Experiment: L-Lysine 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2083 and Ga0059261_2084 are separated by 118 nucleotides Ga0059261_2084 and Ga0059261_2085 overlap by 14 nucleotides Ga0059261_2085 and Ga0059261_2086 are separated by 67 nucleotides Ga0059261_2086 and Ga0059261_2087 are separated by 13 nucleotides Ga0059261_2087 and Ga0059261_2088 overlap by 4 nucleotides
Ga0059261_2083: Ga0059261_2083 - hypothetical protein, at 2,181,860 to 2,182,783
_2083
Ga0059261_2084: Ga0059261_2084 - FlgN protein, at 2,182,902 to 2,183,222
_2084
Ga0059261_2085: Ga0059261_2085 - anti-sigma-28 factor, FlgM family, at 2,183,209 to 2,183,496
_2085
Ga0059261_2086: Ga0059261_2086 - SAF-like, at 2,183,564 to 2,184,085
_2086
Ga0059261_2087: Ga0059261_2087 - OmpA family, at 2,184,099 to 2,184,617
_2087
Ga0059261_2088: Ga0059261_2088 - Flagellar motor component, at 2,184,614 to 2,185,306
_2088
Position (kb)
2183
2184
2185 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2182.566 kb on + strand, within Ga0059261_2083 at 2182.567 kb on - strand, within Ga0059261_2083 at 2182.567 kb on - strand, within Ga0059261_2083 at 2182.644 kb on + strand, within Ga0059261_2083 at 2182.644 kb on + strand, within Ga0059261_2083 at 2182.644 kb on + strand, within Ga0059261_2083 at 2182.644 kb on + strand, within Ga0059261_2083 at 2182.644 kb on + strand, within Ga0059261_2083 at 2182.644 kb on + strand, within Ga0059261_2083 at 2182.644 kb on + strand, within Ga0059261_2083 at 2182.645 kb on - strand, within Ga0059261_2083 at 2182.645 kb on - strand, within Ga0059261_2083 at 2182.645 kb on - strand, within Ga0059261_2083 at 2182.645 kb on - strand, within Ga0059261_2083 at 2182.645 kb on - strand, within Ga0059261_2083 at 2182.838 kb on + strand at 2182.838 kb on + strand at 2182.838 kb on + strand at 2182.838 kb on + strand at 2182.838 kb on + strand at 2182.838 kb on + strand at 2182.838 kb on + strand at 2182.838 kb on + strand at 2182.838 kb on + strand at 2182.839 kb on - strand at 2182.843 kb on + strand at 2182.843 kb on + strand at 2182.844 kb on - strand at 2182.844 kb on - strand at 2182.933 kb on + strand at 2183.002 kb on + strand, within Ga0059261_2084 at 2183.002 kb on + strand, within Ga0059261_2084 at 2183.002 kb on + strand, within Ga0059261_2084 at 2183.002 kb on + strand, within Ga0059261_2084 at 2183.002 kb on + strand, within Ga0059261_2084 at 2183.002 kb on + strand, within Ga0059261_2084 at 2183.003 kb on - strand, within Ga0059261_2084 at 2183.003 kb on - strand, within Ga0059261_2084 at 2183.003 kb on - strand, within Ga0059261_2084 at 2183.003 kb on - strand, within Ga0059261_2084 at 2183.003 kb on - strand, within Ga0059261_2084 at 2183.510 kb on + strand at 2183.510 kb on + strand at 2183.510 kb on + strand at 2183.510 kb on + strand at 2183.523 kb on + strand at 2183.523 kb on + strand at 2183.523 kb on + strand at 2183.523 kb on + strand at 2183.523 kb on + strand at 2183.523 kb on + strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.524 kb on - strand at 2183.554 kb on + strand at 2183.554 kb on + strand at 2183.732 kb on + strand, within Ga0059261_2086 at 2184.768 kb on + strand, within Ga0059261_2088 at 2184.768 kb on + strand, within Ga0059261_2088 at 2184.768 kb on + strand, within Ga0059261_2088 at 2184.768 kb on + strand, within Ga0059261_2088 at 2184.769 kb on - strand, within Ga0059261_2088 at 2184.769 kb on - strand, within Ga0059261_2088
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 25 mM remove 2,182,566 + Ga0059261_2083 0.76 +0.1 2,182,567 - Ga0059261_2083 0.77 -0.5 2,182,567 - Ga0059261_2083 0.77 -0.2 2,182,644 + Ga0059261_2083 0.85 -0.3 2,182,644 + Ga0059261_2083 0.85 -0.5 2,182,644 + Ga0059261_2083 0.85 +0.5 2,182,644 + Ga0059261_2083 0.85 +0.3 2,182,644 + Ga0059261_2083 0.85 -0.8 2,182,644 + Ga0059261_2083 0.85 -0.2 2,182,644 + Ga0059261_2083 0.85 +0.3 2,182,645 - Ga0059261_2083 0.85 +1.0 2,182,645 - Ga0059261_2083 0.85 -0.2 2,182,645 - Ga0059261_2083 0.85 +1.2 2,182,645 - Ga0059261_2083 0.85 +0.1 2,182,645 - Ga0059261_2083 0.85 -0.2 2,182,838 + +1.8 2,182,838 + +0.0 2,182,838 + -0.1 2,182,838 + +1.5 2,182,838 + -1.3 2,182,838 + -0.3 2,182,838 + -0.6 2,182,838 + -1.9 2,182,838 + -0.1 2,182,839 - +0.2 2,182,843 + -0.3 2,182,843 + -0.1 2,182,844 - -0.7 2,182,844 - -0.4 2,182,933 + +0.2 2,183,002 + Ga0059261_2084 0.31 -0.2 2,183,002 + Ga0059261_2084 0.31 -0.4 2,183,002 + Ga0059261_2084 0.31 +0.4 2,183,002 + Ga0059261_2084 0.31 +0.5 2,183,002 + Ga0059261_2084 0.31 -0.4 2,183,002 + Ga0059261_2084 0.31 +0.1 2,183,003 - Ga0059261_2084 0.31 +0.4 2,183,003 - Ga0059261_2084 0.31 -0.9 2,183,003 - Ga0059261_2084 0.31 -0.2 2,183,003 - Ga0059261_2084 0.31 -0.2 2,183,003 - Ga0059261_2084 0.31 -0.4 2,183,510 + -0.6 2,183,510 + +0.5 2,183,510 + +0.5 2,183,510 + +0.1 2,183,523 + +0.2 2,183,523 + -0.0 2,183,523 + +0.1 2,183,523 + -1.7 2,183,523 + -1.7 2,183,523 + +1.2 2,183,524 - +0.3 2,183,524 - +0.6 2,183,524 - -0.4 2,183,524 - +0.1 2,183,524 - +0.6 2,183,524 - +0.6 2,183,524 - -0.4 2,183,524 - +0.4 2,183,524 - -0.5 2,183,524 - +0.4 2,183,554 + +0.3 2,183,554 + -0.8 2,183,732 + Ga0059261_2086 0.32 +0.2 2,184,768 + Ga0059261_2088 0.22 +0.6 2,184,768 + Ga0059261_2088 0.22 +0.1 2,184,768 + Ga0059261_2088 0.22 +1.1 2,184,768 + Ga0059261_2088 0.22 -0.6 2,184,769 - Ga0059261_2088 0.22 -0.1 2,184,769 - Ga0059261_2088 0.22 +0.3
Or see this region's nucleotide sequence