Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01950

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01940 and RR42_RS01945 are separated by 125 nucleotidesRR42_RS01945 and RR42_RS01950 are separated by 18 nucleotidesRR42_RS01950 and RR42_RS01955 are separated by 85 nucleotides RR42_RS01940: RR42_RS01940 - glycosyl transferase, at 434,726 to 435,754 _RS01940 RR42_RS01945: RR42_RS01945 - nitrate ABC transporter ATP-binding protein, at 435,880 to 436,683 _RS01945 RR42_RS01950: RR42_RS01950 - nitrate ABC transporter permease, at 436,702 to 437,640 _RS01950 RR42_RS01955: RR42_RS01955 - nitrate transporter, at 437,726 to 439,045 _RS01955 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1at 435.956 kb on + strandat 435.957 kb on - strandat 436.280 kb on + strand, within RR42_RS01945at 436.280 kb on + strand, within RR42_RS01945at 436.388 kb on + strand, within RR42_RS01945at 436.388 kb on + strand, within RR42_RS01945at 436.389 kb on - strand, within RR42_RS01945at 436.389 kb on - strand, within RR42_RS01945at 436.389 kb on - strand, within RR42_RS01945at 436.572 kb on + strand, within RR42_RS01945at 436.573 kb on - strand, within RR42_RS01945at 436.703 kb on + strandat 436.703 kb on + strandat 436.703 kb on + strandat 436.703 kb on + strandat 436.704 kb on - strandat 436.704 kb on - strandat 436.704 kb on - strandat 436.704 kb on - strandat 436.704 kb on - strandat 436.893 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.957 kb on - strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.004 kb on - strand, within RR42_RS01950at 437.004 kb on - strand, within RR42_RS01950at 437.073 kb on + strand, within RR42_RS01950at 437.074 kb on - strand, within RR42_RS01950at 437.319 kb on - strand, within RR42_RS01950at 437.434 kb on + strand, within RR42_RS01950at 437.862 kb on + strand, within RR42_RS01955at 437.863 kb on - strand, within RR42_RS01955at 437.863 kb on - strand, within RR42_RS01955at 437.863 kb on - strand, within RR42_RS01955at 437.901 kb on + strand, within RR42_RS01955at 437.902 kb on - strand, within RR42_RS01955at 437.976 kb on + strand, within RR42_RS01955at 437.976 kb on + strand, within RR42_RS01955at 437.977 kb on - strand, within RR42_RS01955at 437.997 kb on + strand, within RR42_RS01955at 437.997 kb on + strand, within RR42_RS01955at 437.997 kb on + strand, within RR42_RS01955at 437.997 kb on + strand, within RR42_RS01955at 438.046 kb on + strand, within RR42_RS01955at 438.047 kb on - strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.156 kb on + strand, within RR42_RS01955at 438.156 kb on + strand, within RR42_RS01955at 438.157 kb on - strand, within RR42_RS01955at 438.207 kb on + strand, within RR42_RS01955at 438.444 kb on + strand, within RR42_RS01955at 438.445 kb on - strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.448 kb on - strand, within RR42_RS01955at 438.495 kb on + strand, within RR42_RS01955

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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435,956 + +0.5
435,957 - -1.0
436,280 + RR42_RS01945 0.50 +0.2
436,280 + RR42_RS01945 0.50 -2.7
436,388 + RR42_RS01945 0.63 -0.4
436,388 + RR42_RS01945 0.63 -0.2
436,389 - RR42_RS01945 0.63 +0.2
436,389 - RR42_RS01945 0.63 -0.4
436,389 - RR42_RS01945 0.63 -2.7
436,572 + RR42_RS01945 0.86 -0.5
436,573 - RR42_RS01945 0.86 -0.1
436,703 + -0.6
436,703 + -0.9
436,703 + +0.5
436,703 + -0.9
436,704 - -0.6
436,704 - +0.3
436,704 - -0.5
436,704 - -0.3
436,704 - +0.6
436,893 + RR42_RS01950 0.20 +0.1
436,925 + RR42_RS01950 0.24 +0.6
436,925 + RR42_RS01950 0.24 +0.6
436,925 + RR42_RS01950 0.24 -0.4
436,925 + RR42_RS01950 0.24 +0.7
436,925 + RR42_RS01950 0.24 -1.2
436,926 - RR42_RS01950 0.24 -1.5
436,926 - RR42_RS01950 0.24 +0.7
436,926 - RR42_RS01950 0.24 -0.7
436,926 - RR42_RS01950 0.24 +0.5
436,926 - RR42_RS01950 0.24 +0.7
436,926 - RR42_RS01950 0.24 -0.2
436,957 - RR42_RS01950 0.27 +0.4
437,003 + RR42_RS01950 0.32 +1.3
437,003 + RR42_RS01950 0.32 +0.0
437,003 + RR42_RS01950 0.32 +1.0
437,003 + RR42_RS01950 0.32 +0.2
437,003 + RR42_RS01950 0.32 -0.5
437,004 - RR42_RS01950 0.32 +0.3
437,004 - RR42_RS01950 0.32 -0.1
437,073 + RR42_RS01950 0.40 -0.7
437,074 - RR42_RS01950 0.40 -0.2
437,319 - RR42_RS01950 0.66 +0.7
437,434 + RR42_RS01950 0.78 -1.6
437,862 + RR42_RS01955 0.10 +0.6
437,863 - RR42_RS01955 0.10 +0.0
437,863 - RR42_RS01955 0.10 -1.4
437,863 - RR42_RS01955 0.10 -0.8
437,901 + RR42_RS01955 0.13 -1.4
437,902 - RR42_RS01955 0.13 -0.4
437,976 + RR42_RS01955 0.19 -0.5
437,976 + RR42_RS01955 0.19 -1.2
437,977 - RR42_RS01955 0.19 -0.7
437,997 + RR42_RS01955 0.21 -1.8
437,997 + RR42_RS01955 0.21 +0.4
437,997 + RR42_RS01955 0.21 -3.0
437,997 + RR42_RS01955 0.21 -1.1
438,046 + RR42_RS01955 0.24 -0.8
438,047 - RR42_RS01955 0.24 -1.6
438,096 + RR42_RS01955 0.28 -2.7
438,096 + RR42_RS01955 0.28 +0.1
438,096 + RR42_RS01955 0.28 -0.6
438,096 + RR42_RS01955 0.28 -0.1
438,096 + RR42_RS01955 0.28 -1.0
438,096 + RR42_RS01955 0.28 -2.2
438,156 + RR42_RS01955 0.33 +0.0
438,156 + RR42_RS01955 0.33 -2.6
438,157 - RR42_RS01955 0.33 -0.5
438,207 + RR42_RS01955 0.36 -0.5
438,444 + RR42_RS01955 0.54 -1.1
438,445 - RR42_RS01955 0.54 -1.5
438,447 + RR42_RS01955 0.55 +1.1
438,447 + RR42_RS01955 0.55 -1.1
438,447 + RR42_RS01955 0.55 -0.6
438,447 + RR42_RS01955 0.55 +1.4
438,447 + RR42_RS01955 0.55 -1.1
438,447 + RR42_RS01955 0.55 -1.9
438,447 + RR42_RS01955 0.55 -0.6
438,448 - RR42_RS01955 0.55 -0.3
438,495 + RR42_RS01955 0.58 -1.4

Or see this region's nucleotide sequence