Strain Fitness in Rahnella sp. WP5 around EX31_RS26100

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20830 and EX31_RS26100 are separated by 164 nucleotidesEX31_RS26100 and EX31_RS20835 are separated by 70 nucleotidesEX31_RS20835 and EX31_RS20840 are separated by 36 nucleotidesEX31_RS20840 and EX31_RS20845 are separated by 32 nucleotidesEX31_RS20845 and EX31_RS25590 overlap by 1 nucleotides EX31_RS20830: EX31_RS20830 - LysR family transcriptional regulator, at 815,202 to 816,095 _RS20830 EX31_RS26100: EX31_RS26100 - AraC family transcriptional regulator, at 816,260 to 816,334 _RS26100 EX31_RS20835: EX31_RS20835 - NIPSNAP family containing protein, at 816,405 to 816,731 _RS20835 EX31_RS20840: EX31_RS20840 - hypothetical protein, at 816,768 to 816,989 _RS20840 EX31_RS20845: EX31_RS20845 - hypothetical protein, at 817,022 to 817,273 _RS20845 EX31_RS25590: EX31_RS25590 - hypothetical protein, at 817,273 to 817,407 _RS25590 Position (kb) 816 817Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 815.269 kb on + strandat 815.270 kb on - strandat 815.270 kb on - strandat 815.270 kb on - strandat 815.272 kb on + strandat 815.272 kb on + strandat 815.273 kb on - strandat 815.278 kb on + strandat 815.278 kb on + strandat 815.337 kb on + strand, within EX31_RS20830at 815.338 kb on - strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.349 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.365 kb on - strand, within EX31_RS20830at 815.365 kb on - strand, within EX31_RS20830at 815.366 kb on + strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.389 kb on - strand, within EX31_RS20830at 815.421 kb on - strand, within EX31_RS20830at 815.421 kb on - strand, within EX31_RS20830at 815.514 kb on - strand, within EX31_RS20830at 815.536 kb on - strand, within EX31_RS20830at 815.575 kb on + strand, within EX31_RS20830at 815.575 kb on + strand, within EX31_RS20830at 815.576 kb on - strand, within EX31_RS20830at 815.691 kb on - strand, within EX31_RS20830at 815.691 kb on - strand, within EX31_RS20830at 815.727 kb on - strand, within EX31_RS20830at 815.802 kb on + strand, within EX31_RS20830at 815.810 kb on + strand, within EX31_RS20830at 815.810 kb on + strand, within EX31_RS20830at 815.811 kb on - strand, within EX31_RS20830at 815.811 kb on - strand, within EX31_RS20830at 815.895 kb on - strand, within EX31_RS20830at 815.895 kb on - strand, within EX31_RS20830at 816.052 kb on - strandat 816.127 kb on + strandat 816.128 kb on - strandat 816.128 kb on - strandat 816.190 kb on + strandat 816.203 kb on - strandat 816.217 kb on + strandat 816.217 kb on + strandat 816.218 kb on - strandat 816.218 kb on - strandat 816.229 kb on - strandat 816.282 kb on + strand, within EX31_RS26100at 816.282 kb on + strand, within EX31_RS26100at 816.283 kb on - strand, within EX31_RS26100at 816.283 kb on - strand, within EX31_RS26100at 816.287 kb on - strand, within EX31_RS26100at 816.339 kb on + strandat 816.339 kb on + strandat 816.339 kb on + strandat 816.340 kb on - strandat 816.373 kb on + strandat 816.389 kb on - strandat 816.390 kb on + strandat 816.398 kb on + strandat 816.399 kb on - strandat 816.429 kb on + strandat 816.429 kb on + strandat 816.430 kb on - strandat 816.430 kb on - strandat 816.430 kb on - strandat 816.436 kb on + strandat 816.437 kb on - strandat 816.555 kb on + strand, within EX31_RS20835at 816.555 kb on + strand, within EX31_RS20835at 816.555 kb on + strand, within EX31_RS20835at 816.556 kb on - strand, within EX31_RS20835at 816.558 kb on + strand, within EX31_RS20835at 816.558 kb on + strand, within EX31_RS20835at 816.558 kb on + strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.662 kb on + strand, within EX31_RS20835at 816.662 kb on + strand, within EX31_RS20835at 816.662 kb on + strand, within EX31_RS20835at 816.663 kb on - strand, within EX31_RS20835at 816.680 kb on + strand, within EX31_RS20835at 816.680 kb on + strand, within EX31_RS20835at 816.729 kb on + strandat 816.748 kb on + strandat 816.748 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.751 kb on - strandat 816.751 kb on - strandat 816.751 kb on - strandat 816.755 kb on + strandat 816.755 kb on + strandat 816.755 kb on + strandat 816.755 kb on + strandat 816.756 kb on - strandat 816.758 kb on + strandat 816.764 kb on + strandat 816.784 kb on + strandat 816.784 kb on + strandat 816.784 kb on + strandat 816.784 kb on + strandat 816.785 kb on - strandat 816.785 kb on - strandat 816.911 kb on - strand, within EX31_RS20840at 816.911 kb on - strand, within EX31_RS20840at 816.914 kb on + strand, within EX31_RS20840at 816.915 kb on - strand, within EX31_RS20840at 816.993 kb on + strandat 816.994 kb on - strandat 816.995 kb on + strandat 817.000 kb on + strandat 817.001 kb on - strandat 817.007 kb on + strandat 817.007 kb on + strandat 817.023 kb on + strandat 817.098 kb on - strand, within EX31_RS20845at 817.114 kb on + strand, within EX31_RS20845at 817.142 kb on - strand, within EX31_RS20845at 817.153 kb on + strand, within EX31_RS20845at 817.154 kb on - strand, within EX31_RS20845at 817.199 kb on - strand, within EX31_RS20845at 817.199 kb on - strand, within EX31_RS20845at 817.215 kb on - strand, within EX31_RS20845at 817.226 kb on + strand, within EX31_RS20845at 817.226 kb on + strand, within EX31_RS20845at 817.261 kb on + strandat 817.261 kb on + strandat 817.262 kb on - strandat 817.262 kb on - strandat 817.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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815,269 + -1.4
815,270 - -1.0
815,270 - -2.1
815,270 - -1.4
815,272 + -2.9
815,272 + -1.6
815,273 - +0.5
815,278 + -1.2
815,278 + +2.7
815,337 + EX31_RS20830 0.15 +0.4
815,338 - EX31_RS20830 0.15 -2.9
815,339 + EX31_RS20830 0.15 -2.0
815,339 + EX31_RS20830 0.15 -0.2
815,339 + EX31_RS20830 0.15 +0.2
815,339 + EX31_RS20830 0.15 -0.8
815,339 + EX31_RS20830 0.15 -3.0
815,340 - EX31_RS20830 0.15 +1.6
815,340 - EX31_RS20830 0.15 +1.4
815,340 - EX31_RS20830 0.15 -2.8
815,340 - EX31_RS20830 0.15 +0.5
815,340 - EX31_RS20830 0.15 -1.6
815,340 - EX31_RS20830 0.15 +1.2
815,340 - EX31_RS20830 0.15 -3.8
815,340 - EX31_RS20830 0.15 -2.0
815,342 - EX31_RS20830 0.16 -2.2
815,342 - EX31_RS20830 0.16 -1.2
815,342 - EX31_RS20830 0.16 -1.0
815,342 - EX31_RS20830 0.16 -0.0
815,342 - EX31_RS20830 0.16 -2.0
815,342 - EX31_RS20830 0.16 -2.0
815,349 + EX31_RS20830 0.16 -1.4
815,364 + EX31_RS20830 0.18 +1.0
815,364 + EX31_RS20830 0.18 -1.8
815,364 + EX31_RS20830 0.18 -0.1
815,365 - EX31_RS20830 0.18 -1.3
815,365 - EX31_RS20830 0.18 +1.5
815,366 + EX31_RS20830 0.18 +0.2
815,367 - EX31_RS20830 0.18 -1.8
815,367 - EX31_RS20830 0.18 -0.1
815,367 - EX31_RS20830 0.18 +0.8
815,367 - EX31_RS20830 0.18 +1.4
815,367 - EX31_RS20830 0.18 -2.8
815,367 - EX31_RS20830 0.18 +0.2
815,389 - EX31_RS20830 0.21 -1.2
815,421 - EX31_RS20830 0.24 -0.1
815,421 - EX31_RS20830 0.24 +0.8
815,514 - EX31_RS20830 0.35 -0.1
815,536 - EX31_RS20830 0.37 +0.0
815,575 + EX31_RS20830 0.42 +0.4
815,575 + EX31_RS20830 0.42 -0.3
815,576 - EX31_RS20830 0.42 +1.4
815,691 - EX31_RS20830 0.55 -2.6
815,691 - EX31_RS20830 0.55 +1.9
815,727 - EX31_RS20830 0.59 +2.4
815,802 + EX31_RS20830 0.67 -2.4
815,810 + EX31_RS20830 0.68 +0.8
815,810 + EX31_RS20830 0.68 +1.2
815,811 - EX31_RS20830 0.68 +0.8
815,811 - EX31_RS20830 0.68 -1.2
815,895 - EX31_RS20830 0.78 -0.2
815,895 - EX31_RS20830 0.78 -1.0
816,052 - -1.8
816,127 + -2.4
816,128 - +0.4
816,128 - +2.0
816,190 + -0.2
816,203 - -2.0
816,217 + -1.4
816,217 + -0.8
816,218 - +0.4
816,218 - +1.8
816,229 - +1.0
816,282 + EX31_RS26100 0.29 +2.1
816,282 + EX31_RS26100 0.29 -3.0
816,283 - EX31_RS26100 0.31 +0.9
816,283 - EX31_RS26100 0.31 +0.7
816,287 - EX31_RS26100 0.36 -1.2
816,339 + -2.0
816,339 + -3.0
816,339 + -0.7
816,340 - +1.4
816,373 + +1.0
816,389 - +1.4
816,390 + +1.4
816,398 + +2.2
816,399 - -2.6
816,429 + -1.6
816,429 + +1.7
816,430 - +0.6
816,430 - +0.4
816,430 - +2.7
816,436 + +1.1
816,437 - +0.6
816,555 + EX31_RS20835 0.46 +1.9
816,555 + EX31_RS20835 0.46 -1.2
816,555 + EX31_RS20835 0.46 -0.2
816,556 - EX31_RS20835 0.46 +0.3
816,558 + EX31_RS20835 0.47 -0.8
816,558 + EX31_RS20835 0.47 +1.0
816,558 + EX31_RS20835 0.47 -3.2
816,559 - EX31_RS20835 0.47 -0.2
816,559 - EX31_RS20835 0.47 +1.4
816,559 - EX31_RS20835 0.47 -3.0
816,559 - EX31_RS20835 0.47 -1.0
816,559 - EX31_RS20835 0.47 +2.2
816,615 + EX31_RS20835 0.64 +1.4
816,615 + EX31_RS20835 0.64 +1.6
816,615 + EX31_RS20835 0.64 +2.4
816,615 + EX31_RS20835 0.64 -0.6
816,615 + EX31_RS20835 0.64 -0.6
816,616 - EX31_RS20835 0.65 -2.0
816,616 - EX31_RS20835 0.65 +0.1
816,616 - EX31_RS20835 0.65 -1.1
816,616 - EX31_RS20835 0.65 +1.4
816,616 - EX31_RS20835 0.65 +0.9
816,616 - EX31_RS20835 0.65 -2.3
816,616 - EX31_RS20835 0.65 -0.2
816,662 + EX31_RS20835 0.79 -0.2
816,662 + EX31_RS20835 0.79 -2.6
816,662 + EX31_RS20835 0.79 +1.2
816,663 - EX31_RS20835 0.79 +1.6
816,680 + EX31_RS20835 0.84 +1.1
816,680 + EX31_RS20835 0.84 +1.0
816,729 + +0.9
816,748 + -2.8
816,748 + -0.2
816,750 + +1.7
816,750 + +0.4
816,750 + +2.8
816,750 + -1.8
816,750 + -2.3
816,750 + +1.3
816,751 - -0.6
816,751 - -1.6
816,751 - -0.6
816,755 + -1.4
816,755 + +1.1
816,755 + -0.2
816,755 + +0.7
816,756 - +0.4
816,758 + -1.8
816,764 + -2.2
816,784 + +2.4
816,784 + -2.3
816,784 + -1.4
816,784 + +2.2
816,785 - +0.9
816,785 - -1.0
816,911 - EX31_RS20840 0.64 -1.6
816,911 - EX31_RS20840 0.64 -1.6
816,914 + EX31_RS20840 0.66 +1.4
816,915 - EX31_RS20840 0.66 -0.1
816,993 + -1.6
816,994 - +0.9
816,995 + +0.6
817,000 + -2.0
817,001 - -0.6
817,007 + +1.2
817,007 + -0.6
817,023 + +0.5
817,098 - EX31_RS20845 0.30 -2.3
817,114 + EX31_RS20845 0.37 -0.2
817,142 - EX31_RS20845 0.48 -2.3
817,153 + EX31_RS20845 0.52 +1.1
817,154 - EX31_RS20845 0.52 +2.1
817,199 - EX31_RS20845 0.70 -2.3
817,199 - EX31_RS20845 0.70 -1.1
817,215 - EX31_RS20845 0.77 +0.8
817,226 + EX31_RS20845 0.81 +2.6
817,226 + EX31_RS20845 0.81 -1.4
817,261 + +1.6
817,261 + -1.6
817,262 - +0.0
817,262 - -2.0
817,275 - +1.6

Or see this region's nucleotide sequence