Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17355 and RR42_RS17360 are separated by 55 nucleotides RR42_RS17360 and RR42_RS17365 are separated by 65 nucleotides RR42_RS17365 and RR42_RS17370 are separated by 92 nucleotides RR42_RS17370 and RR42_RS17375 are separated by 77 nucleotides RR42_RS17375 and RR42_RS17380 are separated by 77 nucleotides
RR42_RS17355: RR42_RS17355 - hypothetical protein, at 3,756,274 to 3,757,002
_RS17355
RR42_RS17360: RR42_RS17360 - pyrroline-5-carboxylate reductase, at 3,757,058 to 3,757,882
_RS17360
RR42_RS17365: RR42_RS17365 - 4-hydroxybenzoate polyprenyltransferase, at 3,757,948 to 3,758,841
_RS17365
RR42_RS17370: RR42_RS17370 - ferritin, at 3,758,934 to 3,759,419
_RS17370
RR42_RS17375: RR42_RS17375 - hypothetical protein, at 3,759,497 to 3,759,691
_RS17375
RR42_RS17380: RR42_RS17380 - catalase, at 3,759,769 to 3,761,214
_RS17380
Position (kb)
3757
3758
3759 Strain fitness (log2 ratio)
-1
0
1 at 3757.961 kb on + strand at 3757.961 kb on + strand at 3757.961 kb on + strand at 3757.961 kb on + strand at 3757.962 kb on - strand at 3759.422 kb on + strand at 3759.563 kb on + strand, within RR42_RS17375 at 3759.770 kb on + strand at 3759.771 kb on - strand at 3759.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,757,961 + -0.0 3,757,961 + +0.6 3,757,961 + +0.6 3,757,961 + +0.9 3,757,962 - +1.2 3,759,422 + -1.2 3,759,563 + RR42_RS17375 0.34 -0.1 3,759,770 + -1.3 3,759,771 - +0.3 3,759,771 - +0.9
Or see this region's nucleotide sequence