Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25940 and EX31_RS25945 are separated by 459 nucleotides EX31_RS25945 and EX31_RS25950 are separated by 264 nucleotides EX31_RS25950 and EX31_RS25955 are separated by 219 nucleotides
EX31_RS25940: EX31_RS25940 - hypothetical protein, at 335 to 394
_RS25940
EX31_RS25945: EX31_RS25945 - hypothetical protein, at 854 to 1,315
_RS25945
EX31_RS25950: EX31_RS25950 - hypothetical protein, at 1,580 to 1,951
_RS25950
EX31_RS25955: EX31_RS25955 - hypothetical protein, at 2,171 to 2,785
_RS25955
Position (kb)
0
1
2 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 0.330 kb on + strand at 0.330 kb on + strand at 0.330 kb on + strand at 0.330 kb on + strand at 0.332 kb on + strand at 0.332 kb on + strand at 0.367 kb on + strand, within EX31_RS25940 at 0.450 kb on + strand at 0.450 kb on + strand at 0.948 kb on + strand, within EX31_RS25945 at 0.948 kb on + strand, within EX31_RS25945 at 1.076 kb on - strand, within EX31_RS25945 at 1.099 kb on + strand, within EX31_RS25945 at 1.209 kb on + strand, within EX31_RS25945 at 1.210 kb on - strand, within EX31_RS25945 at 1.247 kb on - strand, within EX31_RS25945 at 1.320 kb on + strand at 1.350 kb on + strand at 1.351 kb on - strand at 1.351 kb on - strand at 1.404 kb on + strand at 1.504 kb on - strand at 1.711 kb on + strand, within EX31_RS25950 at 1.790 kb on + strand, within EX31_RS25950 at 2.211 kb on - strand at 2.245 kb on + strand, within EX31_RS25955 at 2.246 kb on - strand, within EX31_RS25955 at 2.246 kb on - strand, within EX31_RS25955 at 2.246 kb on - strand, within EX31_RS25955 at 2.246 kb on - strand, within EX31_RS25955 at 2.254 kb on + strand, within EX31_RS25955 at 2.254 kb on + strand, within EX31_RS25955 at 2.258 kb on + strand, within EX31_RS25955 at 2.258 kb on + strand, within EX31_RS25955 at 2.258 kb on + strand, within EX31_RS25955 at 2.259 kb on - strand, within EX31_RS25955 at 2.267 kb on - strand, within EX31_RS25955
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 330 + +2.7 330 + +0.0 330 + -1.6 330 + +0.0 332 + -0.6 332 + +1.3 367 + EX31_RS25940 0.53 +2.2 450 + +0.7 450 + +0.7 948 + EX31_RS25945 0.20 +1.0 948 + EX31_RS25945 0.20 -0.6 1,076 - EX31_RS25945 0.48 +0.0 1,099 + EX31_RS25945 0.53 -1.8 1,209 + EX31_RS25945 0.77 -1.6 1,210 - EX31_RS25945 0.77 -1.8 1,247 - EX31_RS25945 0.85 +0.7 1,320 + +1.4 1,350 + -2.3 1,351 - +0.1 1,351 - -1.0 1,404 + +0.5 1,504 - +1.0 1,711 + EX31_RS25950 0.35 +2.6 1,790 + EX31_RS25950 0.56 +0.0 2,211 - -2.7 2,245 + EX31_RS25955 0.12 -2.0 2,246 - EX31_RS25955 0.12 +0.0 2,246 - EX31_RS25955 0.12 +0.0 2,246 - EX31_RS25955 0.12 +2.0 2,246 - EX31_RS25955 0.12 +1.4 2,254 + EX31_RS25955 0.13 +0.3 2,254 + EX31_RS25955 0.13 +0.7 2,258 + EX31_RS25955 0.14 -2.1 2,258 + EX31_RS25955 0.14 +0.0 2,258 + EX31_RS25955 0.14 -0.5 2,259 - EX31_RS25955 0.14 -1.0 2,267 - EX31_RS25955 0.16 +0.2
Or see this region's nucleotide sequence