Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20300

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20295 and RR42_RS20300 are separated by 50 nucleotidesRR42_RS20300 and RR42_RS20305 overlap by 4 nucleotides RR42_RS20295: RR42_RS20295 - alpha/beta hydrolase, at 4,390,956 to 4,391,891 _RS20295 RR42_RS20300: RR42_RS20300 - MerR family transcriptional regulator, at 4,391,942 to 4,392,442 _RS20300 RR42_RS20305: RR42_RS20305 - metal ABC transporter ATPase, at 4,392,439 to 4,394,910 _RS20305 Position (kb) 4391 4392 4393Strain fitness (log2 ratio) -3 -2 -1 0 1at 4391.010 kb on + strandat 4391.010 kb on + strandat 4391.305 kb on + strand, within RR42_RS20295at 4391.672 kb on - strand, within RR42_RS20295at 4391.672 kb on - strand, within RR42_RS20295at 4391.944 kb on - strandat 4392.056 kb on - strand, within RR42_RS20300at 4392.242 kb on + strand, within RR42_RS20300at 4392.242 kb on + strand, within RR42_RS20300at 4392.372 kb on + strand, within RR42_RS20300at 4392.372 kb on + strand, within RR42_RS20300at 4392.373 kb on - strand, within RR42_RS20300at 4392.436 kb on + strandat 4392.436 kb on + strandat 4392.581 kb on + strandat 4392.581 kb on + strandat 4392.581 kb on + strandat 4392.582 kb on - strandat 4392.845 kb on - strand, within RR42_RS20305at 4392.845 kb on - strand, within RR42_RS20305at 4393.380 kb on + strand, within RR42_RS20305

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,391,010 + +0.6
4,391,010 + +0.4
4,391,305 + RR42_RS20295 0.37 +0.2
4,391,672 - RR42_RS20295 0.76 +0.5
4,391,672 - RR42_RS20295 0.76 -0.2
4,391,944 - +0.7
4,392,056 - RR42_RS20300 0.23 -1.8
4,392,242 + RR42_RS20300 0.60 -0.8
4,392,242 + RR42_RS20300 0.60 -2.1
4,392,372 + RR42_RS20300 0.86 +0.5
4,392,372 + RR42_RS20300 0.86 -1.4
4,392,373 - RR42_RS20300 0.86 -0.5
4,392,436 + +0.0
4,392,436 + -0.5
4,392,581 + +0.5
4,392,581 + -0.6
4,392,581 + -1.9
4,392,582 - -0.2
4,392,845 - RR42_RS20305 0.16 -0.7
4,392,845 - RR42_RS20305 0.16 -1.8
4,393,380 + RR42_RS20305 0.38 -2.8

Or see this region's nucleotide sequence