Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18815

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18805 and RR42_RS18810 are separated by 63 nucleotidesRR42_RS18810 and RR42_RS18815 are separated by 258 nucleotidesRR42_RS18815 and RR42_RS18820 are separated by 37 nucleotides RR42_RS18805: RR42_RS18805 - peptidase, at 4,078,632 to 4,079,129 _RS18805 RR42_RS18810: RR42_RS18810 - stringent starvation protein A, at 4,079,193 to 4,079,804 _RS18810 RR42_RS18815: RR42_RS18815 - cytochrome C, at 4,080,063 to 4,080,806 _RS18815 RR42_RS18820: RR42_RS18820 - cytochrome B, at 4,080,844 to 4,082,247 _RS18820 Position (kb) 4080 4081Strain fitness (log2 ratio) -2 -1 0 1at 4079.086 kb on + strandat 4079.086 kb on + strandat 4079.087 kb on - strandat 4079.087 kb on - strandat 4079.104 kb on + strandat 4079.105 kb on - strandat 4079.865 kb on - strandat 4079.899 kb on + strandat 4079.919 kb on + strandat 4079.920 kb on - strandat 4079.943 kb on - strandat 4079.943 kb on - strandat 4080.065 kb on - strandat 4080.082 kb on + strandat 4080.223 kb on + strand, within RR42_RS18815at 4080.419 kb on + strand, within RR42_RS18815at 4080.419 kb on + strand, within RR42_RS18815at 4080.428 kb on - strand, within RR42_RS18815at 4080.616 kb on + strand, within RR42_RS18815at 4080.652 kb on + strand, within RR42_RS18815at 4080.833 kb on + strandat 4080.834 kb on - strandat 4080.933 kb on - strandat 4080.985 kb on + strand, within RR42_RS18820at 4081.314 kb on - strand, within RR42_RS18820at 4081.314 kb on - strand, within RR42_RS18820at 4081.484 kb on + strand, within RR42_RS18820at 4081.484 kb on + strand, within RR42_RS18820at 4081.487 kb on + strand, within RR42_RS18820at 4081.683 kb on - strand, within RR42_RS18820at 4081.794 kb on - strand, within RR42_RS18820

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,079,086 + +0.4
4,079,086 + +0.3
4,079,087 - +0.0
4,079,087 - +0.4
4,079,104 + +1.0
4,079,105 - +0.4
4,079,865 - -0.1
4,079,899 + -0.6
4,079,919 + +1.1
4,079,920 - -0.3
4,079,943 - -0.1
4,079,943 - +0.3
4,080,065 - -1.0
4,080,082 + +0.0
4,080,223 + RR42_RS18815 0.22 -0.9
4,080,419 + RR42_RS18815 0.48 +0.2
4,080,419 + RR42_RS18815 0.48 -1.0
4,080,428 - RR42_RS18815 0.49 -0.6
4,080,616 + RR42_RS18815 0.74 -1.1
4,080,652 + RR42_RS18815 0.79 -0.5
4,080,833 + +0.4
4,080,834 - -1.2
4,080,933 - +0.0
4,080,985 + RR42_RS18820 0.10 -0.1
4,081,314 - RR42_RS18820 0.33 -0.2
4,081,314 - RR42_RS18820 0.33 -1.2
4,081,484 + RR42_RS18820 0.46 -2.0
4,081,484 + RR42_RS18820 0.46 +0.0
4,081,487 + RR42_RS18820 0.46 +0.2
4,081,683 - RR42_RS18820 0.60 +0.2
4,081,794 - RR42_RS18820 0.68 +0.9

Or see this region's nucleotide sequence