Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19065

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19060 and RR42_RS19065 are separated by 221 nucleotidesRR42_RS19065 and RR42_RS19070 overlap by 4 nucleotidesRR42_RS19070 and RR42_RS19075 are separated by 24 nucleotides RR42_RS19060: RR42_RS19060 - sulfoxide reductase catalytic subunit YedY, at 4,129,796 to 4,130,797 _RS19060 RR42_RS19065: RR42_RS19065 - transcriptional regulator, at 4,131,019 to 4,131,855 _RS19065 RR42_RS19070: RR42_RS19070 - DNA-directed RNA polymerase sigma-70 factor, at 4,131,852 to 4,132,409 _RS19070 RR42_RS19075: RR42_RS19075 - lipoprotein, at 4,132,434 to 4,132,874 _RS19075 Position (kb) 4131 4132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4130.059 kb on + strand, within RR42_RS19060at 4130.059 kb on + strand, within RR42_RS19060at 4130.059 kb on + strand, within RR42_RS19060at 4130.083 kb on - strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.142 kb on + strand, within RR42_RS19060at 4130.143 kb on - strand, within RR42_RS19060at 4130.205 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.277 kb on + strand, within RR42_RS19060at 4130.278 kb on - strand, within RR42_RS19060at 4130.278 kb on - strand, within RR42_RS19060at 4130.278 kb on - strand, within RR42_RS19060at 4130.380 kb on - strand, within RR42_RS19060at 4130.427 kb on + strand, within RR42_RS19060at 4130.427 kb on + strand, within RR42_RS19060at 4130.427 kb on + strand, within RR42_RS19060at 4130.428 kb on - strand, within RR42_RS19060at 4130.428 kb on - strand, within RR42_RS19060at 4130.533 kb on - strand, within RR42_RS19060at 4130.533 kb on - strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.535 kb on + strand, within RR42_RS19060at 4130.536 kb on - strand, within RR42_RS19060at 4130.536 kb on - strand, within RR42_RS19060at 4130.536 kb on - strand, within RR42_RS19060at 4130.536 kb on - strand, within RR42_RS19060at 4130.545 kb on - strand, within RR42_RS19060at 4130.545 kb on - strand, within RR42_RS19060at 4130.562 kb on + strand, within RR42_RS19060at 4130.563 kb on - strand, within RR42_RS19060at 4130.563 kb on - strand, within RR42_RS19060at 4130.589 kb on + strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.590 kb on - strand, within RR42_RS19060at 4130.821 kb on - strandat 4130.958 kb on + strandat 4130.958 kb on + strandat 4130.958 kb on + strandat 4130.959 kb on - strandat 4130.959 kb on - strandat 4130.959 kb on - strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.962 kb on + strandat 4130.963 kb on - strandat 4130.963 kb on - strandat 4131.032 kb on + strandat 4131.033 kb on - strandat 4131.033 kb on - strandat 4131.041 kb on + strandat 4131.116 kb on - strand, within RR42_RS19065at 4131.116 kb on - strand, within RR42_RS19065at 4131.122 kb on + strand, within RR42_RS19065at 4131.123 kb on - strand, within RR42_RS19065at 4131.123 kb on - strand, within RR42_RS19065at 4131.135 kb on + strand, within RR42_RS19065at 4131.136 kb on - strand, within RR42_RS19065at 4131.136 kb on - strand, within RR42_RS19065at 4131.136 kb on - strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.263 kb on + strand, within RR42_RS19065at 4131.264 kb on - strand, within RR42_RS19065at 4131.264 kb on - strand, within RR42_RS19065at 4131.376 kb on + strand, within RR42_RS19065at 4131.443 kb on + strand, within RR42_RS19065at 4131.443 kb on + strand, within RR42_RS19065at 4131.443 kb on + strand, within RR42_RS19065at 4131.444 kb on - strand, within RR42_RS19065at 4131.633 kb on + strand, within RR42_RS19065at 4131.633 kb on + strand, within RR42_RS19065at 4131.633 kb on + strand, within RR42_RS19065at 4131.634 kb on - strand, within RR42_RS19065at 4131.770 kb on + strand, within RR42_RS19065at 4131.770 kb on + strand, within RR42_RS19065at 4131.770 kb on + strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.771 kb on - strand, within RR42_RS19065at 4131.818 kb on + strandat 4132.018 kb on + strand, within RR42_RS19070at 4132.018 kb on + strand, within RR42_RS19070at 4132.019 kb on - strand, within RR42_RS19070at 4132.019 kb on - strand, within RR42_RS19070at 4132.153 kb on + strand, within RR42_RS19070at 4132.153 kb on + strand, within RR42_RS19070at 4132.153 kb on + strand, within RR42_RS19070at 4132.154 kb on - strand, within RR42_RS19070at 4132.154 kb on - strand, within RR42_RS19070at 4132.432 kb on + strandat 4132.531 kb on + strand, within RR42_RS19075at 4132.573 kb on + strand, within RR42_RS19075at 4132.573 kb on + strand, within RR42_RS19075at 4132.573 kb on + strand, within RR42_RS19075at 4132.574 kb on - strand, within RR42_RS19075at 4132.574 kb on - strand, within RR42_RS19075at 4132.678 kb on + strand, within RR42_RS19075at 4132.678 kb on + strand, within RR42_RS19075at 4132.679 kb on - strand, within RR42_RS19075at 4132.679 kb on - strand, within RR42_RS19075at 4132.679 kb on - strand, within RR42_RS19075at 4132.739 kb on + strand, within RR42_RS19075at 4132.740 kb on - strand, within RR42_RS19075

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,130,059 + RR42_RS19060 0.26 -0.7
4,130,059 + RR42_RS19060 0.26 +0.4
4,130,059 + RR42_RS19060 0.26 -0.6
4,130,083 - RR42_RS19060 0.29 +0.4
4,130,142 + RR42_RS19060 0.35 +1.0
4,130,142 + RR42_RS19060 0.35 -0.6
4,130,142 + RR42_RS19060 0.35 +0.6
4,130,142 + RR42_RS19060 0.35 -0.1
4,130,142 + RR42_RS19060 0.35 +0.2
4,130,142 + RR42_RS19060 0.35 -0.6
4,130,142 + RR42_RS19060 0.35 -0.4
4,130,143 - RR42_RS19060 0.35 -0.7
4,130,205 + RR42_RS19060 0.41 -0.1
4,130,277 + RR42_RS19060 0.48 -0.4
4,130,277 + RR42_RS19060 0.48 -0.0
4,130,277 + RR42_RS19060 0.48 +0.6
4,130,277 + RR42_RS19060 0.48 +0.7
4,130,277 + RR42_RS19060 0.48 +0.7
4,130,277 + RR42_RS19060 0.48 -1.1
4,130,277 + RR42_RS19060 0.48 +0.3
4,130,277 + RR42_RS19060 0.48 +0.2
4,130,278 - RR42_RS19060 0.48 +0.4
4,130,278 - RR42_RS19060 0.48 -0.3
4,130,278 - RR42_RS19060 0.48 +1.2
4,130,380 - RR42_RS19060 0.58 +0.0
4,130,427 + RR42_RS19060 0.63 -0.0
4,130,427 + RR42_RS19060 0.63 -0.1
4,130,427 + RR42_RS19060 0.63 +0.2
4,130,428 - RR42_RS19060 0.63 -0.6
4,130,428 - RR42_RS19060 0.63 +0.5
4,130,533 - RR42_RS19060 0.74 +0.8
4,130,533 - RR42_RS19060 0.74 +0.8
4,130,535 + RR42_RS19060 0.74 -0.0
4,130,535 + RR42_RS19060 0.74 -0.3
4,130,535 + RR42_RS19060 0.74 +0.6
4,130,535 + RR42_RS19060 0.74 -1.5
4,130,535 + RR42_RS19060 0.74 +0.0
4,130,535 + RR42_RS19060 0.74 +0.1
4,130,536 - RR42_RS19060 0.74 -0.6
4,130,536 - RR42_RS19060 0.74 +1.9
4,130,536 - RR42_RS19060 0.74 -0.4
4,130,536 - RR42_RS19060 0.74 -1.0
4,130,545 - RR42_RS19060 0.75 -0.5
4,130,545 - RR42_RS19060 0.75 +0.0
4,130,562 + RR42_RS19060 0.76 +0.9
4,130,563 - RR42_RS19060 0.77 +0.2
4,130,563 - RR42_RS19060 0.77 +0.4
4,130,589 + RR42_RS19060 0.79 +0.3
4,130,590 - RR42_RS19060 0.79 -0.2
4,130,590 - RR42_RS19060 0.79 +0.5
4,130,590 - RR42_RS19060 0.79 +2.8
4,130,590 - RR42_RS19060 0.79 +1.7
4,130,590 - RR42_RS19060 0.79 +0.8
4,130,590 - RR42_RS19060 0.79 +0.0
4,130,590 - RR42_RS19060 0.79 -1.1
4,130,590 - RR42_RS19060 0.79 -0.5
4,130,821 - +3.2
4,130,958 + -0.8
4,130,958 + -0.0
4,130,958 + -2.1
4,130,959 - -0.6
4,130,959 - +0.8
4,130,959 - +0.7
4,130,962 + +0.1
4,130,962 + +0.5
4,130,962 + -1.6
4,130,962 + -0.3
4,130,962 + +0.5
4,130,962 + -1.2
4,130,963 - -0.0
4,130,963 - +0.4
4,131,032 + -3.0
4,131,033 - +0.5
4,131,033 - +0.2
4,131,041 + -2.5
4,131,116 - RR42_RS19065 0.12 -2.2
4,131,116 - RR42_RS19065 0.12 -2.1
4,131,122 + RR42_RS19065 0.12 -3.1
4,131,123 - RR42_RS19065 0.12 -2.4
4,131,123 - RR42_RS19065 0.12 -3.8
4,131,135 + RR42_RS19065 0.14 -2.7
4,131,136 - RR42_RS19065 0.14 -4.2
4,131,136 - RR42_RS19065 0.14 -2.2
4,131,136 - RR42_RS19065 0.14 -2.8
4,131,263 + RR42_RS19065 0.29 -2.3
4,131,263 + RR42_RS19065 0.29 -3.3
4,131,263 + RR42_RS19065 0.29 -2.8
4,131,263 + RR42_RS19065 0.29 -2.5
4,131,263 + RR42_RS19065 0.29 -1.6
4,131,264 - RR42_RS19065 0.29 -1.4
4,131,264 - RR42_RS19065 0.29 -0.1
4,131,376 + RR42_RS19065 0.43 -1.4
4,131,443 + RR42_RS19065 0.51 -2.8
4,131,443 + RR42_RS19065 0.51 -2.9
4,131,443 + RR42_RS19065 0.51 -3.7
4,131,444 - RR42_RS19065 0.51 -3.5
4,131,633 + RR42_RS19065 0.73 -1.1
4,131,633 + RR42_RS19065 0.73 -2.2
4,131,633 + RR42_RS19065 0.73 -0.8
4,131,634 - RR42_RS19065 0.73 -1.0
4,131,770 + RR42_RS19065 0.90 +1.2
4,131,770 + RR42_RS19065 0.90 -3.4
4,131,770 + RR42_RS19065 0.90 -3.1
4,131,771 - RR42_RS19065 0.90 -2.9
4,131,771 - RR42_RS19065 0.90 -2.9
4,131,771 - RR42_RS19065 0.90 -2.9
4,131,771 - RR42_RS19065 0.90 -3.3
4,131,771 - RR42_RS19065 0.90 -1.4
4,131,771 - RR42_RS19065 0.90 -1.3
4,131,771 - RR42_RS19065 0.90 -4.0
4,131,771 - RR42_RS19065 0.90 -3.5
4,131,818 + -1.8
4,132,018 + RR42_RS19070 0.30 +0.1
4,132,018 + RR42_RS19070 0.30 +0.4
4,132,019 - RR42_RS19070 0.30 -2.9
4,132,019 - RR42_RS19070 0.30 +0.3
4,132,153 + RR42_RS19070 0.54 +0.3
4,132,153 + RR42_RS19070 0.54 -1.1
4,132,153 + RR42_RS19070 0.54 +0.6
4,132,154 - RR42_RS19070 0.54 +0.5
4,132,154 - RR42_RS19070 0.54 -0.1
4,132,432 + +0.2
4,132,531 + RR42_RS19075 0.22 +1.0
4,132,573 + RR42_RS19075 0.32 -0.1
4,132,573 + RR42_RS19075 0.32 -0.0
4,132,573 + RR42_RS19075 0.32 -0.1
4,132,574 - RR42_RS19075 0.32 +0.4
4,132,574 - RR42_RS19075 0.32 +0.1
4,132,678 + RR42_RS19075 0.55 +0.2
4,132,678 + RR42_RS19075 0.55 -1.0
4,132,679 - RR42_RS19075 0.56 +0.5
4,132,679 - RR42_RS19075 0.56 +0.1
4,132,679 - RR42_RS19075 0.56 +0.9
4,132,739 + RR42_RS19075 0.69 +0.9
4,132,740 - RR42_RS19075 0.69 -0.0

Or see this region's nucleotide sequence