Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06315 and RR42_RS06320 are separated by 25 nucleotides RR42_RS06320 and RR42_RS06325 are separated by 278 nucleotides RR42_RS06325 and RR42_RS06330 are separated by 43 nucleotides RR42_RS06330 and RR42_RS06335 are separated by 83 nucleotides
RR42_RS06315: RR42_RS06315 - RNA methyltransferase, at 1,386,644 to 1,387,645
_RS06315
RR42_RS06320: RR42_RS06320 - 3-methylitaconate isomerase, at 1,387,671 to 1,388,177
_RS06320
RR42_RS06325: RR42_RS06325 - serine O-acetyltransferase, at 1,388,456 to 1,389,199
_RS06325
RR42_RS06330: RR42_RS06330 - UDP-2,3-diacylglucosamine hydrolase, at 1,389,243 to 1,390,031
_RS06330
RR42_RS06335: RR42_RS06335 - cyclophilin, at 1,390,115 to 1,390,615
_RS06335
Position (kb)
1388
1389
1390 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1387.564 kb on + strand at 1387.565 kb on - strand at 1387.666 kb on - strand at 1387.666 kb on - strand at 1387.668 kb on + strand at 1387.668 kb on + strand at 1387.668 kb on + strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1388.140 kb on - strand at 1388.140 kb on - strand at 1388.351 kb on + strand at 1388.352 kb on - strand at 1389.014 kb on + strand, within RR42_RS06325 at 1389.014 kb on + strand, within RR42_RS06325 at 1389.197 kb on + strand at 1389.197 kb on + strand at 1389.197 kb on + strand at 1389.197 kb on + strand at 1389.197 kb on + strand at 1389.198 kb on - strand at 1389.250 kb on - strand at 1390.117 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,387,564 + -2.2 1,387,565 - -0.3 1,387,666 - -0.1 1,387,666 - +1.5 1,387,668 + -0.1 1,387,668 + +0.0 1,387,668 + -1.0 1,387,669 - -0.6 1,387,669 - -0.4 1,387,669 - +0.1 1,387,669 - +1.2 1,387,669 - -1.7 1,387,669 - -0.2 1,387,669 - -0.8 1,388,140 - -0.2 1,388,140 - -0.1 1,388,351 + -0.7 1,388,352 - -0.4 1,389,014 + RR42_RS06325 0.75 -0.5 1,389,014 + RR42_RS06325 0.75 -4.0 1,389,197 + -1.0 1,389,197 + +0.0 1,389,197 + +0.0 1,389,197 + +0.0 1,389,197 + +1.2 1,389,198 - +0.3 1,389,250 - -2.2 1,390,117 - +0.3
Or see this region's nucleotide sequence