Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0812

Experiment: L-Lysine 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0810 and Ga0059261_0811 overlap by 8 nucleotidesGa0059261_0811 and Ga0059261_0812 are separated by 70 nucleotidesGa0059261_0812 and Ga0059261_0813 are separated by 16 nucleotidesGa0059261_0813 and Ga0059261_0814 overlap by 1 nucleotides Ga0059261_0810: Ga0059261_0810 - Predicted Zn-dependent proteases and their inactivated homologs, at 852,457 to 853,803 _0810 Ga0059261_0811: Ga0059261_0811 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 853,796 to 854,584 _0811 Ga0059261_0812: Ga0059261_0812 - Short-chain alcohol dehydrogenase of unknown specificity, at 854,655 to 855,416 _0812 Ga0059261_0813: Ga0059261_0813 - hypothetical protein, at 855,433 to 855,915 _0813 Ga0059261_0814: Ga0059261_0814 - hypothetical protein, at 855,915 to 856,631 _0814 Position (kb) 854 855 856Strain fitness (log2 ratio) -2 -1 0 1 2at 854.206 kb on + strand, within Ga0059261_0811at 854.206 kb on + strand, within Ga0059261_0811at 854.207 kb on - strand, within Ga0059261_0811at 854.215 kb on + strand, within Ga0059261_0811at 854.438 kb on - strand, within Ga0059261_0811at 854.850 kb on + strand, within Ga0059261_0812at 854.851 kb on - strand, within Ga0059261_0812at 854.851 kb on - strand, within Ga0059261_0812at 854.851 kb on - strand, within Ga0059261_0812at 855.006 kb on + strand, within Ga0059261_0812at 855.014 kb on + strand, within Ga0059261_0812at 855.015 kb on - strand, within Ga0059261_0812at 855.114 kb on + strand, within Ga0059261_0812at 855.114 kb on + strand, within Ga0059261_0812at 855.434 kb on + strandat 855.435 kb on - strandat 855.520 kb on - strand, within Ga0059261_0813at 855.520 kb on - strand, within Ga0059261_0813at 855.520 kb on - strand, within Ga0059261_0813at 855.552 kb on + strandat 855.552 kb on + strand, within Ga0059261_0813at 855.552 kb on + strand, within Ga0059261_0813at 855.552 kb on + strand, within Ga0059261_0813at 855.552 kb on + strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.553 kb on - strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.554 kb on + strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strandat 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.555 kb on - strand, within Ga0059261_0813at 855.584 kb on + strand, within Ga0059261_0813at 855.585 kb on - strand, within Ga0059261_0813at 855.585 kb on - strand, within Ga0059261_0813at 855.713 kb on + strand, within Ga0059261_0813at 855.713 kb on + strand, within Ga0059261_0813at 855.714 kb on - strand, within Ga0059261_0813at 855.714 kb on - strandat 855.729 kb on + strand, within Ga0059261_0813at 855.730 kb on - strand, within Ga0059261_0813at 855.764 kb on + strand, within Ga0059261_0813at 855.764 kb on + strand, within Ga0059261_0813at 855.764 kb on + strand, within Ga0059261_0813at 855.765 kb on - strand, within Ga0059261_0813at 855.842 kb on + strand, within Ga0059261_0813at 855.842 kb on + strandat 855.946 kb on + strandat 855.946 kb on + strandat 855.947 kb on - strandat 855.947 kb on - strandat 855.947 kb on - strandat 855.947 kb on - strandat 855.961 kb on + strandat 856.017 kb on - strand, within Ga0059261_0814at 856.121 kb on - strand, within Ga0059261_0814at 856.413 kb on + strand, within Ga0059261_0814at 856.413 kb on + strand, within Ga0059261_0814at 856.413 kb on + strand, within Ga0059261_0814at 856.414 kb on - strand, within Ga0059261_0814at 856.414 kb on - strand, within Ga0059261_0814

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 25 mM
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854,206 + Ga0059261_0811 0.52 +1.0
854,206 + Ga0059261_0811 0.52 +0.1
854,207 - Ga0059261_0811 0.52 +0.4
854,215 + Ga0059261_0811 0.53 -0.3
854,438 - Ga0059261_0811 0.81 +0.1
854,850 + Ga0059261_0812 0.26 +0.5
854,851 - Ga0059261_0812 0.26 -0.3
854,851 - Ga0059261_0812 0.26 -1.4
854,851 - Ga0059261_0812 0.26 +0.0
855,006 + Ga0059261_0812 0.46 +0.6
855,014 + Ga0059261_0812 0.47 +1.5
855,015 - Ga0059261_0812 0.47 +0.4
855,114 + Ga0059261_0812 0.60 +0.3
855,114 + Ga0059261_0812 0.60 -1.5
855,434 + -0.2
855,435 - +0.1
855,520 - Ga0059261_0813 0.18 -0.6
855,520 - Ga0059261_0813 0.18 -0.0
855,520 - Ga0059261_0813 0.18 -0.3
855,552 + -0.2
855,552 + Ga0059261_0813 0.25 -0.4
855,552 + Ga0059261_0813 0.25 +0.2
855,552 + Ga0059261_0813 0.25 +0.4
855,552 + Ga0059261_0813 0.25 +0.8
855,553 - Ga0059261_0813 0.25 -0.2
855,553 - Ga0059261_0813 0.25 -0.2
855,553 - Ga0059261_0813 0.25 -0.4
855,553 - Ga0059261_0813 0.25 -0.2
855,553 - Ga0059261_0813 0.25 +0.4
855,553 - Ga0059261_0813 0.25 +0.4
855,553 - Ga0059261_0813 0.25 +0.6
855,553 - Ga0059261_0813 0.25 +0.5
855,553 - Ga0059261_0813 0.25 +0.1
855,553 - Ga0059261_0813 0.25 -0.0
855,554 + Ga0059261_0813 0.25 -1.1
855,554 + Ga0059261_0813 0.25 +0.1
855,554 + Ga0059261_0813 0.25 -0.1
855,554 + Ga0059261_0813 0.25 -0.2
855,554 + Ga0059261_0813 0.25 +0.0
855,554 + Ga0059261_0813 0.25 -0.1
855,554 + Ga0059261_0813 0.25 +2.2
855,554 + Ga0059261_0813 0.25 +0.1
855,554 + Ga0059261_0813 0.25 +0.1
855,554 + Ga0059261_0813 0.25 +0.0
855,554 + Ga0059261_0813 0.25 +0.2
855,555 - Ga0059261_0813 0.25 +2.2
855,555 - Ga0059261_0813 0.25 +0.7
855,555 - Ga0059261_0813 0.25 -0.4
855,555 - Ga0059261_0813 0.25 +0.5
855,555 - Ga0059261_0813 0.25 -0.2
855,555 - Ga0059261_0813 0.25 -0.9
855,555 - -0.2
855,555 - Ga0059261_0813 0.25 +0.0
855,555 - Ga0059261_0813 0.25 +0.2
855,555 - Ga0059261_0813 0.25 +0.2
855,584 + Ga0059261_0813 0.31 -1.2
855,585 - Ga0059261_0813 0.31 -0.2
855,585 - Ga0059261_0813 0.31 -1.0
855,713 + Ga0059261_0813 0.58 +0.5
855,713 + Ga0059261_0813 0.58 +0.3
855,714 - Ga0059261_0813 0.58 +0.1
855,714 - +0.8
855,729 + Ga0059261_0813 0.61 -0.0
855,730 - Ga0059261_0813 0.61 -0.3
855,764 + Ga0059261_0813 0.69 +0.8
855,764 + Ga0059261_0813 0.69 -0.8
855,764 + Ga0059261_0813 0.69 -0.6
855,765 - Ga0059261_0813 0.69 +0.7
855,842 + Ga0059261_0813 0.85 -0.4
855,842 + -1.8
855,946 + +0.1
855,946 + -0.6
855,947 - -0.4
855,947 - -0.4
855,947 - +0.2
855,947 - +0.2
855,961 + +0.1
856,017 - Ga0059261_0814 0.14 -0.3
856,121 - Ga0059261_0814 0.29 -1.8
856,413 + Ga0059261_0814 0.69 +0.2
856,413 + Ga0059261_0814 0.69 -0.5
856,413 + Ga0059261_0814 0.69 -0.8
856,414 - Ga0059261_0814 0.70 -1.3
856,414 - Ga0059261_0814 0.70 -0.0

Or see this region's nucleotide sequence