Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06700

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06695 and RR42_RS06700 are separated by 2 nucleotides RR42_RS06695: RR42_RS06695 - hypothetical protein, at 1,455,621 to 1,456,721 _RS06695 RR42_RS06700: RR42_RS06700 - hypothetical protein, at 1,456,724 to 1,457,485 _RS06700 Position (kb) 1456 1457 1458Strain fitness (log2 ratio) -2 -1 0 1at 1455.938 kb on - strand, within RR42_RS06695at 1455.938 kb on - strand, within RR42_RS06695at 1455.939 kb on + strand, within RR42_RS06695at 1455.939 kb on + strand, within RR42_RS06695at 1455.940 kb on - strand, within RR42_RS06695at 1456.010 kb on - strand, within RR42_RS06695at 1456.148 kb on - strand, within RR42_RS06695at 1456.165 kb on + strand, within RR42_RS06695at 1456.165 kb on + strand, within RR42_RS06695at 1456.166 kb on - strand, within RR42_RS06695at 1456.264 kb on + strand, within RR42_RS06695at 1456.312 kb on + strand, within RR42_RS06695at 1456.313 kb on - strand, within RR42_RS06695at 1456.342 kb on + strand, within RR42_RS06695at 1456.432 kb on - strand, within RR42_RS06695at 1456.452 kb on - strand, within RR42_RS06695at 1456.619 kb on - strandat 1456.837 kb on + strand, within RR42_RS06700at 1456.905 kb on - strand, within RR42_RS06700at 1457.350 kb on + strand, within RR42_RS06700at 1457.351 kb on - strand, within RR42_RS06700at 1457.464 kb on - strandat 1457.517 kb on + strandat 1457.517 kb on + strandat 1457.518 kb on - strandat 1457.605 kb on + strandat 1457.705 kb on + strandat 1457.828 kb on + strandat 1457.828 kb on + strandat 1457.924 kb on - strandat 1458.078 kb on + strandat 1458.079 kb on - strandat 1458.110 kb on - strandat 1458.481 kb on + strandat 1458.481 kb on + strandat 1458.482 kb on - strandat 1458.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,455,938 - RR42_RS06695 0.29 -0.5
1,455,938 - RR42_RS06695 0.29 +0.7
1,455,939 + RR42_RS06695 0.29 +0.2
1,455,939 + RR42_RS06695 0.29 -0.3
1,455,940 - RR42_RS06695 0.29 -0.7
1,456,010 - RR42_RS06695 0.35 -0.8
1,456,148 - RR42_RS06695 0.48 +0.2
1,456,165 + RR42_RS06695 0.49 -1.2
1,456,165 + RR42_RS06695 0.49 -1.6
1,456,166 - RR42_RS06695 0.50 -0.3
1,456,264 + RR42_RS06695 0.58 +0.2
1,456,312 + RR42_RS06695 0.63 -1.1
1,456,313 - RR42_RS06695 0.63 +1.0
1,456,342 + RR42_RS06695 0.65 -0.3
1,456,432 - RR42_RS06695 0.74 +0.6
1,456,452 - RR42_RS06695 0.75 -0.1
1,456,619 - -2.0
1,456,837 + RR42_RS06700 0.15 -0.7
1,456,905 - RR42_RS06700 0.24 -1.5
1,457,350 + RR42_RS06700 0.82 -0.3
1,457,351 - RR42_RS06700 0.82 +1.3
1,457,464 - +0.8
1,457,517 + +0.5
1,457,517 + -0.8
1,457,518 - -0.2
1,457,605 + -0.1
1,457,705 + +0.2
1,457,828 + +1.1
1,457,828 + -0.7
1,457,924 - -0.1
1,458,078 + -0.1
1,458,079 - +0.3
1,458,110 - +0.6
1,458,481 + -0.0
1,458,481 + +0.3
1,458,482 - -0.3
1,458,482 - +1.0

Or see this region's nucleotide sequence