Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04455 and RR42_RS04460 are separated by 117 nucleotides RR42_RS04460 and RR42_RS04465 are separated by 44 nucleotides
RR42_RS04455: RR42_RS04455 - MFS transporter, at 995,783 to 996,943
_RS04455
RR42_RS04460: RR42_RS04460 - chorismate mutase, at 997,061 to 998,200
_RS04460
RR42_RS04465: RR42_RS04465 - aspartate aminotransferase, at 998,245 to 999,360
_RS04465
Position (kb) 997
998
999 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 997.057 kb on + strand at 997.057 kb on + strand at 997.057 kb on + strand at 997.058 kb on - strand at 997.058 kb on - strand at 997.247 kb on + strand, within RR42_RS04460 at 997.247 kb on + strand, within RR42_RS04460 at 997.247 kb on + strand, within RR42_RS04460 at 997.326 kb on + strand, within RR42_RS04460 at 997.443 kb on - strand, within RR42_RS04460 at 997.739 kb on + strand, within RR42_RS04460 at 997.739 kb on + strand, within RR42_RS04460 at 997.994 kb on + strand, within RR42_RS04460 at 997.995 kb on - strand, within RR42_RS04460 at 998.078 kb on + strand, within RR42_RS04460 at 998.078 kb on + strand, within RR42_RS04460 at 998.078 kb on + strand, within RR42_RS04460 at 998.081 kb on + strand, within RR42_RS04460 at 998.081 kb on + strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.082 kb on - strand, within RR42_RS04460 at 998.088 kb on - strand at 998.162 kb on + strand at 998.163 kb on - strand at 998.278 kb on + strand at 998.299 kb on + strand at 998.597 kb on - strand, within RR42_RS04465 at 998.620 kb on + strand, within RR42_RS04465 at 998.737 kb on - strand, within RR42_RS04465 at 998.748 kb on + strand, within RR42_RS04465 at 998.748 kb on + strand, within RR42_RS04465 at 998.749 kb on - strand, within RR42_RS04465 at 998.749 kb on - strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.842 kb on + strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.843 kb on - strand, within RR42_RS04465 at 998.851 kb on + strand, within RR42_RS04465 at 998.851 kb on + strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.852 kb on - strand, within RR42_RS04465 at 998.873 kb on - strand, within RR42_RS04465 at 998.899 kb on + strand, within RR42_RS04465 at 998.900 kb on - strand, within RR42_RS04465 at 998.915 kb on + strand, within RR42_RS04465 at 998.938 kb on + strand, within RR42_RS04465 at 998.939 kb on - strand, within RR42_RS04465 at 998.966 kb on - strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.154 kb on + strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465 at 999.155 kb on - strand, within RR42_RS04465
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 997,057 + -0.8 997,057 + +0.2 997,057 + +0.3 997,058 - -2.4 997,058 - -3.8 997,247 + RR42_RS04460 0.16 -4.4 997,247 + RR42_RS04460 0.16 -1.9 997,247 + RR42_RS04460 0.16 -3.1 997,326 + RR42_RS04460 0.23 -1.0 997,443 - RR42_RS04460 0.34 -4.7 997,739 + RR42_RS04460 0.59 -4.3 997,739 + RR42_RS04460 0.59 -1.4 997,994 + RR42_RS04460 0.82 -1.4 997,995 - RR42_RS04460 0.82 -1.3 998,078 + RR42_RS04460 0.89 -4.3 998,078 + RR42_RS04460 0.89 -3.7 998,078 + RR42_RS04460 0.89 -1.3 998,081 + RR42_RS04460 0.89 -5.4 998,081 + RR42_RS04460 0.89 -1.7 998,082 - RR42_RS04460 0.90 -2.9 998,082 - RR42_RS04460 0.90 -3.3 998,082 - RR42_RS04460 0.90 -2.9 998,082 - RR42_RS04460 0.90 -4.9 998,082 - RR42_RS04460 0.90 -3.1 998,082 - RR42_RS04460 0.90 -1.3 998,088 - -3.3 998,162 + -5.1 998,163 - -1.9 998,278 + -0.3 998,299 + -0.1 998,597 - RR42_RS04465 0.32 -0.7 998,620 + RR42_RS04465 0.34 +0.5 998,737 - RR42_RS04465 0.44 -1.9 998,748 + RR42_RS04465 0.45 -0.8 998,748 + RR42_RS04465 0.45 +1.1 998,749 - RR42_RS04465 0.45 +0.8 998,749 - RR42_RS04465 0.45 +0.6 998,842 + RR42_RS04465 0.53 -0.1 998,842 + RR42_RS04465 0.53 -0.7 998,842 + RR42_RS04465 0.53 +0.4 998,843 - RR42_RS04465 0.54 +0.1 998,843 - RR42_RS04465 0.54 +0.7 998,843 - RR42_RS04465 0.54 -0.4 998,851 + RR42_RS04465 0.54 +0.1 998,851 + RR42_RS04465 0.54 -0.2 998,852 - RR42_RS04465 0.54 +0.3 998,852 - RR42_RS04465 0.54 -1.0 998,852 - RR42_RS04465 0.54 +0.4 998,852 - RR42_RS04465 0.54 -0.4 998,873 - RR42_RS04465 0.56 -1.3 998,899 + RR42_RS04465 0.59 -0.2 998,900 - RR42_RS04465 0.59 -0.5 998,915 + RR42_RS04465 0.60 -0.4 998,938 + RR42_RS04465 0.62 -0.1 998,939 - RR42_RS04465 0.62 +0.5 998,966 - RR42_RS04465 0.65 -0.3 999,154 + RR42_RS04465 0.81 +0.1 999,154 + RR42_RS04465 0.81 -0.7 999,154 + RR42_RS04465 0.81 +1.1 999,154 + RR42_RS04465 0.81 +0.6 999,154 + RR42_RS04465 0.81 -0.2 999,155 - RR42_RS04465 0.82 +0.8 999,155 - RR42_RS04465 0.82 +0.3 999,155 - RR42_RS04465 0.82 +0.2 999,155 - RR42_RS04465 0.82 -0.2 999,155 - RR42_RS04465 0.82 -0.4 999,155 - RR42_RS04465 0.82 +0.5 999,155 - RR42_RS04465 0.82 +0.0
Or see this region's nucleotide sequence