Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02440

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02430 and RR42_RS02435 are separated by 199 nucleotidesRR42_RS02435 and RR42_RS02440 are separated by 14 nucleotidesRR42_RS02440 and RR42_RS02445 are separated by 43 nucleotides RR42_RS02430: RR42_RS02430 - sodium:solute symporter, at 546,799 to 548,235 _RS02430 RR42_RS02435: RR42_RS02435 - FmdB family transcriptional regulator, at 548,435 to 548,794 _RS02435 RR42_RS02440: RR42_RS02440 - membrane protein, at 548,809 to 549,507 _RS02440 RR42_RS02445: RR42_RS02445 - aspartyl-tRNA synthetase, at 549,551 to 551,356 _RS02445 Position (kb) 548 549 550Strain fitness (log2 ratio) -2 -1 0 1at 547.837 kb on - strand, within RR42_RS02430at 547.849 kb on + strand, within RR42_RS02430at 547.978 kb on + strand, within RR42_RS02430at 547.979 kb on - strand, within RR42_RS02430at 547.980 kb on + strand, within RR42_RS02430at 547.981 kb on + strand, within RR42_RS02430at 547.981 kb on - strand, within RR42_RS02430at 547.981 kb on - strand, within RR42_RS02430at 547.981 kb on - strand, within RR42_RS02430at 548.434 kb on + strandat 548.444 kb on + strandat 549.093 kb on + strand, within RR42_RS02440at 549.385 kb on + strand, within RR42_RS02440

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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547,837 - RR42_RS02430 0.72 +0.4
547,849 + RR42_RS02430 0.73 -0.0
547,978 + RR42_RS02430 0.82 -0.7
547,979 - RR42_RS02430 0.82 -0.9
547,980 + RR42_RS02430 0.82 -0.1
547,981 + RR42_RS02430 0.82 -1.9
547,981 - RR42_RS02430 0.82 -0.2
547,981 - RR42_RS02430 0.82 -0.3
547,981 - RR42_RS02430 0.82 +0.2
548,434 + -1.1
548,444 + +0.7
549,093 + RR42_RS02440 0.41 -0.6
549,385 + RR42_RS02440 0.82 -1.1

Or see this region's nucleotide sequence