Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01000 and RR42_RS01005 are separated by 69 nucleotides RR42_RS01005 and RR42_RS01010 are separated by 291 nucleotides RR42_RS01010 and RR42_RS01015 are separated by 65 nucleotides
RR42_RS01000: RR42_RS01000 - hypothetical protein, at 234,950 to 237,358
_RS01000
RR42_RS01005: RR42_RS01005 - ABC transporter substrate-binding protein, at 237,428 to 239,014
_RS01005
RR42_RS01010: RR42_RS01010 - glutathione S-transferase, at 239,306 to 239,929
_RS01010
RR42_RS01015: RR42_RS01015 - TonB-dependent receptor, at 239,995 to 242,145
_RS01015
Position (kb) 237
238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 236.619 kb on + strand, within RR42_RS01000 at 236.724 kb on - strand, within RR42_RS01000 at 236.724 kb on - strand, within RR42_RS01000 at 236.975 kb on - strand, within RR42_RS01000 at 236.978 kb on + strand, within RR42_RS01000 at 236.979 kb on - strand, within RR42_RS01000 at 236.979 kb on - strand, within RR42_RS01000 at 237.191 kb on - strand at 237.290 kb on + strand at 237.291 kb on - strand at 237.422 kb on + strand at 237.456 kb on + strand at 237.457 kb on - strand at 237.490 kb on - strand at 237.490 kb on - strand at 237.509 kb on + strand at 237.509 kb on + strand at 237.510 kb on - strand at 237.510 kb on - strand at 237.510 kb on - strand at 237.525 kb on + strand at 237.544 kb on - strand at 237.649 kb on + strand, within RR42_RS01005 at 237.649 kb on + strand, within RR42_RS01005 at 237.649 kb on + strand, within RR42_RS01005 at 237.649 kb on + strand, within RR42_RS01005 at 237.650 kb on - strand, within RR42_RS01005 at 237.650 kb on - strand, within RR42_RS01005 at 237.650 kb on - strand, within RR42_RS01005 at 237.650 kb on - strand, within RR42_RS01005 at 237.650 kb on - strand, within RR42_RS01005 at 237.651 kb on + strand, within RR42_RS01005 at 237.693 kb on + strand, within RR42_RS01005 at 237.693 kb on + strand, within RR42_RS01005 at 237.693 kb on + strand, within RR42_RS01005 at 237.694 kb on - strand, within RR42_RS01005 at 237.694 kb on - strand, within RR42_RS01005 at 237.888 kb on + strand, within RR42_RS01005 at 237.888 kb on + strand, within RR42_RS01005 at 238.203 kb on + strand, within RR42_RS01005 at 238.204 kb on - strand, within RR42_RS01005 at 238.204 kb on - strand, within RR42_RS01005 at 238.358 kb on + strand, within RR42_RS01005 at 238.389 kb on + strand, within RR42_RS01005 at 238.389 kb on + strand, within RR42_RS01005 at 238.389 kb on + strand, within RR42_RS01005 at 238.390 kb on - strand, within RR42_RS01005 at 238.390 kb on - strand, within RR42_RS01005 at 238.390 kb on - strand, within RR42_RS01005 at 238.446 kb on + strand, within RR42_RS01005 at 238.447 kb on - strand, within RR42_RS01005 at 238.527 kb on + strand, within RR42_RS01005 at 238.527 kb on + strand, within RR42_RS01005 at 238.527 kb on + strand, within RR42_RS01005 at 238.527 kb on + strand, within RR42_RS01005 at 238.527 kb on + strand, within RR42_RS01005 at 238.527 kb on + strand, within RR42_RS01005 at 238.527 kb on + strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.528 kb on - strand, within RR42_RS01005 at 238.629 kb on + strand, within RR42_RS01005 at 238.630 kb on - strand, within RR42_RS01005 at 238.630 kb on - strand, within RR42_RS01005 at 238.630 kb on - strand, within RR42_RS01005 at 238.683 kb on + strand, within RR42_RS01005 at 238.840 kb on + strand, within RR42_RS01005 at 238.840 kb on + strand, within RR42_RS01005 at 238.840 kb on + strand, within RR42_RS01005 at 238.840 kb on + strand, within RR42_RS01005 at 238.840 kb on + strand, within RR42_RS01005 at 238.840 kb on + strand, within RR42_RS01005 at 238.841 kb on - strand, within RR42_RS01005 at 238.841 kb on - strand, within RR42_RS01005 at 238.841 kb on - strand, within RR42_RS01005 at 238.878 kb on + strand at 239.030 kb on - strand at 239.211 kb on + strand at 239.261 kb on + strand at 239.261 kb on + strand at 239.263 kb on + strand at 239.719 kb on + strand, within RR42_RS01010 at 239.720 kb on - strand, within RR42_RS01010 at 239.720 kb on - strand, within RR42_RS01010 at 239.759 kb on + strand, within RR42_RS01010 at 239.759 kb on + strand, within RR42_RS01010 at 239.760 kb on - strand, within RR42_RS01010 at 239.822 kb on + strand, within RR42_RS01010 at 239.822 kb on + strand, within RR42_RS01010 at 239.823 kb on - strand, within RR42_RS01010 at 239.823 kb on - strand, within RR42_RS01010 at 239.823 kb on - strand, within RR42_RS01010 at 239.850 kb on - strand, within RR42_RS01010 at 239.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 236,619 + RR42_RS01000 0.69 -0.0 236,724 - RR42_RS01000 0.74 +0.0 236,724 - RR42_RS01000 0.74 +0.6 236,975 - RR42_RS01000 0.84 -0.4 236,978 + RR42_RS01000 0.84 +0.6 236,979 - RR42_RS01000 0.84 -1.0 236,979 - RR42_RS01000 0.84 +0.6 237,191 - -0.4 237,290 + -0.6 237,291 - -0.6 237,422 + -1.8 237,456 + +1.2 237,457 - +0.9 237,490 - +0.5 237,490 - -0.2 237,509 + +0.1 237,509 + +0.7 237,510 - +1.5 237,510 - +0.9 237,510 - -0.2 237,525 + +0.0 237,544 - +0.3 237,649 + RR42_RS01005 0.14 -0.1 237,649 + RR42_RS01005 0.14 +0.4 237,649 + RR42_RS01005 0.14 +0.7 237,649 + RR42_RS01005 0.14 +0.3 237,650 - RR42_RS01005 0.14 +1.0 237,650 - RR42_RS01005 0.14 -0.7 237,650 - RR42_RS01005 0.14 +0.6 237,650 - RR42_RS01005 0.14 -1.2 237,650 - RR42_RS01005 0.14 -0.1 237,651 + RR42_RS01005 0.14 +1.3 237,693 + RR42_RS01005 0.17 +0.3 237,693 + RR42_RS01005 0.17 +0.1 237,693 + RR42_RS01005 0.17 +0.1 237,694 - RR42_RS01005 0.17 +0.5 237,694 - RR42_RS01005 0.17 -0.3 237,888 + RR42_RS01005 0.29 -0.2 237,888 + RR42_RS01005 0.29 -0.4 238,203 + RR42_RS01005 0.49 -0.0 238,204 - RR42_RS01005 0.49 +1.8 238,204 - RR42_RS01005 0.49 +0.8 238,358 + RR42_RS01005 0.59 +0.1 238,389 + RR42_RS01005 0.61 +1.0 238,389 + RR42_RS01005 0.61 +0.5 238,389 + RR42_RS01005 0.61 -1.8 238,390 - RR42_RS01005 0.61 +0.5 238,390 - RR42_RS01005 0.61 +0.1 238,390 - RR42_RS01005 0.61 +0.4 238,446 + RR42_RS01005 0.64 +0.1 238,447 - RR42_RS01005 0.64 +0.1 238,527 + RR42_RS01005 0.69 +0.7 238,527 + RR42_RS01005 0.69 +0.8 238,527 + RR42_RS01005 0.69 -0.2 238,527 + RR42_RS01005 0.69 +0.0 238,527 + RR42_RS01005 0.69 -0.9 238,527 + RR42_RS01005 0.69 +0.5 238,527 + RR42_RS01005 0.69 -0.3 238,528 - RR42_RS01005 0.69 -0.1 238,528 - RR42_RS01005 0.69 +0.7 238,528 - RR42_RS01005 0.69 -1.0 238,528 - RR42_RS01005 0.69 -0.1 238,528 - RR42_RS01005 0.69 +0.2 238,528 - RR42_RS01005 0.69 +0.2 238,528 - RR42_RS01005 0.69 -1.6 238,528 - RR42_RS01005 0.69 +3.5 238,528 - RR42_RS01005 0.69 -1.7 238,629 + RR42_RS01005 0.76 +0.1 238,630 - RR42_RS01005 0.76 -1.6 238,630 - RR42_RS01005 0.76 -0.3 238,630 - RR42_RS01005 0.76 -0.3 238,683 + RR42_RS01005 0.79 -0.1 238,840 + RR42_RS01005 0.89 +0.1 238,840 + RR42_RS01005 0.89 -0.3 238,840 + RR42_RS01005 0.89 -0.7 238,840 + RR42_RS01005 0.89 +1.3 238,840 + RR42_RS01005 0.89 +2.4 238,840 + RR42_RS01005 0.89 +0.5 238,841 - RR42_RS01005 0.89 +0.0 238,841 - RR42_RS01005 0.89 +0.8 238,841 - RR42_RS01005 0.89 -2.3 238,878 + +0.1 239,030 - +0.8 239,211 + +0.0 239,261 + -0.5 239,261 + -0.0 239,263 + -0.3 239,719 + RR42_RS01010 0.66 -1.0 239,720 - RR42_RS01010 0.66 +0.7 239,720 - RR42_RS01010 0.66 +0.4 239,759 + RR42_RS01010 0.73 +1.2 239,759 + RR42_RS01010 0.73 -1.3 239,760 - RR42_RS01010 0.73 +0.5 239,822 + RR42_RS01010 0.83 +0.6 239,822 + RR42_RS01010 0.83 -0.8 239,823 - RR42_RS01010 0.83 -0.4 239,823 - RR42_RS01010 0.83 -1.2 239,823 - RR42_RS01010 0.83 -1.0 239,850 - RR42_RS01010 0.87 +0.8 239,868 - +0.1
Or see this region's nucleotide sequence