Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17625 and EX31_RS26085 are separated by 45 nucleotides EX31_RS26085 and EX31_RS17630 are separated by 303 nucleotides
EX31_RS17625: EX31_RS17625 - LysR family transcriptional regulator, at 76,126 to 77,025
_RS17625
EX31_RS26085: EX31_RS26085 - alpha/beta hydrolase, at 77,071 to 77,202
_RS26085
EX31_RS17630: EX31_RS17630 - zinc-binding alcohol dehydrogenase family protein, at 77,506 to 78,441
_RS17630
Position (kb) 77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 76.086 kb on - strand at 76.090 kb on - strand at 76.090 kb on - strand at 76.092 kb on + strand at 76.141 kb on + strand at 76.141 kb on + strand at 76.142 kb on - strand at 76.142 kb on - strand at 76.155 kb on + strand at 76.215 kb on - strand at 76.260 kb on + strand, within EX31_RS17625 at 76.261 kb on - strand, within EX31_RS17625 at 76.261 kb on - strand, within EX31_RS17625 at 76.261 kb on - strand, within EX31_RS17625 at 76.438 kb on + strand, within EX31_RS17625 at 76.439 kb on - strand, within EX31_RS17625 at 76.439 kb on - strand, within EX31_RS17625 at 76.462 kb on - strand, within EX31_RS17625 at 76.493 kb on + strand, within EX31_RS17625 at 76.493 kb on + strand, within EX31_RS17625 at 76.494 kb on - strand, within EX31_RS17625 at 76.630 kb on + strand, within EX31_RS17625 at 76.630 kb on + strand, within EX31_RS17625 at 76.630 kb on + strand, within EX31_RS17625 at 76.630 kb on + strand, within EX31_RS17625 at 76.631 kb on - strand, within EX31_RS17625 at 76.663 kb on - strand, within EX31_RS17625 at 76.717 kb on - strand, within EX31_RS17625 at 76.756 kb on - strand, within EX31_RS17625 at 76.756 kb on - strand, within EX31_RS17625 at 76.829 kb on + strand, within EX31_RS17625 at 76.829 kb on + strand, within EX31_RS17625 at 76.871 kb on - strand, within EX31_RS17625 at 76.930 kb on + strand, within EX31_RS17625 at 76.931 kb on - strand, within EX31_RS17625 at 76.942 kb on + strand at 76.943 kb on - strand at 76.948 kb on + strand at 76.951 kb on + strand at 76.951 kb on + strand at 76.955 kb on + strand at 76.955 kb on + strand at 76.956 kb on - strand at 77.035 kb on + strand at 77.077 kb on + strand at 77.077 kb on + strand at 77.077 kb on + strand at 77.078 kb on - strand at 77.078 kb on - strand at 77.078 kb on - strand at 77.079 kb on + strand at 77.079 kb on + strand at 77.080 kb on - strand at 77.118 kb on + strand, within EX31_RS26085 at 77.118 kb on + strand, within EX31_RS26085 at 77.119 kb on - strand, within EX31_RS26085 at 77.205 kb on + strand at 77.235 kb on + strand at 77.250 kb on - strand at 77.258 kb on + strand at 77.305 kb on + strand at 77.359 kb on + strand at 77.360 kb on - strand at 77.360 kb on - strand at 77.360 kb on - strand at 77.436 kb on - strand at 77.502 kb on - strand at 77.620 kb on + strand, within EX31_RS17630 at 77.621 kb on - strand, within EX31_RS17630 at 77.623 kb on + strand, within EX31_RS17630 at 77.659 kb on + strand, within EX31_RS17630 at 77.659 kb on + strand, within EX31_RS17630 at 77.660 kb on - strand, within EX31_RS17630 at 77.660 kb on - strand, within EX31_RS17630 at 77.660 kb on - strand, within EX31_RS17630 at 77.704 kb on + strand, within EX31_RS17630 at 77.705 kb on - strand, within EX31_RS17630 at 77.707 kb on + strand, within EX31_RS17630 at 77.708 kb on - strand, within EX31_RS17630 at 77.708 kb on - strand, within EX31_RS17630 at 77.715 kb on + strand, within EX31_RS17630 at 77.719 kb on + strand, within EX31_RS17630 at 77.719 kb on + strand, within EX31_RS17630 at 77.719 kb on + strand, within EX31_RS17630 at 77.719 kb on + strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.720 kb on - strand, within EX31_RS17630 at 77.726 kb on - strand, within EX31_RS17630 at 77.740 kb on + strand, within EX31_RS17630 at 77.741 kb on - strand, within EX31_RS17630 at 77.741 kb on - strand, within EX31_RS17630 at 77.802 kb on + strand, within EX31_RS17630 at 77.803 kb on - strand, within EX31_RS17630 at 77.803 kb on - strand, within EX31_RS17630 at 77.803 kb on - strand, within EX31_RS17630 at 77.882 kb on - strand, within EX31_RS17630 at 77.895 kb on + strand, within EX31_RS17630 at 77.905 kb on - strand, within EX31_RS17630 at 77.946 kb on + strand, within EX31_RS17630 at 78.153 kb on + strand, within EX31_RS17630 at 78.153 kb on + strand, within EX31_RS17630 at 78.159 kb on + strand, within EX31_RS17630 at 78.165 kb on + strand, within EX31_RS17630
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 76,086 - -2.2 76,090 - +3.0 76,090 - -3.0 76,092 + -0.7 76,141 + +1.1 76,141 + +0.1 76,142 - -2.0 76,142 - +1.7 76,155 + -0.4 76,215 - -0.9 76,260 + EX31_RS17625 0.15 -1.7 76,261 - EX31_RS17625 0.15 +1.0 76,261 - EX31_RS17625 0.15 -3.1 76,261 - EX31_RS17625 0.15 -0.4 76,438 + EX31_RS17625 0.35 -2.2 76,439 - EX31_RS17625 0.35 +1.1 76,439 - EX31_RS17625 0.35 -2.0 76,462 - EX31_RS17625 0.37 +0.9 76,493 + EX31_RS17625 0.41 -0.9 76,493 + EX31_RS17625 0.41 +1.1 76,494 - EX31_RS17625 0.41 +0.1 76,630 + EX31_RS17625 0.56 -0.9 76,630 + EX31_RS17625 0.56 -2.0 76,630 + EX31_RS17625 0.56 -1.4 76,630 + EX31_RS17625 0.56 -2.4 76,631 - EX31_RS17625 0.56 +2.5 76,663 - EX31_RS17625 0.60 +0.6 76,717 - EX31_RS17625 0.66 -1.2 76,756 - EX31_RS17625 0.70 +2.3 76,756 - EX31_RS17625 0.70 -2.3 76,829 + EX31_RS17625 0.78 +0.7 76,829 + EX31_RS17625 0.78 -1.4 76,871 - EX31_RS17625 0.83 +1.1 76,930 + EX31_RS17625 0.89 -0.9 76,931 - EX31_RS17625 0.89 -1.4 76,942 + +3.5 76,943 - -0.4 76,948 + +0.1 76,951 + +0.1 76,951 + -0.4 76,955 + +1.1 76,955 + +2.1 76,956 - +1.1 77,035 + -0.9 77,077 + +1.9 77,077 + -0.2 77,077 + +2.4 77,078 - +1.0 77,078 - +1.0 77,078 - -2.2 77,079 + -1.7 77,079 + -1.7 77,080 - -0.9 77,118 + EX31_RS26085 0.36 -1.4 77,118 + EX31_RS26085 0.36 -1.9 77,119 - EX31_RS26085 0.36 -1.2 77,205 + +0.4 77,235 + -1.2 77,250 - -2.6 77,258 + +1.1 77,305 + +1.9 77,359 + +1.5 77,360 - +1.1 77,360 - -0.4 77,360 - +0.1 77,436 - -0.9 77,502 - -1.4 77,620 + EX31_RS17630 0.12 +1.9 77,621 - EX31_RS17630 0.12 -1.2 77,623 + EX31_RS17630 0.12 -0.4 77,659 + EX31_RS17630 0.16 +3.5 77,659 + EX31_RS17630 0.16 +0.4 77,660 - EX31_RS17630 0.16 -0.0 77,660 - EX31_RS17630 0.16 +1.1 77,660 - EX31_RS17630 0.16 -2.9 77,704 + EX31_RS17630 0.21 +1.4 77,705 - EX31_RS17630 0.21 -1.7 77,707 + EX31_RS17630 0.21 +0.3 77,708 - EX31_RS17630 0.22 +1.1 77,708 - EX31_RS17630 0.22 -0.4 77,715 + EX31_RS17630 0.22 +0.8 77,719 + EX31_RS17630 0.23 +2.0 77,719 + EX31_RS17630 0.23 -1.7 77,719 + EX31_RS17630 0.23 +2.9 77,719 + EX31_RS17630 0.23 -2.0 77,720 - EX31_RS17630 0.23 -0.9 77,720 - EX31_RS17630 0.23 +0.6 77,720 - EX31_RS17630 0.23 -2.0 77,720 - EX31_RS17630 0.23 +0.3 77,720 - EX31_RS17630 0.23 -1.4 77,720 - EX31_RS17630 0.23 +2.2 77,720 - EX31_RS17630 0.23 -2.4 77,720 - EX31_RS17630 0.23 +3.0 77,720 - EX31_RS17630 0.23 +2.4 77,720 - EX31_RS17630 0.23 +2.5 77,720 - EX31_RS17630 0.23 -0.4 77,726 - EX31_RS17630 0.24 +3.0 77,740 + EX31_RS17630 0.25 +0.1 77,741 - EX31_RS17630 0.25 +4.0 77,741 - EX31_RS17630 0.25 -1.7 77,802 + EX31_RS17630 0.32 +0.6 77,803 - EX31_RS17630 0.32 +1.6 77,803 - EX31_RS17630 0.32 -1.2 77,803 - EX31_RS17630 0.32 -1.4 77,882 - EX31_RS17630 0.40 -2.0 77,895 + EX31_RS17630 0.42 -0.4 77,905 - EX31_RS17630 0.43 -0.4 77,946 + EX31_RS17630 0.47 -0.9 78,153 + EX31_RS17630 0.69 -2.2 78,153 + EX31_RS17630 0.69 +0.1 78,159 + EX31_RS17630 0.70 +0.1 78,165 + EX31_RS17630 0.70 +1.4
Or see this region's nucleotide sequence