Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0600

Experiment: L-Lysine 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0598 and Ga0059261_0599 are separated by 14 nucleotidesGa0059261_0599 and Ga0059261_0600 overlap by 16 nucleotidesGa0059261_0600 and Ga0059261_0601 overlap by 43 nucleotidesGa0059261_0601 and Ga0059261_0602 overlap by 1 nucleotides Ga0059261_0598: Ga0059261_0598 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 631,418 to 633,082 _0598 Ga0059261_0599: Ga0059261_0599 - glucose-1-phosphate cytidylyltransferase, at 633,097 to 633,870 _0599 Ga0059261_0600: Ga0059261_0600 - CDP-glucose 4,6-dehydratase, at 633,855 to 634,940 _0600 Ga0059261_0601: Ga0059261_0601 - Methyltransferase domain, at 634,898 to 635,848 _0601 Ga0059261_0602: Ga0059261_0602 - Predicted membrane protein, at 635,848 to 636,249 _0602 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2at 632.975 kb on - strandat 633.107 kb on + strandat 633.107 kb on + strandat 633.107 kb on + strandat 633.246 kb on + strand, within Ga0059261_0599at 633.247 kb on - strand, within Ga0059261_0599at 633.259 kb on + strand, within Ga0059261_0599at 633.259 kb on + strand, within Ga0059261_0599at 633.261 kb on + strand, within Ga0059261_0599at 633.261 kb on + strand, within Ga0059261_0599at 633.261 kb on + strand, within Ga0059261_0599at 633.262 kb on - strand, within Ga0059261_0599at 633.262 kb on - strand, within Ga0059261_0599at 633.268 kb on + strand, within Ga0059261_0599at 633.269 kb on - strand, within Ga0059261_0599at 633.295 kb on + strand, within Ga0059261_0599at 633.295 kb on + strand, within Ga0059261_0599at 633.295 kb on + strand, within Ga0059261_0599at 633.295 kb on + strand, within Ga0059261_0599at 633.295 kb on + strand, within Ga0059261_0599at 633.296 kb on - strand, within Ga0059261_0599at 633.296 kb on - strand, within Ga0059261_0599at 633.296 kb on - strand, within Ga0059261_0599at 633.296 kb on - strand, within Ga0059261_0599at 633.445 kb on + strand, within Ga0059261_0599at 633.445 kb on + strand, within Ga0059261_0599at 633.446 kb on - strand, within Ga0059261_0599at 633.446 kb on - strand, within Ga0059261_0599at 633.446 kb on - strand, within Ga0059261_0599at 633.446 kb on - strand, within Ga0059261_0599at 633.446 kb on - strand, within Ga0059261_0599at 633.478 kb on + strand, within Ga0059261_0599at 633.479 kb on - strand, within Ga0059261_0599at 633.479 kb on - strand, within Ga0059261_0599at 633.820 kb on + strandat 633.820 kb on + strandat 633.820 kb on + strandat 633.821 kb on - strandat 633.821 kb on - strandat 634.146 kb on + strand, within Ga0059261_0600at 634.146 kb on + strandat 634.146 kb on + strand, within Ga0059261_0600at 634.147 kb on - strand, within Ga0059261_0600at 634.147 kb on - strand, within Ga0059261_0600at 634.147 kb on - strand, within Ga0059261_0600at 634.167 kb on + strand, within Ga0059261_0600at 634.167 kb on + strand, within Ga0059261_0600at 634.168 kb on - strand, within Ga0059261_0600at 634.168 kb on - strand, within Ga0059261_0600at 634.263 kb on + strand, within Ga0059261_0600at 634.263 kb on + strand, within Ga0059261_0600at 634.268 kb on + strand, within Ga0059261_0600at 634.291 kb on - strand, within Ga0059261_0600at 634.327 kb on - strand, within Ga0059261_0600at 634.424 kb on + strand, within Ga0059261_0600at 634.425 kb on - strand, within Ga0059261_0600at 634.425 kb on - strand, within Ga0059261_0600at 634.566 kb on + strand, within Ga0059261_0600at 634.566 kb on + strand, within Ga0059261_0600at 634.567 kb on - strand, within Ga0059261_0600at 634.900 kb on - strandat 635.129 kb on + strand, within Ga0059261_0601at 635.129 kb on + strand, within Ga0059261_0601at 635.130 kb on - strand, within Ga0059261_0601at 635.145 kb on + strand, within Ga0059261_0601at 635.145 kb on + strand, within Ga0059261_0601at 635.145 kb on + strand, within Ga0059261_0601at 635.517 kb on + strand, within Ga0059261_0601at 635.518 kb on - strand, within Ga0059261_0601at 635.518 kb on - strand, within Ga0059261_0601at 635.560 kb on - strand, within Ga0059261_0601at 635.560 kb on - strand, within Ga0059261_0601at 635.625 kb on + strand, within Ga0059261_0601at 635.625 kb on + strand, within Ga0059261_0601at 635.625 kb on + strand, within Ga0059261_0601at 635.626 kb on - strand, within Ga0059261_0601at 635.626 kb on - strand, within Ga0059261_0601at 635.626 kb on - strand, within Ga0059261_0601at 635.626 kb on - strand, within Ga0059261_0601at 635.626 kb on - strand, within Ga0059261_0601at 635.667 kb on + strand, within Ga0059261_0601at 635.667 kb on + strand, within Ga0059261_0601at 635.667 kb on + strand, within Ga0059261_0601at 635.668 kb on - strand, within Ga0059261_0601at 635.668 kb on - strand, within Ga0059261_0601at 635.668 kb on - strand, within Ga0059261_0601at 635.668 kb on - strand, within Ga0059261_0601at 635.697 kb on + strand, within Ga0059261_0601at 635.697 kb on + strand, within Ga0059261_0601at 635.697 kb on + strand, within Ga0059261_0601at 635.698 kb on - strand, within Ga0059261_0601at 635.838 kb on + strandat 635.838 kb on + strandat 635.839 kb on - strandat 635.839 kb on - strandat 635.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 25 mM
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632,975 - +0.3
633,107 + -0.6
633,107 + -1.0
633,107 + -1.9
633,246 + Ga0059261_0599 0.19 +1.6
633,247 - Ga0059261_0599 0.19 +0.7
633,259 + Ga0059261_0599 0.21 -0.5
633,259 + Ga0059261_0599 0.21 +0.0
633,261 + Ga0059261_0599 0.21 -0.1
633,261 + Ga0059261_0599 0.21 -0.6
633,261 + Ga0059261_0599 0.21 +0.0
633,262 - Ga0059261_0599 0.21 +0.2
633,262 - Ga0059261_0599 0.21 -1.5
633,268 + Ga0059261_0599 0.22 -0.4
633,269 - Ga0059261_0599 0.22 +0.2
633,295 + Ga0059261_0599 0.26 +1.3
633,295 + Ga0059261_0599 0.26 -0.5
633,295 + Ga0059261_0599 0.26 -0.5
633,295 + Ga0059261_0599 0.26 +0.4
633,295 + Ga0059261_0599 0.26 -0.7
633,296 - Ga0059261_0599 0.26 -0.8
633,296 - Ga0059261_0599 0.26 -1.3
633,296 - Ga0059261_0599 0.26 -0.8
633,296 - Ga0059261_0599 0.26 -0.8
633,445 + Ga0059261_0599 0.45 -0.5
633,445 + Ga0059261_0599 0.45 +1.6
633,446 - Ga0059261_0599 0.45 +0.2
633,446 - Ga0059261_0599 0.45 +0.2
633,446 - Ga0059261_0599 0.45 -0.5
633,446 - Ga0059261_0599 0.45 -0.2
633,446 - Ga0059261_0599 0.45 +2.2
633,478 + Ga0059261_0599 0.49 +0.1
633,479 - Ga0059261_0599 0.49 +0.2
633,479 - Ga0059261_0599 0.49 +0.1
633,820 + -0.8
633,820 + -1.0
633,820 + -0.1
633,821 - -1.3
633,821 - -0.6
634,146 + Ga0059261_0600 0.27 +0.3
634,146 + -0.2
634,146 + Ga0059261_0600 0.27 -0.8
634,147 - Ga0059261_0600 0.27 +0.2
634,147 - Ga0059261_0600 0.27 -0.2
634,147 - Ga0059261_0600 0.27 -0.2
634,167 + Ga0059261_0600 0.29 +0.1
634,167 + Ga0059261_0600 0.29 +0.0
634,168 - Ga0059261_0600 0.29 +0.4
634,168 - Ga0059261_0600 0.29 +1.4
634,263 + Ga0059261_0600 0.38 +0.0
634,263 + Ga0059261_0600 0.38 +0.3
634,268 + Ga0059261_0600 0.38 +0.0
634,291 - Ga0059261_0600 0.40 +0.1
634,327 - Ga0059261_0600 0.43 +0.6
634,424 + Ga0059261_0600 0.52 +0.1
634,425 - Ga0059261_0600 0.52 +0.0
634,425 - Ga0059261_0600 0.52 +1.2
634,566 + Ga0059261_0600 0.65 +0.8
634,566 + Ga0059261_0600 0.65 +0.0
634,567 - Ga0059261_0600 0.66 +0.6
634,900 - -1.9
635,129 + Ga0059261_0601 0.24 +0.0
635,129 + Ga0059261_0601 0.24 -0.3
635,130 - Ga0059261_0601 0.24 +0.2
635,145 + Ga0059261_0601 0.26 -0.4
635,145 + Ga0059261_0601 0.26 -0.0
635,145 + Ga0059261_0601 0.26 -0.2
635,517 + Ga0059261_0601 0.65 +0.1
635,518 - Ga0059261_0601 0.65 -0.0
635,518 - Ga0059261_0601 0.65 +0.8
635,560 - Ga0059261_0601 0.70 -0.3
635,560 - Ga0059261_0601 0.70 -0.1
635,625 + Ga0059261_0601 0.76 -0.0
635,625 + Ga0059261_0601 0.76 +0.4
635,625 + Ga0059261_0601 0.76 -1.2
635,626 - Ga0059261_0601 0.77 +0.1
635,626 - Ga0059261_0601 0.77 -0.8
635,626 - Ga0059261_0601 0.77 +0.5
635,626 - Ga0059261_0601 0.77 +1.2
635,626 - Ga0059261_0601 0.77 -0.1
635,667 + Ga0059261_0601 0.81 -0.4
635,667 + Ga0059261_0601 0.81 +0.1
635,667 + Ga0059261_0601 0.81 +0.6
635,668 - Ga0059261_0601 0.81 -0.1
635,668 - Ga0059261_0601 0.81 +0.8
635,668 - Ga0059261_0601 0.81 +1.4
635,668 - Ga0059261_0601 0.81 -0.2
635,697 + Ga0059261_0601 0.84 +1.6
635,697 + Ga0059261_0601 0.84 -0.4
635,697 + Ga0059261_0601 0.84 +0.3
635,698 - Ga0059261_0601 0.84 -0.2
635,838 + -0.1
635,838 + +0.2
635,839 - -0.8
635,839 - -0.4
635,839 - +1.2

Or see this region's nucleotide sequence