Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02430 and RR42_RS02435 are separated by 199 nucleotides RR42_RS02435 and RR42_RS02440 are separated by 14 nucleotides RR42_RS02440 and RR42_RS02445 are separated by 43 nucleotides
RR42_RS02430: RR42_RS02430 - sodium:solute symporter, at 546,799 to 548,235
_RS02430
RR42_RS02435: RR42_RS02435 - FmdB family transcriptional regulator, at 548,435 to 548,794
_RS02435
RR42_RS02440: RR42_RS02440 - membrane protein, at 548,809 to 549,507
_RS02440
RR42_RS02445: RR42_RS02445 - aspartyl-tRNA synthetase, at 549,551 to 551,356
_RS02445
Position (kb)
548
549
550 Strain fitness (log2 ratio)
-2
-1
0
1 at 547.837 kb on - strand, within RR42_RS02430 at 547.849 kb on + strand, within RR42_RS02430 at 547.978 kb on + strand, within RR42_RS02430 at 547.979 kb on - strand, within RR42_RS02430 at 547.980 kb on + strand, within RR42_RS02430 at 547.981 kb on + strand, within RR42_RS02430 at 547.981 kb on - strand, within RR42_RS02430 at 547.981 kb on - strand, within RR42_RS02430 at 547.981 kb on - strand, within RR42_RS02430 at 548.434 kb on + strand at 548.444 kb on + strand at 549.093 kb on + strand, within RR42_RS02440 at 549.385 kb on + strand, within RR42_RS02440
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 547,837 - RR42_RS02430 0.72 +0.4 547,849 + RR42_RS02430 0.73 -0.0 547,978 + RR42_RS02430 0.82 -0.7 547,979 - RR42_RS02430 0.82 -0.9 547,980 + RR42_RS02430 0.82 -0.1 547,981 + RR42_RS02430 0.82 -1.9 547,981 - RR42_RS02430 0.82 -0.2 547,981 - RR42_RS02430 0.82 -0.3 547,981 - RR42_RS02430 0.82 +0.2 548,434 + -1.1 548,444 + +0.7 549,093 + RR42_RS02440 0.41 -0.6 549,385 + RR42_RS02440 0.82 -1.1
Or see this region's nucleotide sequence