Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0270

Experiment: L-Lysine 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0269 and Ga0059261_0270 are separated by 3 nucleotidesGa0059261_0270 and Ga0059261_0271 are separated by 85 nucleotidesGa0059261_0271 and Ga0059261_0272 are separated by 150 nucleotidesGa0059261_0272 and Ga0059261_0273 are separated by 105 nucleotides Ga0059261_0269: Ga0059261_0269 - Dioxygenases related to 2-nitropropane dioxygenase, at 257,110 to 258,093 _0269 Ga0059261_0270: Ga0059261_0270 - Uncharacterized protein conserved in bacteria, at 258,097 to 258,561 _0270 Ga0059261_0271: Ga0059261_0271 - Uncharacterized conserved small protein containing a coiled-coil domain, at 258,647 to 258,844 _0271 Ga0059261_0272: Ga0059261_0272 - Uncharacterized small protein, at 258,995 to 259,150 _0272 Ga0059261_0273: Ga0059261_0273 - PilZ domain, at 259,256 to 259,657 _0273 Position (kb) 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 257.110 kb on - strandat 257.110 kb on - strandat 257.110 kb on - strandat 257.466 kb on - strand, within Ga0059261_0269at 257.712 kb on + strand, within Ga0059261_0269at 257.713 kb on + strand, within Ga0059261_0269at 257.713 kb on + strand, within Ga0059261_0269at 257.713 kb on + strand, within Ga0059261_0269at 257.713 kb on + strand, within Ga0059261_0269at 257.714 kb on - strand, within Ga0059261_0269at 257.714 kb on - strandat 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.764 kb on + strand, within Ga0059261_0269at 257.765 kb on - strand, within Ga0059261_0269at 257.765 kb on - strand, within Ga0059261_0269at 257.765 kb on - strand, within Ga0059261_0269at 257.807 kb on - strand, within Ga0059261_0269at 257.807 kb on - strand, within Ga0059261_0269at 257.807 kb on - strand, within Ga0059261_0269at 257.807 kb on - strand, within Ga0059261_0269at 257.807 kb on - strand, within Ga0059261_0269at 257.839 kb on + strand, within Ga0059261_0269at 257.839 kb on + strand, within Ga0059261_0269at 257.839 kb on + strand, within Ga0059261_0269at 257.839 kb on + strand, within Ga0059261_0269at 257.840 kb on - strand, within Ga0059261_0269at 257.840 kb on - strand, within Ga0059261_0269at 257.840 kb on - strand, within Ga0059261_0269at 258.037 kb on + strandat 258.037 kb on + strandat 258.037 kb on + strandat 258.068 kb on + strandat 258.069 kb on - strandat 258.069 kb on - strandat 258.069 kb on - strandat 258.069 kb on - strandat 258.098 kb on + strandat 258.098 kb on + strandat 258.098 kb on + strandat 258.198 kb on - strand, within Ga0059261_0270at 258.348 kb on + strand, within Ga0059261_0270at 258.348 kb on + strand, within Ga0059261_0270at 258.348 kb on + strand, within Ga0059261_0270at 258.467 kb on + strand, within Ga0059261_0270at 258.468 kb on - strand, within Ga0059261_0270at 258.468 kb on - strand, within Ga0059261_0270at 258.504 kb on + strand, within Ga0059261_0270at 258.505 kb on - strand, within Ga0059261_0270at 258.506 kb on + strand, within Ga0059261_0270at 258.506 kb on + strand, within Ga0059261_0270at 258.506 kb on + strand, within Ga0059261_0270at 258.506 kb on + strandat 258.506 kb on + strand, within Ga0059261_0270at 258.506 kb on + strand, within Ga0059261_0270at 258.507 kb on - strand, within Ga0059261_0270at 258.507 kb on - strand, within Ga0059261_0270at 258.507 kb on - strand, within Ga0059261_0270at 258.507 kb on - strand, within Ga0059261_0270at 258.507 kb on - strandat 258.507 kb on - strand, within Ga0059261_0270at 258.507 kb on - strand, within Ga0059261_0270at 258.507 kb on - strand, within Ga0059261_0270at 258.507 kb on - strand, within Ga0059261_0270at 258.586 kb on + strandat 258.586 kb on + strandat 258.587 kb on - strandat 258.587 kb on - strandat 258.600 kb on - strandat 258.600 kb on - strandat 258.835 kb on + strandat 258.836 kb on - strandat 258.850 kb on + strandat 258.851 kb on - strandat 258.851 kb on - strandat 258.851 kb on - strandat 258.952 kb on + strandat 258.952 kb on + strandat 258.952 kb on + strandat 258.952 kb on + strandat 258.953 kb on - strandat 258.953 kb on - strandat 258.953 kb on - strandat 258.953 kb on - strandat 258.959 kb on + strandat 258.960 kb on - strandat 258.960 kb on - strandat 258.960 kb on - strandat 259.021 kb on + strand, within Ga0059261_0272at 259.021 kb on + strand, within Ga0059261_0272at 259.022 kb on - strand, within Ga0059261_0272at 259.023 kb on - strand, within Ga0059261_0272at 259.095 kb on + strand, within Ga0059261_0272at 259.095 kb on + strand, within Ga0059261_0272at 259.096 kb on - strand, within Ga0059261_0272at 259.096 kb on - strand, within Ga0059261_0272at 259.096 kb on - strand, within Ga0059261_0272at 259.196 kb on + strandat 259.196 kb on + strandat 259.196 kb on + strandat 259.196 kb on + strandat 259.197 kb on - strandat 259.197 kb on - strandat 259.197 kb on - strandat 259.197 kb on - strandat 259.197 kb on - strandat 259.251 kb on + strandat 259.251 kb on + strandat 259.252 kb on - strandat 259.252 kb on - strandat 259.252 kb on - strandat 259.252 kb on - strandat 259.252 kb on - strandat 259.311 kb on + strand, within Ga0059261_0273at 259.312 kb on - strand, within Ga0059261_0273at 259.321 kb on + strand, within Ga0059261_0273at 259.322 kb on - strandat 259.322 kb on - strand, within Ga0059261_0273at 259.362 kb on + strand, within Ga0059261_0273at 259.362 kb on + strand, within Ga0059261_0273at 259.362 kb on + strand, within Ga0059261_0273at 259.362 kb on + strand, within Ga0059261_0273at 259.363 kb on - strand, within Ga0059261_0273at 259.363 kb on - strand, within Ga0059261_0273at 259.363 kb on - strand, within Ga0059261_0273at 259.442 kb on + strand, within Ga0059261_0273at 259.442 kb on + strandat 259.442 kb on + strand, within Ga0059261_0273at 259.443 kb on - strand, within Ga0059261_0273at 259.443 kb on - strand, within Ga0059261_0273at 259.443 kb on - strand, within Ga0059261_0273at 259.468 kb on + strand, within Ga0059261_0273at 259.469 kb on - strand, within Ga0059261_0273at 259.472 kb on + strand, within Ga0059261_0273at 259.472 kb on + strand, within Ga0059261_0273at 259.472 kb on + strand, within Ga0059261_0273at 259.473 kb on - strand, within Ga0059261_0273at 259.473 kb on - strand, within Ga0059261_0273at 259.485 kb on + strand, within Ga0059261_0273at 259.486 kb on - strand, within Ga0059261_0273at 259.486 kb on - strand, within Ga0059261_0273at 259.486 kb on - strand, within Ga0059261_0273at 259.486 kb on - strand, within Ga0059261_0273

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 25 mM
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257,110 - +1.3
257,110 - -0.2
257,110 - -0.3
257,466 - Ga0059261_0269 0.36 +0.5
257,712 + Ga0059261_0269 0.61 +0.2
257,713 + Ga0059261_0269 0.61 +0.2
257,713 + Ga0059261_0269 0.61 -0.3
257,713 + Ga0059261_0269 0.61 +0.0
257,713 + Ga0059261_0269 0.61 +0.8
257,714 - Ga0059261_0269 0.61 +1.0
257,714 - +0.2
257,764 + Ga0059261_0269 0.66 -0.3
257,764 + Ga0059261_0269 0.66 +0.2
257,764 + Ga0059261_0269 0.66 -0.8
257,764 + Ga0059261_0269 0.66 -0.2
257,764 + Ga0059261_0269 0.66 -0.7
257,764 + Ga0059261_0269 0.66 -1.5
257,764 + Ga0059261_0269 0.66 +0.8
257,764 + Ga0059261_0269 0.66 +0.6
257,764 + Ga0059261_0269 0.66 +1.1
257,764 + Ga0059261_0269 0.66 -1.0
257,765 - Ga0059261_0269 0.67 +0.5
257,765 - Ga0059261_0269 0.67 -1.4
257,765 - Ga0059261_0269 0.67 +0.2
257,807 - Ga0059261_0269 0.71 +0.5
257,807 - Ga0059261_0269 0.71 +0.6
257,807 - Ga0059261_0269 0.71 +0.1
257,807 - Ga0059261_0269 0.71 -0.1
257,807 - Ga0059261_0269 0.71 +0.0
257,839 + Ga0059261_0269 0.74 +0.5
257,839 + Ga0059261_0269 0.74 -0.5
257,839 + Ga0059261_0269 0.74 +0.3
257,839 + Ga0059261_0269 0.74 +0.1
257,840 - Ga0059261_0269 0.74 +0.6
257,840 - Ga0059261_0269 0.74 +0.3
257,840 - Ga0059261_0269 0.74 -0.2
258,037 + +0.1
258,037 + -0.1
258,037 + +0.8
258,068 + -0.2
258,069 - -0.3
258,069 - +1.6
258,069 - +0.1
258,069 - +0.1
258,098 + +1.1
258,098 + -0.9
258,098 + -0.3
258,198 - Ga0059261_0270 0.22 +1.4
258,348 + Ga0059261_0270 0.54 -0.6
258,348 + Ga0059261_0270 0.54 +0.8
258,348 + Ga0059261_0270 0.54 +1.2
258,467 + Ga0059261_0270 0.80 +0.8
258,468 - Ga0059261_0270 0.80 -0.1
258,468 - Ga0059261_0270 0.80 +0.1
258,504 + Ga0059261_0270 0.88 +0.6
258,505 - Ga0059261_0270 0.88 +1.2
258,506 + Ga0059261_0270 0.88 +0.6
258,506 + Ga0059261_0270 0.88 -0.8
258,506 + Ga0059261_0270 0.88 +0.6
258,506 + -2.3
258,506 + Ga0059261_0270 0.88 -1.0
258,506 + Ga0059261_0270 0.88 +0.3
258,507 - Ga0059261_0270 0.88 -0.2
258,507 - Ga0059261_0270 0.88 +0.4
258,507 - Ga0059261_0270 0.88 +1.1
258,507 - Ga0059261_0270 0.88 +1.8
258,507 - -0.8
258,507 - Ga0059261_0270 0.88 +1.2
258,507 - Ga0059261_0270 0.88 -1.1
258,507 - Ga0059261_0270 0.88 -0.3
258,507 - Ga0059261_0270 0.88 -0.3
258,586 + -0.1
258,586 + +0.1
258,587 - -0.2
258,587 - +0.3
258,600 - -0.2
258,600 - +0.4
258,835 + -0.1
258,836 - +0.4
258,850 + -0.4
258,851 - -0.5
258,851 - -0.9
258,851 - -0.3
258,952 + +0.3
258,952 + -0.3
258,952 + +1.7
258,952 + +0.1
258,953 - -0.0
258,953 - +0.0
258,953 - -0.5
258,953 - -0.3
258,959 + +0.0
258,960 - -0.6
258,960 - -0.4
258,960 - -1.0
259,021 + Ga0059261_0272 0.17 -0.0
259,021 + Ga0059261_0272 0.17 +1.3
259,022 - Ga0059261_0272 0.17 -0.4
259,023 - Ga0059261_0272 0.18 +0.8
259,095 + Ga0059261_0272 0.64 +0.8
259,095 + Ga0059261_0272 0.64 -0.3
259,096 - Ga0059261_0272 0.65 +1.4
259,096 - Ga0059261_0272 0.65 +0.4
259,096 - Ga0059261_0272 0.65 -1.3
259,196 + -0.5
259,196 + +0.2
259,196 + +0.6
259,196 + +0.3
259,197 - +0.2
259,197 - -0.5
259,197 - -1.2
259,197 - +0.0
259,197 - -0.4
259,251 + -1.0
259,251 + +0.4
259,252 - +1.3
259,252 - -0.5
259,252 - +0.2
259,252 - +0.1
259,252 - -0.8
259,311 + Ga0059261_0273 0.14 -0.1
259,312 - Ga0059261_0273 0.14 +0.2
259,321 + Ga0059261_0273 0.16 -1.5
259,322 - +0.8
259,322 - Ga0059261_0273 0.16 -0.8
259,362 + Ga0059261_0273 0.26 -0.2
259,362 + Ga0059261_0273 0.26 -0.7
259,362 + Ga0059261_0273 0.26 -0.1
259,362 + Ga0059261_0273 0.26 -0.8
259,363 - Ga0059261_0273 0.27 -0.3
259,363 - Ga0059261_0273 0.27 +0.1
259,363 - Ga0059261_0273 0.27 -0.0
259,442 + Ga0059261_0273 0.46 +0.6
259,442 + -0.2
259,442 + Ga0059261_0273 0.46 +1.4
259,443 - Ga0059261_0273 0.47 -0.3
259,443 - Ga0059261_0273 0.47 -0.5
259,443 - Ga0059261_0273 0.47 +0.1
259,468 + Ga0059261_0273 0.53 +1.2
259,469 - Ga0059261_0273 0.53 +0.3
259,472 + Ga0059261_0273 0.54 -0.6
259,472 + Ga0059261_0273 0.54 -0.6
259,472 + Ga0059261_0273 0.54 -1.3
259,473 - Ga0059261_0273 0.54 +1.5
259,473 - Ga0059261_0273 0.54 +0.8
259,485 + Ga0059261_0273 0.57 +0.5
259,486 - Ga0059261_0273 0.57 +1.4
259,486 - Ga0059261_0273 0.57 -1.8
259,486 - Ga0059261_0273 0.57 -0.3
259,486 - Ga0059261_0273 0.57 +0.1

Or see this region's nucleotide sequence