Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0028

Experiment: L-Lysine 25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0027 and Ga0059261_0028 are separated by 88 nucleotidesGa0059261_0028 and Ga0059261_0029 are separated by 41 nucleotidesGa0059261_0029 and Ga0059261_0030 are separated by 25 nucleotides Ga0059261_0027: Ga0059261_0027 - hypothetical protein, at 23,672 to 24,655 _0027 Ga0059261_0028: Ga0059261_0028 - Predicted transcriptional regulators, at 24,744 to 25,292 _0028 Ga0059261_0029: Ga0059261_0029 - Predicted lactoylglutathione lyase, at 25,334 to 25,711 _0029 Ga0059261_0030: Ga0059261_0030 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 25,737 to 26,549 _0030 Position (kb) 24 25 26Strain fitness (log2 ratio) -1 0 1 2at 23.760 kb on + strandat 23.760 kb on + strandat 23.797 kb on + strand, within Ga0059261_0027at 23.798 kb on - strand, within Ga0059261_0027at 23.841 kb on + strand, within Ga0059261_0027at 23.841 kb on + strand, within Ga0059261_0027at 23.842 kb on - strand, within Ga0059261_0027at 23.842 kb on - strand, within Ga0059261_0027at 23.842 kb on - strand, within Ga0059261_0027at 24.135 kb on + strand, within Ga0059261_0027at 24.135 kb on + strand, within Ga0059261_0027at 24.135 kb on + strand, within Ga0059261_0027at 24.135 kb on + strandat 24.135 kb on + strand, within Ga0059261_0027at 24.136 kb on - strand, within Ga0059261_0027at 24.136 kb on - strand, within Ga0059261_0027at 24.136 kb on - strand, within Ga0059261_0027at 24.136 kb on - strand, within Ga0059261_0027at 24.136 kb on - strand, within Ga0059261_0027at 24.136 kb on - strand, within Ga0059261_0027at 24.136 kb on - strand, within Ga0059261_0027at 24.138 kb on + strand, within Ga0059261_0027at 24.138 kb on + strand, within Ga0059261_0027at 24.139 kb on - strand, within Ga0059261_0027at 24.139 kb on - strand, within Ga0059261_0027at 24.139 kb on - strand, within Ga0059261_0027at 24.139 kb on - strand, within Ga0059261_0027at 24.139 kb on - strand, within Ga0059261_0027at 24.315 kb on + strand, within Ga0059261_0027at 24.444 kb on + strand, within Ga0059261_0027at 24.444 kb on + strand, within Ga0059261_0027at 24.445 kb on - strand, within Ga0059261_0027at 24.445 kb on - strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.483 kb on + strand, within Ga0059261_0027at 24.484 kb on - strand, within Ga0059261_0027at 24.484 kb on - strand, within Ga0059261_0027at 24.484 kb on - strandat 24.484 kb on - strand, within Ga0059261_0027at 24.484 kb on - strand, within Ga0059261_0027at 24.573 kb on + strandat 24.573 kb on + strandat 24.573 kb on + strandat 24.573 kb on + strandat 24.573 kb on + strandat 24.573 kb on + strandat 24.574 kb on - strandat 24.574 kb on - strandat 24.574 kb on - strandat 24.815 kb on + strand, within Ga0059261_0028at 24.815 kb on + strand, within Ga0059261_0028at 24.815 kb on + strand, within Ga0059261_0028at 24.816 kb on - strand, within Ga0059261_0028at 24.816 kb on - strand, within Ga0059261_0028at 24.816 kb on - strand, within Ga0059261_0028at 24.845 kb on - strand, within Ga0059261_0028at 24.951 kb on + strand, within Ga0059261_0028at 25.084 kb on + strand, within Ga0059261_0028at 25.085 kb on - strand, within Ga0059261_0028at 25.085 kb on - strandat 25.085 kb on - strand, within Ga0059261_0028at 25.085 kb on - strand, within Ga0059261_0028at 25.180 kb on + strand, within Ga0059261_0028at 25.181 kb on - strand, within Ga0059261_0028at 25.388 kb on + strand, within Ga0059261_0029at 25.388 kb on + strand, within Ga0059261_0029at 25.388 kb on + strand, within Ga0059261_0029at 25.389 kb on - strand, within Ga0059261_0029at 25.389 kb on - strand, within Ga0059261_0029at 25.410 kb on + strand, within Ga0059261_0029at 25.410 kb on + strand, within Ga0059261_0029at 25.411 kb on - strand, within Ga0059261_0029at 25.411 kb on - strand, within Ga0059261_0029at 25.517 kb on - strand, within Ga0059261_0029at 25.631 kb on + strand, within Ga0059261_0029at 25.631 kb on + strand, within Ga0059261_0029at 25.631 kb on + strand, within Ga0059261_0029at 25.632 kb on - strand, within Ga0059261_0029at 25.632 kb on - strand, within Ga0059261_0029at 25.632 kb on - strand, within Ga0059261_0029at 25.632 kb on - strand, within Ga0059261_0029at 25.632 kb on - strand, within Ga0059261_0029at 25.632 kb on - strand, within Ga0059261_0029at 25.644 kb on - strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.646 kb on + strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.647 kb on - strand, within Ga0059261_0029at 25.738 kb on + strandat 25.739 kb on - strandat 26.076 kb on - strand, within Ga0059261_0030at 26.076 kb on - strand, within Ga0059261_0030at 26.076 kb on - strand, within Ga0059261_0030at 26.176 kb on + strand, within Ga0059261_0030at 26.176 kb on + strand, within Ga0059261_0030at 26.176 kb on + strand, within Ga0059261_0030at 26.177 kb on - strand, within Ga0059261_0030at 26.177 kb on - strand, within Ga0059261_0030at 26.267 kb on + strand, within Ga0059261_0030at 26.268 kb on - strand, within Ga0059261_0030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 25 mM
remove
23,760 + -0.1
23,760 + +0.3
23,797 + Ga0059261_0027 0.13 -0.6
23,798 - Ga0059261_0027 0.13 -0.1
23,841 + Ga0059261_0027 0.17 -0.3
23,841 + Ga0059261_0027 0.17 -0.5
23,842 - Ga0059261_0027 0.17 +0.2
23,842 - Ga0059261_0027 0.17 +0.1
23,842 - Ga0059261_0027 0.17 +0.0
24,135 + Ga0059261_0027 0.47 +0.6
24,135 + Ga0059261_0027 0.47 -0.9
24,135 + Ga0059261_0027 0.47 +0.1
24,135 + -0.2
24,135 + Ga0059261_0027 0.47 -0.3
24,136 - Ga0059261_0027 0.47 -1.0
24,136 - Ga0059261_0027 0.47 +0.7
24,136 - Ga0059261_0027 0.47 +0.4
24,136 - Ga0059261_0027 0.47 +0.6
24,136 - Ga0059261_0027 0.47 +0.0
24,136 - Ga0059261_0027 0.47 +0.2
24,136 - Ga0059261_0027 0.47 -0.9
24,138 + Ga0059261_0027 0.47 -0.8
24,138 + Ga0059261_0027 0.47 -0.1
24,139 - Ga0059261_0027 0.47 -0.6
24,139 - Ga0059261_0027 0.47 +0.8
24,139 - Ga0059261_0027 0.47 -0.1
24,139 - Ga0059261_0027 0.47 -0.1
24,139 - Ga0059261_0027 0.47 +0.9
24,315 + Ga0059261_0027 0.65 +0.3
24,444 + Ga0059261_0027 0.78 +0.4
24,444 + Ga0059261_0027 0.78 -0.8
24,445 - Ga0059261_0027 0.79 -0.3
24,445 - Ga0059261_0027 0.79 -0.2
24,483 + Ga0059261_0027 0.82 +0.5
24,483 + Ga0059261_0027 0.82 -0.9
24,483 + Ga0059261_0027 0.82 -0.7
24,483 + Ga0059261_0027 0.82 -0.0
24,483 + Ga0059261_0027 0.82 +0.1
24,483 + Ga0059261_0027 0.82 +0.7
24,483 + Ga0059261_0027 0.82 +0.3
24,483 + Ga0059261_0027 0.82 -0.1
24,483 + Ga0059261_0027 0.82 -1.5
24,483 + Ga0059261_0027 0.82 +1.1
24,484 - Ga0059261_0027 0.83 +0.9
24,484 - Ga0059261_0027 0.83 +0.6
24,484 - +0.4
24,484 - Ga0059261_0027 0.83 -0.3
24,484 - Ga0059261_0027 0.83 +0.2
24,573 + +0.3
24,573 + +0.0
24,573 + -0.5
24,573 + +0.2
24,573 + -0.7
24,573 + -0.2
24,574 - +0.0
24,574 - +1.0
24,574 - -0.1
24,815 + Ga0059261_0028 0.13 +0.6
24,815 + Ga0059261_0028 0.13 +1.1
24,815 + Ga0059261_0028 0.13 -0.4
24,816 - Ga0059261_0028 0.13 +0.0
24,816 - Ga0059261_0028 0.13 +0.4
24,816 - Ga0059261_0028 0.13 +0.5
24,845 - Ga0059261_0028 0.18 +0.1
24,951 + Ga0059261_0028 0.38 -1.1
25,084 + Ga0059261_0028 0.62 +1.3
25,085 - Ga0059261_0028 0.62 +0.2
25,085 - +1.8
25,085 - Ga0059261_0028 0.62 +0.4
25,085 - Ga0059261_0028 0.62 -0.1
25,180 + Ga0059261_0028 0.79 +1.0
25,181 - Ga0059261_0028 0.80 +0.3
25,388 + Ga0059261_0029 0.14 -0.6
25,388 + Ga0059261_0029 0.14 +0.4
25,388 + Ga0059261_0029 0.14 +1.2
25,389 - Ga0059261_0029 0.15 -0.4
25,389 - Ga0059261_0029 0.15 -0.2
25,410 + Ga0059261_0029 0.20 +0.1
25,410 + Ga0059261_0029 0.20 +0.1
25,411 - Ga0059261_0029 0.20 +0.0
25,411 - Ga0059261_0029 0.20 -0.4
25,517 - Ga0059261_0029 0.48 -0.5
25,631 + Ga0059261_0029 0.79 +1.1
25,631 + Ga0059261_0029 0.79 -0.9
25,631 + Ga0059261_0029 0.79 -0.2
25,632 - Ga0059261_0029 0.79 +0.5
25,632 - Ga0059261_0029 0.79 +0.3
25,632 - Ga0059261_0029 0.79 +0.8
25,632 - Ga0059261_0029 0.79 -1.0
25,632 - Ga0059261_0029 0.79 +0.5
25,632 - Ga0059261_0029 0.79 +0.6
25,644 - Ga0059261_0029 0.82 +1.1
25,646 + Ga0059261_0029 0.83 -0.8
25,646 + Ga0059261_0029 0.83 -0.0
25,646 + Ga0059261_0029 0.83 -0.7
25,646 + Ga0059261_0029 0.83 -0.3
25,646 + Ga0059261_0029 0.83 -0.6
25,646 + Ga0059261_0029 0.83 -0.3
25,646 + Ga0059261_0029 0.83 +0.6
25,646 + Ga0059261_0029 0.83 -0.5
25,646 + Ga0059261_0029 0.83 +0.1
25,646 + Ga0059261_0029 0.83 -0.5
25,647 - Ga0059261_0029 0.83 +0.7
25,647 - Ga0059261_0029 0.83 +0.2
25,647 - Ga0059261_0029 0.83 +0.8
25,647 - Ga0059261_0029 0.83 -1.0
25,647 - Ga0059261_0029 0.83 -0.1
25,647 - Ga0059261_0029 0.83 -1.0
25,647 - Ga0059261_0029 0.83 +0.0
25,647 - Ga0059261_0029 0.83 +0.6
25,647 - Ga0059261_0029 0.83 +0.6
25,647 - Ga0059261_0029 0.83 -0.4
25,647 - Ga0059261_0029 0.83 -0.8
25,738 + +0.3
25,739 - +0.2
26,076 - Ga0059261_0030 0.42 -0.7
26,076 - Ga0059261_0030 0.42 +0.3
26,076 - Ga0059261_0030 0.42 -0.5
26,176 + Ga0059261_0030 0.54 +0.0
26,176 + Ga0059261_0030 0.54 +0.4
26,176 + Ga0059261_0030 0.54 +0.1
26,177 - Ga0059261_0030 0.54 +0.1
26,177 - Ga0059261_0030 0.54 +0.8
26,267 + Ga0059261_0030 0.65 +0.9
26,268 - Ga0059261_0030 0.65 +0.0

Or see this region's nucleotide sequence