Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0139

Experiment: L-Lysine 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0137 and Ga0059261_0138 overlap by 4 nucleotidesGa0059261_0138 and Ga0059261_0139 are separated by 2 nucleotidesGa0059261_0139 and Ga0059261_0140 overlap by 25 nucleotides Ga0059261_0137: Ga0059261_0137 - nitrogen regulation protein NR(I), at 131,148 to 132,593 _0137 Ga0059261_0138: Ga0059261_0138 - hypothetical protein, at 132,590 to 132,841 _0138 Ga0059261_0139: Ga0059261_0139 - Signal transduction histidine kinase, nitrogen specific, at 132,844 to 133,956 _0139 Ga0059261_0140: Ga0059261_0140 - tRNA-U20-dihydrouridine synthase, at 133,932 to 134,957 _0140 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1 2at 132.142 kb on + strand, within Ga0059261_0137at 132.143 kb on - strand, within Ga0059261_0137at 132.143 kb on - strand, within Ga0059261_0137at 132.192 kb on + strand, within Ga0059261_0137at 132.289 kb on + strand, within Ga0059261_0137at 132.289 kb on + strand, within Ga0059261_0137at 132.290 kb on - strand, within Ga0059261_0137at 132.290 kb on - strandat 132.374 kb on - strand, within Ga0059261_0137at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strandat 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.633 kb on + strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.634 kb on - strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strand, within Ga0059261_0138at 132.693 kb on + strandat 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strandat 132.694 kb on - strand, within Ga0059261_0138at 132.694 kb on - strand, within Ga0059261_0138at 132.742 kb on - strand, within Ga0059261_0138at 132.786 kb on + strand, within Ga0059261_0138at 132.786 kb on + strand, within Ga0059261_0138at 132.786 kb on + strand, within Ga0059261_0138at 132.787 kb on - strand, within Ga0059261_0138at 132.787 kb on - strand, within Ga0059261_0138at 132.827 kb on - strandat 132.841 kb on + strandat 132.841 kb on + strandat 132.841 kb on + strandat 132.841 kb on + strandat 132.842 kb on - strandat 132.908 kb on + strandat 132.908 kb on + strandat 132.934 kb on + strandat 132.934 kb on + strandat 132.935 kb on - strandat 132.935 kb on - strandat 132.935 kb on - strandat 133.118 kb on + strandat 133.119 kb on - strand, within Ga0059261_0139at 133.119 kb on - strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.541 kb on - strand, within Ga0059261_0139at 133.742 kb on + strand, within Ga0059261_0139at 133.743 kb on - strand, within Ga0059261_0139at 133.764 kb on + strand, within Ga0059261_0139at 133.800 kb on + strand, within Ga0059261_0139at 133.800 kb on + strand, within Ga0059261_0139at 133.800 kb on + strandat 133.800 kb on + strand, within Ga0059261_0139at 133.801 kb on - strand, within Ga0059261_0139at 133.837 kb on + strand, within Ga0059261_0139at 133.837 kb on + strand, within Ga0059261_0139at 133.838 kb on - strand, within Ga0059261_0139at 133.956 kb on + strandat 133.956 kb on + strandat 133.956 kb on + strandat 133.957 kb on - strandat 133.957 kb on - strandat 133.957 kb on - strandat 133.957 kb on - strandat 133.957 kb on - strandat 133.990 kb on + strandat 133.990 kb on + strandat 133.990 kb on + strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 134.084 kb on - strand, within Ga0059261_0140at 134.131 kb on + strand, within Ga0059261_0140at 134.131 kb on + strand, within Ga0059261_0140at 134.152 kb on + strand, within Ga0059261_0140at 134.153 kb on - strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.174 kb on - strand, within Ga0059261_0140at 134.174 kb on - strand, within Ga0059261_0140at 134.257 kb on + strand, within Ga0059261_0140at 134.410 kb on + strand, within Ga0059261_0140at 134.410 kb on + strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.624 kb on + strand, within Ga0059261_0140at 134.625 kb on - strand, within Ga0059261_0140at 134.625 kb on - strand, within Ga0059261_0140at 134.710 kb on + strand, within Ga0059261_0140at 134.711 kb on - strand, within Ga0059261_0140at 134.845 kb on + strand, within Ga0059261_0140at 134.845 kb on + strand, within Ga0059261_0140

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 25 mM
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132,142 + Ga0059261_0137 0.69 -0.3
132,143 - Ga0059261_0137 0.69 +0.4
132,143 - Ga0059261_0137 0.69 -0.6
132,192 + Ga0059261_0137 0.72 +0.0
132,289 + Ga0059261_0137 0.79 +0.2
132,289 + Ga0059261_0137 0.79 -0.3
132,290 - Ga0059261_0137 0.79 -0.6
132,290 - -0.2
132,374 - Ga0059261_0137 0.85 -0.2
132,633 + Ga0059261_0138 0.17 +0.2
132,633 + Ga0059261_0138 0.17 +0.5
132,633 + Ga0059261_0138 0.17 -0.9
132,633 + Ga0059261_0138 0.17 -0.2
132,633 + Ga0059261_0138 0.17 +0.6
132,633 + Ga0059261_0138 0.17 +0.4
132,633 + Ga0059261_0138 0.17 -1.6
132,633 + Ga0059261_0138 0.17 +1.8
132,633 + Ga0059261_0138 0.17 +0.8
132,633 + Ga0059261_0138 0.17 +0.3
132,633 + Ga0059261_0138 0.17 +0.4
132,633 + +0.8
132,633 + Ga0059261_0138 0.17 +0.1
132,633 + Ga0059261_0138 0.17 +1.3
132,633 + Ga0059261_0138 0.17 +0.6
132,633 + Ga0059261_0138 0.17 +0.6
132,634 - Ga0059261_0138 0.17 +0.1
132,634 - Ga0059261_0138 0.17 -0.0
132,634 - Ga0059261_0138 0.17 -0.1
132,634 - Ga0059261_0138 0.17 -0.7
132,634 - Ga0059261_0138 0.17 +1.5
132,634 - Ga0059261_0138 0.17 +0.1
132,634 - Ga0059261_0138 0.17 +0.2
132,634 - Ga0059261_0138 0.17 +0.6
132,634 - Ga0059261_0138 0.17 -0.2
132,634 - Ga0059261_0138 0.17 +0.9
132,634 - Ga0059261_0138 0.17 +0.2
132,634 - Ga0059261_0138 0.17 -1.0
132,634 - Ga0059261_0138 0.17 +0.1
132,634 - Ga0059261_0138 0.17 -1.4
132,634 - Ga0059261_0138 0.17 +0.5
132,693 + Ga0059261_0138 0.41 +0.4
132,693 + Ga0059261_0138 0.41 +0.7
132,693 + Ga0059261_0138 0.41 -0.1
132,693 + Ga0059261_0138 0.41 +0.1
132,693 + Ga0059261_0138 0.41 -0.6
132,693 + Ga0059261_0138 0.41 -1.4
132,693 + Ga0059261_0138 0.41 +0.1
132,693 + Ga0059261_0138 0.41 +0.4
132,693 + Ga0059261_0138 0.41 -1.2
132,693 + Ga0059261_0138 0.41 +0.7
132,693 + Ga0059261_0138 0.41 -0.1
132,693 + Ga0059261_0138 0.41 +0.8
132,693 + Ga0059261_0138 0.41 +0.1
132,693 + Ga0059261_0138 0.41 +0.8
132,693 + Ga0059261_0138 0.41 -0.1
132,693 + Ga0059261_0138 0.41 -0.6
132,693 + Ga0059261_0138 0.41 +0.5
132,693 + -1.2
132,694 - Ga0059261_0138 0.41 -0.2
132,694 - Ga0059261_0138 0.41 -0.3
132,694 - Ga0059261_0138 0.41 -0.2
132,694 - Ga0059261_0138 0.41 +0.1
132,694 - Ga0059261_0138 0.41 +0.3
132,694 - Ga0059261_0138 0.41 +0.5
132,694 - Ga0059261_0138 0.41 +0.1
132,694 - Ga0059261_0138 0.41 +0.1
132,694 - +0.2
132,694 - Ga0059261_0138 0.41 -0.2
132,694 - Ga0059261_0138 0.41 +0.2
132,742 - Ga0059261_0138 0.60 +0.9
132,786 + Ga0059261_0138 0.78 +0.2
132,786 + Ga0059261_0138 0.78 -0.6
132,786 + Ga0059261_0138 0.78 +0.6
132,787 - Ga0059261_0138 0.78 +0.8
132,787 - Ga0059261_0138 0.78 +0.0
132,827 - -0.6
132,841 + -0.4
132,841 + -0.0
132,841 + +0.7
132,841 + -0.1
132,842 - -0.1
132,908 + -0.8
132,908 + -0.8
132,934 + -1.2
132,934 + -0.2
132,935 - -0.2
132,935 - +0.7
132,935 - +0.3
133,118 + +0.8
133,119 - Ga0059261_0139 0.25 +0.2
133,119 - Ga0059261_0139 0.25 +0.0
133,319 + Ga0059261_0139 0.43 +0.9
133,319 + Ga0059261_0139 0.43 +1.1
133,319 + Ga0059261_0139 0.43 +1.5
133,319 + Ga0059261_0139 0.43 -0.1
133,319 + Ga0059261_0139 0.43 +0.2
133,319 + Ga0059261_0139 0.43 +0.4
133,319 + Ga0059261_0139 0.43 +0.9
133,319 + Ga0059261_0139 0.43 -0.3
133,319 + Ga0059261_0139 0.43 +0.4
133,319 + Ga0059261_0139 0.43 -0.4
133,320 - Ga0059261_0139 0.43 -1.0
133,320 - Ga0059261_0139 0.43 -0.4
133,320 - Ga0059261_0139 0.43 +0.5
133,320 - Ga0059261_0139 0.43 +0.3
133,541 - Ga0059261_0139 0.63 +0.1
133,742 + Ga0059261_0139 0.81 +0.4
133,743 - Ga0059261_0139 0.81 -0.2
133,764 + Ga0059261_0139 0.83 -0.8
133,800 + Ga0059261_0139 0.86 +0.7
133,800 + Ga0059261_0139 0.86 +0.2
133,800 + +0.4
133,800 + Ga0059261_0139 0.86 -0.3
133,801 - Ga0059261_0139 0.86 -0.2
133,837 + Ga0059261_0139 0.89 +0.2
133,837 + Ga0059261_0139 0.89 +0.1
133,838 - Ga0059261_0139 0.89 +0.0
133,956 + +0.1
133,956 + +0.1
133,956 + -0.5
133,957 - -0.2
133,957 - +0.1
133,957 - -2.2
133,957 - -0.8
133,957 - +1.1
133,990 + +0.5
133,990 + -0.4
133,990 + +0.4
133,991 - +0.1
133,991 - -0.4
133,991 - +0.1
133,991 - +0.6
133,991 - -1.2
133,991 - -1.1
133,991 - -0.9
134,084 - Ga0059261_0140 0.15 +0.0
134,131 + Ga0059261_0140 0.19 +0.3
134,131 + Ga0059261_0140 0.19 +0.4
134,152 + Ga0059261_0140 0.21 -0.1
134,153 - Ga0059261_0140 0.22 -0.4
134,173 + Ga0059261_0140 0.23 +0.0
134,173 + Ga0059261_0140 0.23 +0.7
134,173 + Ga0059261_0140 0.23 +0.2
134,174 - Ga0059261_0140 0.24 +0.1
134,174 - Ga0059261_0140 0.24 -0.3
134,257 + Ga0059261_0140 0.32 +0.5
134,410 + Ga0059261_0140 0.47 +0.1
134,410 + Ga0059261_0140 0.47 +0.4
134,411 - Ga0059261_0140 0.47 +0.4
134,411 - Ga0059261_0140 0.47 -0.2
134,411 - Ga0059261_0140 0.47 -0.4
134,411 - Ga0059261_0140 0.47 +0.8
134,411 - Ga0059261_0140 0.47 +0.4
134,624 + Ga0059261_0140 0.67 -0.7
134,625 - Ga0059261_0140 0.68 -1.5
134,625 - Ga0059261_0140 0.68 -0.1
134,710 + Ga0059261_0140 0.76 +0.3
134,711 - Ga0059261_0140 0.76 +0.7
134,845 + Ga0059261_0140 0.89 +0.1
134,845 + Ga0059261_0140 0.89 +1.4

Or see this region's nucleotide sequence