Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06325

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS06315 and RR42_RS06320 are separated by 25 nucleotidesRR42_RS06320 and RR42_RS06325 are separated by 278 nucleotidesRR42_RS06325 and RR42_RS06330 are separated by 43 nucleotidesRR42_RS06330 and RR42_RS06335 are separated by 83 nucleotides RR42_RS06315: RR42_RS06315 - RNA methyltransferase, at 1,386,644 to 1,387,645 _RS06315 RR42_RS06320: RR42_RS06320 - 3-methylitaconate isomerase, at 1,387,671 to 1,388,177 _RS06320 RR42_RS06325: RR42_RS06325 - serine O-acetyltransferase, at 1,388,456 to 1,389,199 _RS06325 RR42_RS06330: RR42_RS06330 - UDP-2,3-diacylglucosamine hydrolase, at 1,389,243 to 1,390,031 _RS06330 RR42_RS06335: RR42_RS06335 - cyclophilin, at 1,390,115 to 1,390,615 _RS06335 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1387.564 kb on + strandat 1387.565 kb on - strandat 1387.666 kb on - strandat 1387.666 kb on - strandat 1387.668 kb on + strandat 1387.668 kb on + strandat 1387.668 kb on + strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1388.140 kb on - strandat 1388.140 kb on - strandat 1388.351 kb on + strandat 1388.352 kb on - strandat 1389.014 kb on + strand, within RR42_RS06325at 1389.014 kb on + strand, within RR42_RS06325at 1389.197 kb on + strandat 1389.197 kb on + strandat 1389.197 kb on + strandat 1389.197 kb on + strandat 1389.197 kb on + strandat 1389.198 kb on - strandat 1389.250 kb on - strandat 1390.117 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,387,564 + -2.2
1,387,565 - -0.3
1,387,666 - -0.1
1,387,666 - +1.5
1,387,668 + -0.1
1,387,668 + +0.0
1,387,668 + -1.0
1,387,669 - -0.6
1,387,669 - -0.4
1,387,669 - +0.1
1,387,669 - +1.2
1,387,669 - -1.7
1,387,669 - -0.2
1,387,669 - -0.8
1,388,140 - -0.2
1,388,140 - -0.1
1,388,351 + -0.7
1,388,352 - -0.4
1,389,014 + RR42_RS06325 0.75 -0.5
1,389,014 + RR42_RS06325 0.75 -4.0
1,389,197 + -1.0
1,389,197 + +0.0
1,389,197 + +0.0
1,389,197 + +0.0
1,389,197 + +1.2
1,389,198 - +0.3
1,389,250 - -2.2
1,390,117 - +0.3

Or see this region's nucleotide sequence