 + -0.3
143,261 + +1.7
143,261 + -0.6
143,275 - RR42_RS21450 0.11 -0.8
143,309 + RR42_RS21450 0.21 -1.3
143,570 + +0.1
143,571 - +0.2
143,722 + RR42_RS21455 0.10 +1.3
143,741 - RR42_RS21455 0.12 -0.5
143,975 - RR42_RS21455 0.33 -1.6
144,191 - RR42_RS21455 0.53 -0.3

Or see this region's nucleotide sequence