Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14845 and RR42_RS14850 are separated by 411 nucleotides RR42_RS14850 and RR42_RS14855 are separated by 107 nucleotides
RR42_RS14845: RR42_RS14845 - MarR family transcriptional regulator, at 3,199,707 to 3,200,159
_RS14845
RR42_RS14850: RR42_RS14850 - 4-hydroxyphenylacetate permease, at 3,200,571 to 3,201,854
_RS14850
RR42_RS14855: RR42_RS14855 - monooxygenase, at 3,201,962 to 3,203,653
_RS14855
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-2
-1
0
1 at 3199.631 kb on - strand at 3199.899 kb on + strand, within RR42_RS14845 at 3199.900 kb on - strand, within RR42_RS14845 at 3199.902 kb on + strand, within RR42_RS14845 at 3200.162 kb on - strand at 3200.315 kb on + strand at 3200.315 kb on + strand at 3200.319 kb on + strand at 3200.364 kb on - strand at 3200.400 kb on + strand at 3200.400 kb on + strand at 3200.401 kb on - strand at 3200.448 kb on - strand at 3200.448 kb on - strand at 3200.688 kb on - strand at 3200.725 kb on - strand, within RR42_RS14850 at 3200.725 kb on - strand, within RR42_RS14850 at 3200.725 kb on - strand, within RR42_RS14850 at 3200.733 kb on + strand, within RR42_RS14850 at 3200.733 kb on + strand, within RR42_RS14850 at 3200.750 kb on - strand, within RR42_RS14850 at 3200.926 kb on - strand, within RR42_RS14850 at 3200.926 kb on - strand, within RR42_RS14850 at 3201.052 kb on - strand, within RR42_RS14850 at 3201.306 kb on + strand, within RR42_RS14850 at 3201.389 kb on + strand, within RR42_RS14850 at 3201.424 kb on + strand, within RR42_RS14850 at 3201.424 kb on + strand, within RR42_RS14850 at 3201.424 kb on + strand, within RR42_RS14850 at 3201.425 kb on - strand, within RR42_RS14850 at 3201.425 kb on - strand, within RR42_RS14850 at 3201.425 kb on - strand, within RR42_RS14850 at 3201.541 kb on - strand, within RR42_RS14850 at 3201.597 kb on + strand, within RR42_RS14850 at 3201.597 kb on + strand, within RR42_RS14850 at 3201.597 kb on + strand, within RR42_RS14850 at 3201.756 kb on - strand at 3201.769 kb on - strand at 3201.998 kb on + strand at 3202.001 kb on + strand at 3202.008 kb on - strand at 3202.364 kb on + strand, within RR42_RS14855 at 3202.365 kb on - strand, within RR42_RS14855 at 3202.496 kb on + strand, within RR42_RS14855 at 3202.587 kb on - strand, within RR42_RS14855 at 3202.804 kb on - strand, within RR42_RS14855 at 3202.804 kb on - strand, within RR42_RS14855
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,199,631 - +0.5 3,199,899 + RR42_RS14845 0.42 -1.9 3,199,900 - RR42_RS14845 0.43 -0.8 3,199,902 + RR42_RS14845 0.43 -1.1 3,200,162 - +0.4 3,200,315 + -0.3 3,200,315 + +0.3 3,200,319 + +0.1 3,200,364 - +0.8 3,200,400 + +0.4 3,200,400 + -1.7 3,200,401 - +0.5 3,200,448 - -1.0 3,200,448 - +0.7 3,200,688 - +0.4 3,200,725 - RR42_RS14850 0.12 -0.7 3,200,725 - RR42_RS14850 0.12 -0.3 3,200,725 - RR42_RS14850 0.12 +0.2 3,200,733 + RR42_RS14850 0.13 +1.4 3,200,733 + RR42_RS14850 0.13 +0.7 3,200,750 - RR42_RS14850 0.14 +0.5 3,200,926 - RR42_RS14850 0.28 -0.3 3,200,926 - RR42_RS14850 0.28 +0.2 3,201,052 - RR42_RS14850 0.37 +1.6 3,201,306 + RR42_RS14850 0.57 +0.2 3,201,389 + RR42_RS14850 0.64 +0.4 3,201,424 + RR42_RS14850 0.66 +0.1 3,201,424 + RR42_RS14850 0.66 -1.4 3,201,424 + RR42_RS14850 0.66 +0.4 3,201,425 - RR42_RS14850 0.67 +0.3 3,201,425 - RR42_RS14850 0.67 +0.4 3,201,425 - RR42_RS14850 0.67 +0.1 3,201,541 - RR42_RS14850 0.76 -0.0 3,201,597 + RR42_RS14850 0.80 +0.4 3,201,597 + RR42_RS14850 0.80 -0.1 3,201,597 + RR42_RS14850 0.80 +0.5 3,201,756 - +0.5 3,201,769 - +1.2 3,201,998 + -0.1 3,202,001 + -0.1 3,202,008 - -0.4 3,202,364 + RR42_RS14855 0.24 +0.2 3,202,365 - RR42_RS14855 0.24 +0.8 3,202,496 + RR42_RS14855 0.32 +0.6 3,202,587 - RR42_RS14855 0.37 -0.4 3,202,804 - RR42_RS14855 0.50 -0.4 3,202,804 - RR42_RS14855 0.50 +0.9
Or see this region's nucleotide sequence