Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21445 and RR42_RS21450 are separated by 679 nucleotides RR42_RS21450 and RR42_RS21455 are separated by 12 nucleotides
RR42_RS21445: RR42_RS21445 - hypothetical protein, at 142,257 to 142,553
_RS21445
RR42_RS21450: RR42_RS21450 - hypothetical protein, at 143,233 to 143,598
_RS21450
RR42_RS21455: RR42_RS21455 - transposase, at 143,611 to 144,705
_RS21455
Position (kb)
143
144 Strain fitness (log2 ratio)
-2
-1
0
1 at 142.235 kb on + strand at 142.236 kb on - strand at 142.239 kb on + strand at 142.240 kb on - strand at 142.240 kb on - strand at 142.465 kb on - strand, within RR42_RS21445 at 142.667 kb on + strand at 142.668 kb on - strand at 142.668 kb on - strand at 142.696 kb on + strand at 142.697 kb on - strand at 142.844 kb on - strand at 142.844 kb on - strand at 142.855 kb on + strand at 142.891 kb on + strand at 142.891 kb on + strand at 142.891 kb on + strand at 142.892 kb on - strand at 142.894 kb on - strand at 142.894 kb on - strand at 142.960 kb on + strand at 143.016 kb on + strand at 143.060 kb on + strand at 143.060 kb on + strand at 143.061 kb on - strand at 143.156 kb on + strand at 143.261 kb on + strand at 143.261 kb on + strand at 143.275 kb on - strand, within RR42_RS21450 at 143.309 kb on + strand, within RR42_RS21450 at 143.570 kb on + strand at 143.571 kb on - strand at 143.722 kb on + strand, within RR42_RS21455 at 143.741 kb on - strand, within RR42_RS21455 at 143.975 kb on - strand, within RR42_RS21455 at 144.191 kb on - strand, within RR42_RS21455
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 142,235 + -0.5 142,236 - +0.3 142,239 + +0.4 142,240 - -0.4 142,240 - -0.4 142,465 - RR42_RS21445 0.70 +0.2 142,667 + +0.6 142,668 - -2.2 142,668 - -0.7 142,696 + +0.2 142,697 - -0.4 142,844 - +0.9 142,844 - -0.4 142,855 + -0.1 142,891 + -0.0 142,891 + +0.3 142,891 + +1.3 142,892 - -0.2 142,894 - +0.6 142,894 - +0.4 142,960 + -0.6 143,016 + +0.4 143,060 + +0.5 143,060 + -0.1 143,061 - -1.2 143,156 + -0.3 143,261 + +1.7 143,261 + -0.6 143,275 - RR42_RS21450 0.11 -0.8 143,309 + RR42_RS21450 0.21 -1.3 143,570 + +0.1 143,571 - +0.2 143,722 + RR42_RS21455 0.10 +1.3 143,741 - RR42_RS21455 0.12 -0.5 143,975 - RR42_RS21455 0.33 -1.6 144,191 - RR42_RS21455 0.53 -0.3
Or see this region's nucleotide sequence