Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19090

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19085 and RR42_RS19090 are separated by 158 nucleotidesRR42_RS19090 and RR42_RS19095 are separated by 570 nucleotides RR42_RS19085: RR42_RS19085 - cytochrome C biogenesis protein ResB, at 4,134,242 to 4,136,428 _RS19085 RR42_RS19090: RR42_RS19090 - cytochrome C, at 4,136,587 to 4,137,246 _RS19090 RR42_RS19095: RR42_RS19095 - GTP-binding protein, at 4,137,817 to 4,138,563 _RS19095 Position (kb) 4136 4137 4138Strain fitness (log2 ratio) -1 0 1 2 3at 4135.899 kb on + strand, within RR42_RS19085at 4135.905 kb on - strand, within RR42_RS19085at 4136.588 kb on + strandat 4136.589 kb on - strandat 4136.607 kb on - strandat 4136.607 kb on - strandat 4137.009 kb on - strand, within RR42_RS19090at 4137.058 kb on - strand, within RR42_RS19090at 4137.457 kb on - strandat 4137.523 kb on - strandat 4137.523 kb on - strandat 4137.523 kb on - strandat 4137.523 kb on - strandat 4137.540 kb on - strandat 4137.579 kb on - strandat 4137.579 kb on - strandat 4137.579 kb on - strandat 4137.640 kb on - strandat 4137.640 kb on - strandat 4137.640 kb on - strandat 4137.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,135,899 + RR42_RS19085 0.76 +0.1
4,135,905 - RR42_RS19085 0.76 -0.4
4,136,588 + -0.4
4,136,589 - +3.0
4,136,607 - -0.7
4,136,607 - +0.2
4,137,009 - RR42_RS19090 0.64 -0.8
4,137,058 - RR42_RS19090 0.71 -1.0
4,137,457 - -1.1
4,137,523 - +0.0
4,137,523 - +0.2
4,137,523 - -0.7
4,137,523 - +0.2
4,137,540 - +0.1
4,137,579 - +0.3
4,137,579 - -0.4
4,137,579 - -0.2
4,137,640 - +0.4
4,137,640 - +0.6
4,137,640 - +1.1
4,137,640 - +1.4

Or see this region's nucleotide sequence