Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00540 and RR42_RS00545 are separated by 83 nucleotides RR42_RS00545 and RR42_RS00550 are separated by 78 nucleotides
RR42_RS00540: RR42_RS00540 - hypothetical protein, at 142,940 to 145,594
_RS00540
RR42_RS00545: RR42_RS00545 - transglutaminase, at 145,678 to 146,553
_RS00545
RR42_RS00550: RR42_RS00550 - hypothetical protein, at 146,632 to 147,564
_RS00550
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.852 kb on + strand, within RR42_RS00540 at 144.853 kb on - strand, within RR42_RS00540 at 144.989 kb on + strand, within RR42_RS00540 at 144.990 kb on - strand, within RR42_RS00540 at 144.990 kb on - strand, within RR42_RS00540 at 144.990 kb on - strand, within RR42_RS00540 at 144.990 kb on - strand, within RR42_RS00540 at 144.990 kb on - strand, within RR42_RS00540 at 145.469 kb on + strand at 145.469 kb on + strand at 145.469 kb on + strand at 145.488 kb on + strand at 145.705 kb on + strand at 145.705 kb on + strand at 145.705 kb on + strand at 145.706 kb on - strand at 145.706 kb on - strand at 145.706 kb on - strand at 145.711 kb on + strand at 145.712 kb on - strand at 145.862 kb on - strand, within RR42_RS00545 at 145.862 kb on - strand, within RR42_RS00545 at 145.888 kb on + strand, within RR42_RS00545 at 145.888 kb on + strand, within RR42_RS00545 at 145.889 kb on - strand, within RR42_RS00545 at 146.162 kb on - strand, within RR42_RS00545 at 146.288 kb on - strand, within RR42_RS00545 at 146.465 kb on - strand, within RR42_RS00545 at 146.466 kb on + strand at 146.467 kb on - strand at 146.551 kb on + strand at 146.552 kb on - strand at 146.598 kb on + strand at 146.599 kb on - strand at 146.636 kb on + strand at 146.636 kb on + strand at 146.636 kb on + strand at 146.636 kb on + strand at 146.637 kb on - strand at 146.637 kb on - strand at 146.637 kb on - strand at 146.719 kb on + strand at 146.719 kb on + strand at 146.719 kb on + strand at 146.720 kb on - strand at 146.720 kb on - strand at 147.062 kb on + strand, within RR42_RS00550 at 147.063 kb on - strand, within RR42_RS00550 at 147.063 kb on - strand, within RR42_RS00550 at 147.107 kb on - strand, within RR42_RS00550 at 147.107 kb on - strand, within RR42_RS00550 at 147.107 kb on - strand, within RR42_RS00550 at 147.214 kb on + strand, within RR42_RS00550 at 147.214 kb on + strand, within RR42_RS00550 at 147.214 kb on + strand, within RR42_RS00550 at 147.215 kb on - strand, within RR42_RS00550 at 147.215 kb on - strand, within RR42_RS00550 at 147.215 kb on - strand, within RR42_RS00550 at 147.259 kb on + strand, within RR42_RS00550 at 147.259 kb on + strand, within RR42_RS00550 at 147.260 kb on - strand, within RR42_RS00550 at 147.260 kb on - strand, within RR42_RS00550 at 147.260 kb on - strand, within RR42_RS00550 at 147.260 kb on - strand, within RR42_RS00550 at 147.272 kb on - strand, within RR42_RS00550
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 144,852 + RR42_RS00540 0.72 -0.9 144,853 - RR42_RS00540 0.72 -0.1 144,989 + RR42_RS00540 0.77 +0.5 144,990 - RR42_RS00540 0.77 -0.1 144,990 - RR42_RS00540 0.77 -1.7 144,990 - RR42_RS00540 0.77 -0.6 144,990 - RR42_RS00540 0.77 -0.3 144,990 - RR42_RS00540 0.77 -0.7 145,469 + +0.1 145,469 + -0.4 145,469 + -0.2 145,488 + +0.6 145,705 + +2.3 145,705 + -0.4 145,705 + -0.1 145,706 - +0.2 145,706 - +0.0 145,706 - +0.6 145,711 + -1.5 145,712 - -0.3 145,862 - RR42_RS00545 0.21 -2.6 145,862 - RR42_RS00545 0.21 +0.0 145,888 + RR42_RS00545 0.24 -1.7 145,888 + RR42_RS00545 0.24 -0.1 145,889 - RR42_RS00545 0.24 -1.1 146,162 - RR42_RS00545 0.55 +0.6 146,288 - RR42_RS00545 0.70 -0.7 146,465 - RR42_RS00545 0.90 -1.7 146,466 + -1.8 146,467 - -0.7 146,551 + +0.5 146,552 - -0.7 146,598 + -1.1 146,599 - +0.1 146,636 + +1.6 146,636 + +0.2 146,636 + +0.6 146,636 + -0.7 146,637 - -0.6 146,637 - +1.0 146,637 - -0.2 146,719 + +0.1 146,719 + +0.3 146,719 + -0.0 146,720 - +0.0 146,720 - -0.6 147,062 + RR42_RS00550 0.46 +0.6 147,063 - RR42_RS00550 0.46 +0.1 147,063 - RR42_RS00550 0.46 +0.5 147,107 - RR42_RS00550 0.51 +1.2 147,107 - RR42_RS00550 0.51 +0.7 147,107 - RR42_RS00550 0.51 +0.4 147,214 + RR42_RS00550 0.62 +0.6 147,214 + RR42_RS00550 0.62 +0.5 147,214 + RR42_RS00550 0.62 -0.2 147,215 - RR42_RS00550 0.62 -0.5 147,215 - RR42_RS00550 0.62 +0.1 147,215 - RR42_RS00550 0.62 -1.2 147,259 + RR42_RS00550 0.67 +0.5 147,259 + RR42_RS00550 0.67 +0.6 147,260 - RR42_RS00550 0.67 -0.2 147,260 - RR42_RS00550 0.67 -0.8 147,260 - RR42_RS00550 0.67 -1.6 147,260 - RR42_RS00550 0.67 -0.5 147,272 - RR42_RS00550 0.69 +0.4
Or see this region's nucleotide sequence