Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1620

Experiment: L-Lysine 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1619 and Ga0059261_1620 are separated by 43 nucleotidesGa0059261_1620 and Ga0059261_1621 are separated by 16 nucleotides Ga0059261_1619: Ga0059261_1619 - hypothetical protein, at 1,696,654 to 1,697,721 _1619 Ga0059261_1620: Ga0059261_1620 - Predicted S-adenosylmethionine-dependent methyltransferase, at 1,697,765 to 1,698,445 _1620 Ga0059261_1621: Ga0059261_1621 - Predicted dehydrogenases and related proteins, at 1,698,462 to 1,699,385 _1621 Position (kb) 1697 1698 1699Strain fitness (log2 ratio) -1 0 1 2 3at 1696.767 kb on + strand, within Ga0059261_1619at 1696.767 kb on + strand, within Ga0059261_1619at 1696.768 kb on - strand, within Ga0059261_1619at 1696.768 kb on - strand, within Ga0059261_1619at 1696.788 kb on + strand, within Ga0059261_1619at 1696.789 kb on - strand, within Ga0059261_1619at 1696.789 kb on - strand, within Ga0059261_1619at 1696.825 kb on + strand, within Ga0059261_1619at 1696.825 kb on + strandat 1696.825 kb on + strand, within Ga0059261_1619at 1696.825 kb on + strand, within Ga0059261_1619at 1696.825 kb on + strand, within Ga0059261_1619at 1696.825 kb on + strand, within Ga0059261_1619at 1696.826 kb on - strand, within Ga0059261_1619at 1696.826 kb on - strand, within Ga0059261_1619at 1696.826 kb on - strand, within Ga0059261_1619at 1696.858 kb on + strand, within Ga0059261_1619at 1696.859 kb on - strand, within Ga0059261_1619at 1696.859 kb on - strand, within Ga0059261_1619at 1696.886 kb on + strand, within Ga0059261_1619at 1696.886 kb on + strand, within Ga0059261_1619at 1696.887 kb on - strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.894 kb on + strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.895 kb on - strand, within Ga0059261_1619at 1696.896 kb on + strand, within Ga0059261_1619at 1696.896 kb on + strand, within Ga0059261_1619at 1696.896 kb on + strand, within Ga0059261_1619at 1696.896 kb on + strand, within Ga0059261_1619at 1696.896 kb on + strand, within Ga0059261_1619at 1696.897 kb on - strandat 1696.897 kb on - strand, within Ga0059261_1619at 1696.897 kb on - strand, within Ga0059261_1619at 1696.897 kb on - strand, within Ga0059261_1619at 1696.897 kb on - strand, within Ga0059261_1619at 1696.897 kb on - strand, within Ga0059261_1619at 1696.897 kb on - strand, within Ga0059261_1619at 1696.897 kb on - strand, within Ga0059261_1619at 1696.897 kb on - strand, within Ga0059261_1619at 1696.900 kb on + strand, within Ga0059261_1619at 1696.900 kb on + strand, within Ga0059261_1619at 1696.900 kb on + strand, within Ga0059261_1619at 1696.901 kb on - strand, within Ga0059261_1619at 1696.901 kb on - strand, within Ga0059261_1619at 1696.901 kb on - strand, within Ga0059261_1619at 1696.901 kb on - strand, within Ga0059261_1619at 1697.132 kb on - strand, within Ga0059261_1619at 1697.132 kb on - strand, within Ga0059261_1619at 1697.429 kb on - strand, within Ga0059261_1619at 1697.455 kb on + strand, within Ga0059261_1619at 1697.455 kb on + strand, within Ga0059261_1619at 1697.455 kb on + strand, within Ga0059261_1619at 1697.455 kb on + strand, within Ga0059261_1619at 1697.455 kb on + strand, within Ga0059261_1619at 1697.456 kb on - strand, within Ga0059261_1619at 1697.456 kb on - strand, within Ga0059261_1619at 1697.456 kb on - strand, within Ga0059261_1619at 1697.456 kb on - strand, within Ga0059261_1619at 1697.456 kb on - strand, within Ga0059261_1619at 1697.511 kb on + strandat 1697.511 kb on + strand, within Ga0059261_1619at 1697.511 kb on + strand, within Ga0059261_1619at 1697.512 kb on - strand, within Ga0059261_1619at 1697.564 kb on + strandat 1697.564 kb on + strand, within Ga0059261_1619at 1697.564 kb on + strand, within Ga0059261_1619at 1697.564 kb on + strand, within Ga0059261_1619at 1697.565 kb on - strand, within Ga0059261_1619at 1697.565 kb on - strand, within Ga0059261_1619at 1697.565 kb on - strand, within Ga0059261_1619at 1697.565 kb on - strand, within Ga0059261_1619at 1697.565 kb on - strand, within Ga0059261_1619at 1697.565 kb on - strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.596 kb on + strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.597 kb on - strand, within Ga0059261_1619at 1697.720 kb on - strandat 1697.720 kb on - strandat 1697.720 kb on - strandat 1697.720 kb on - strandat 1697.752 kb on - strandat 1697.796 kb on - strandat 1697.796 kb on - strandat 1697.796 kb on - strandat 1697.999 kb on - strand, within Ga0059261_1620at 1698.046 kb on + strand, within Ga0059261_1620at 1698.047 kb on - strand, within Ga0059261_1620at 1698.072 kb on + strand, within Ga0059261_1620at 1698.072 kb on + strand, within Ga0059261_1620at 1698.072 kb on + strand, within Ga0059261_1620at 1698.072 kb on + strand, within Ga0059261_1620at 1698.072 kb on + strand, within Ga0059261_1620at 1698.073 kb on - strand, within Ga0059261_1620at 1698.073 kb on - strand, within Ga0059261_1620at 1698.073 kb on - strand, within Ga0059261_1620at 1698.073 kb on - strand, within Ga0059261_1620at 1698.082 kb on + strand, within Ga0059261_1620at 1698.082 kb on + strand, within Ga0059261_1620at 1698.083 kb on - strand, within Ga0059261_1620at 1698.083 kb on - strand, within Ga0059261_1620at 1698.140 kb on + strand, within Ga0059261_1620at 1698.140 kb on + strand, within Ga0059261_1620at 1698.140 kb on + strand, within Ga0059261_1620at 1698.140 kb on + strand, within Ga0059261_1620at 1698.140 kb on + strand, within Ga0059261_1620at 1698.141 kb on - strand, within Ga0059261_1620at 1698.141 kb on - strand, within Ga0059261_1620at 1698.141 kb on - strand, within Ga0059261_1620at 1698.141 kb on - strand, within Ga0059261_1620at 1698.141 kb on - strand, within Ga0059261_1620at 1698.275 kb on + strand, within Ga0059261_1620at 1698.275 kb on + strand, within Ga0059261_1620at 1698.275 kb on + strand, within Ga0059261_1620at 1698.275 kb on + strand, within Ga0059261_1620at 1698.276 kb on - strand, within Ga0059261_1620at 1698.276 kb on - strand, within Ga0059261_1620at 1698.276 kb on - strand, within Ga0059261_1620at 1698.276 kb on - strand, within Ga0059261_1620at 1698.276 kb on - strand, within Ga0059261_1620at 1698.383 kb on + strandat 1698.383 kb on + strandat 1698.422 kb on + strandat 1698.422 kb on + strandat 1698.423 kb on - strandat 1698.423 kb on - strandat 1698.463 kb on + strandat 1698.583 kb on + strand, within Ga0059261_1621at 1698.584 kb on - strand, within Ga0059261_1621at 1698.595 kb on + strand, within Ga0059261_1621at 1698.595 kb on + strand, within Ga0059261_1621at 1698.595 kb on + strand, within Ga0059261_1621at 1698.595 kb on + strand, within Ga0059261_1621at 1698.659 kb on + strand, within Ga0059261_1621at 1698.660 kb on - strand, within Ga0059261_1621at 1698.660 kb on - strand, within Ga0059261_1621at 1698.666 kb on + strand, within Ga0059261_1621at 1698.666 kb on + strand, within Ga0059261_1621at 1698.667 kb on - strand, within Ga0059261_1621at 1699.045 kb on + strand, within Ga0059261_1621at 1699.066 kb on + strand, within Ga0059261_1621at 1699.066 kb on + strand, within Ga0059261_1621at 1699.066 kb on + strand, within Ga0059261_1621at 1699.066 kb on + strand, within Ga0059261_1621at 1699.067 kb on - strand, within Ga0059261_1621at 1699.067 kb on - strand, within Ga0059261_1621at 1699.067 kb on - strand, within Ga0059261_1621at 1699.067 kb on - strand, within Ga0059261_1621at 1699.067 kb on - strand, within Ga0059261_1621at 1699.067 kb on - strand, within Ga0059261_1621at 1699.238 kb on + strand, within Ga0059261_1621at 1699.238 kb on + strand, within Ga0059261_1621at 1699.239 kb on - strand, within Ga0059261_1621at 1699.239 kb on - strand, within Ga0059261_1621at 1699.405 kb on + strandat 1699.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 25 mM
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1,696,767 + Ga0059261_1619 0.11 +0.6
1,696,767 + Ga0059261_1619 0.11 +0.6
1,696,768 - Ga0059261_1619 0.11 +0.8
1,696,768 - Ga0059261_1619 0.11 -0.2
1,696,788 + Ga0059261_1619 0.13 +1.5
1,696,789 - Ga0059261_1619 0.13 +0.8
1,696,789 - Ga0059261_1619 0.13 -0.8
1,696,825 + Ga0059261_1619 0.16 +0.3
1,696,825 + +0.2
1,696,825 + Ga0059261_1619 0.16 -0.2
1,696,825 + Ga0059261_1619 0.16 +0.8
1,696,825 + Ga0059261_1619 0.16 -1.1
1,696,825 + Ga0059261_1619 0.16 -0.4
1,696,826 - Ga0059261_1619 0.16 +0.1
1,696,826 - Ga0059261_1619 0.16 -0.3
1,696,826 - Ga0059261_1619 0.16 +0.5
1,696,858 + Ga0059261_1619 0.19 +0.7
1,696,859 - Ga0059261_1619 0.19 +0.9
1,696,859 - Ga0059261_1619 0.19 +1.4
1,696,886 + Ga0059261_1619 0.22 -0.6
1,696,886 + Ga0059261_1619 0.22 -0.4
1,696,887 - Ga0059261_1619 0.22 +1.4
1,696,894 + Ga0059261_1619 0.22 -0.4
1,696,894 + Ga0059261_1619 0.22 +1.2
1,696,894 + Ga0059261_1619 0.22 +0.2
1,696,894 + Ga0059261_1619 0.22 -0.4
1,696,894 + Ga0059261_1619 0.22 -0.3
1,696,894 + Ga0059261_1619 0.22 -1.0
1,696,894 + Ga0059261_1619 0.22 -0.3
1,696,894 + Ga0059261_1619 0.22 -0.5
1,696,894 + Ga0059261_1619 0.22 +0.3
1,696,894 + Ga0059261_1619 0.22 -0.6
1,696,894 + Ga0059261_1619 0.22 +0.1
1,696,894 + Ga0059261_1619 0.22 +0.0
1,696,895 - Ga0059261_1619 0.23 +0.8
1,696,895 - Ga0059261_1619 0.23 +0.3
1,696,895 - Ga0059261_1619 0.23 +0.1
1,696,895 - Ga0059261_1619 0.23 +0.2
1,696,895 - Ga0059261_1619 0.23 -1.5
1,696,895 - Ga0059261_1619 0.23 +0.0
1,696,895 - Ga0059261_1619 0.23 -0.0
1,696,895 - Ga0059261_1619 0.23 +3.1
1,696,895 - Ga0059261_1619 0.23 +0.1
1,696,895 - Ga0059261_1619 0.23 -0.8
1,696,895 - Ga0059261_1619 0.23 +0.6
1,696,895 - Ga0059261_1619 0.23 -0.4
1,696,895 - Ga0059261_1619 0.23 -0.0
1,696,895 - Ga0059261_1619 0.23 +2.8
1,696,896 + Ga0059261_1619 0.23 +0.2
1,696,896 + Ga0059261_1619 0.23 -0.3
1,696,896 + Ga0059261_1619 0.23 -0.4
1,696,896 + Ga0059261_1619 0.23 -0.6
1,696,896 + Ga0059261_1619 0.23 -0.5
1,696,897 - +2.2
1,696,897 - Ga0059261_1619 0.23 +0.6
1,696,897 - Ga0059261_1619 0.23 -0.4
1,696,897 - Ga0059261_1619 0.23 -1.1
1,696,897 - Ga0059261_1619 0.23 +0.6
1,696,897 - Ga0059261_1619 0.23 -0.4
1,696,897 - Ga0059261_1619 0.23 -0.4
1,696,897 - Ga0059261_1619 0.23 -0.3
1,696,897 - Ga0059261_1619 0.23 -0.1
1,696,900 + Ga0059261_1619 0.23 -0.4
1,696,900 + Ga0059261_1619 0.23 -0.1
1,696,900 + Ga0059261_1619 0.23 -0.3
1,696,901 - Ga0059261_1619 0.23 +0.6
1,696,901 - Ga0059261_1619 0.23 +0.3
1,696,901 - Ga0059261_1619 0.23 +0.3
1,696,901 - Ga0059261_1619 0.23 +0.3
1,697,132 - Ga0059261_1619 0.45 -0.5
1,697,132 - Ga0059261_1619 0.45 -0.1
1,697,429 - Ga0059261_1619 0.73 +0.8
1,697,455 + Ga0059261_1619 0.75 +0.1
1,697,455 + Ga0059261_1619 0.75 +0.1
1,697,455 + Ga0059261_1619 0.75 -1.5
1,697,455 + Ga0059261_1619 0.75 -0.2
1,697,455 + Ga0059261_1619 0.75 +0.3
1,697,456 - Ga0059261_1619 0.75 -0.9
1,697,456 - Ga0059261_1619 0.75 -0.8
1,697,456 - Ga0059261_1619 0.75 +0.2
1,697,456 - Ga0059261_1619 0.75 +2.4
1,697,456 - Ga0059261_1619 0.75 -0.4
1,697,511 + -1.2
1,697,511 + Ga0059261_1619 0.80 -0.1
1,697,511 + Ga0059261_1619 0.80 +0.2
1,697,512 - Ga0059261_1619 0.80 +0.2
1,697,564 + +0.4
1,697,564 + Ga0059261_1619 0.85 +0.4
1,697,564 + Ga0059261_1619 0.85 +0.2
1,697,564 + Ga0059261_1619 0.85 -1.1
1,697,565 - Ga0059261_1619 0.85 +0.2
1,697,565 - Ga0059261_1619 0.85 +0.8
1,697,565 - Ga0059261_1619 0.85 -1.0
1,697,565 - Ga0059261_1619 0.85 +0.4
1,697,565 - Ga0059261_1619 0.85 +1.1
1,697,565 - Ga0059261_1619 0.85 +0.4
1,697,596 + Ga0059261_1619 0.88 +0.2
1,697,596 + Ga0059261_1619 0.88 +0.8
1,697,596 + Ga0059261_1619 0.88 +0.6
1,697,596 + Ga0059261_1619 0.88 +0.1
1,697,596 + Ga0059261_1619 0.88 +0.1
1,697,596 + Ga0059261_1619 0.88 -0.2
1,697,596 + Ga0059261_1619 0.88 +1.4
1,697,596 + Ga0059261_1619 0.88 +1.0
1,697,596 + Ga0059261_1619 0.88 -1.0
1,697,596 + Ga0059261_1619 0.88 -1.2
1,697,597 - Ga0059261_1619 0.88 +0.2
1,697,597 - Ga0059261_1619 0.88 -0.4
1,697,597 - Ga0059261_1619 0.88 -0.5
1,697,597 - Ga0059261_1619 0.88 +0.4
1,697,597 - Ga0059261_1619 0.88 +1.2
1,697,597 - Ga0059261_1619 0.88 +0.8
1,697,597 - Ga0059261_1619 0.88 -0.8
1,697,597 - Ga0059261_1619 0.88 +0.2
1,697,597 - Ga0059261_1619 0.88 +0.8
1,697,720 - +0.0
1,697,720 - +0.5
1,697,720 - -1.2
1,697,720 - -0.2
1,697,752 - +1.3
1,697,796 - +0.5
1,697,796 - +0.6
1,697,796 - +0.3
1,697,999 - Ga0059261_1620 0.34 +0.0
1,698,046 + Ga0059261_1620 0.41 -0.8
1,698,047 - Ga0059261_1620 0.41 +0.8
1,698,072 + Ga0059261_1620 0.45 +0.1
1,698,072 + Ga0059261_1620 0.45 -0.5
1,698,072 + Ga0059261_1620 0.45 +0.3
1,698,072 + Ga0059261_1620 0.45 +0.1
1,698,072 + Ga0059261_1620 0.45 -0.0
1,698,073 - Ga0059261_1620 0.45 +0.8
1,698,073 - Ga0059261_1620 0.45 +0.2
1,698,073 - Ga0059261_1620 0.45 -0.0
1,698,073 - Ga0059261_1620 0.45 -0.6
1,698,082 + Ga0059261_1620 0.47 -0.7
1,698,082 + Ga0059261_1620 0.47 +0.3
1,698,083 - Ga0059261_1620 0.47 +0.9
1,698,083 - Ga0059261_1620 0.47 +0.2
1,698,140 + Ga0059261_1620 0.55 -0.1
1,698,140 + Ga0059261_1620 0.55 +0.5
1,698,140 + Ga0059261_1620 0.55 -0.1
1,698,140 + Ga0059261_1620 0.55 -0.1
1,698,140 + Ga0059261_1620 0.55 +1.3
1,698,141 - Ga0059261_1620 0.55 +0.4
1,698,141 - Ga0059261_1620 0.55 -0.3
1,698,141 - Ga0059261_1620 0.55 -0.2
1,698,141 - Ga0059261_1620 0.55 +0.1
1,698,141 - Ga0059261_1620 0.55 +0.3
1,698,275 + Ga0059261_1620 0.75 -0.1
1,698,275 + Ga0059261_1620 0.75 +1.1
1,698,275 + Ga0059261_1620 0.75 +0.0
1,698,275 + Ga0059261_1620 0.75 +0.2
1,698,276 - Ga0059261_1620 0.75 +1.5
1,698,276 - Ga0059261_1620 0.75 +0.1
1,698,276 - Ga0059261_1620 0.75 -0.2
1,698,276 - Ga0059261_1620 0.75 +0.2
1,698,276 - Ga0059261_1620 0.75 +0.1
1,698,383 + -1.2
1,698,383 + +0.5
1,698,422 + -0.8
1,698,422 + +0.7
1,698,423 - +0.4
1,698,423 - +0.0
1,698,463 + +0.0
1,698,583 + Ga0059261_1621 0.13 +0.9
1,698,584 - Ga0059261_1621 0.13 -0.1
1,698,595 + Ga0059261_1621 0.14 +0.3
1,698,595 + Ga0059261_1621 0.14 -0.8
1,698,595 + Ga0059261_1621 0.14 +0.0
1,698,595 + Ga0059261_1621 0.14 +0.1
1,698,659 + Ga0059261_1621 0.21 +0.1
1,698,660 - Ga0059261_1621 0.21 +0.3
1,698,660 - Ga0059261_1621 0.21 +0.3
1,698,666 + Ga0059261_1621 0.22 +0.2
1,698,666 + Ga0059261_1621 0.22 -1.4
1,698,667 - Ga0059261_1621 0.22 +1.6
1,699,045 + Ga0059261_1621 0.63 -0.1
1,699,066 + Ga0059261_1621 0.65 -1.2
1,699,066 + Ga0059261_1621 0.65 +0.5
1,699,066 + Ga0059261_1621 0.65 +0.3
1,699,066 + Ga0059261_1621 0.65 -0.2
1,699,067 - Ga0059261_1621 0.65 -0.6
1,699,067 - Ga0059261_1621 0.65 -0.1
1,699,067 - Ga0059261_1621 0.65 +0.2
1,699,067 - Ga0059261_1621 0.65 -0.2
1,699,067 - Ga0059261_1621 0.65 -0.1
1,699,067 - Ga0059261_1621 0.65 +1.9
1,699,238 + Ga0059261_1621 0.84 -0.6
1,699,238 + Ga0059261_1621 0.84 -0.1
1,699,239 - Ga0059261_1621 0.84 +0.1
1,699,239 - Ga0059261_1621 0.84 +0.2
1,699,405 + -0.5
1,699,406 - -0.2

Or see this region's nucleotide sequence