Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24750 and EX31_RS24755 are separated by 495 nucleotides EX31_RS24755 and EX31_RS24760 are separated by 19 nucleotides EX31_RS24760 and EX31_RS24765 are separated by 406 nucleotides
EX31_RS24750: EX31_RS24750 - prolyl oligopeptidase family serine peptidase, at 720,161 to 722,200
_RS24750
EX31_RS24755: EX31_RS24755 - prolyl aminopeptidase, at 722,696 to 723,652
_RS24755
EX31_RS24760: EX31_RS24760 - DNA polymerase III subunit theta, at 723,672 to 723,902
_RS24760
EX31_RS24765: EX31_RS24765 - non-heme ferritin, at 724,309 to 724,815
_RS24765
Position (kb) 722
723
724 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 721.739 kb on + strand, within EX31_RS24750 at 721.922 kb on + strand, within EX31_RS24750 at 721.923 kb on - strand, within EX31_RS24750 at 721.926 kb on - strand, within EX31_RS24750 at 721.931 kb on + strand, within EX31_RS24750 at 721.931 kb on + strand, within EX31_RS24750 at 721.931 kb on + strand, within EX31_RS24750 at 721.931 kb on + strand, within EX31_RS24750 at 721.931 kb on + strand, within EX31_RS24750 at 721.932 kb on - strand, within EX31_RS24750 at 721.932 kb on - strand, within EX31_RS24750 at 721.932 kb on - strand, within EX31_RS24750 at 721.933 kb on + strand, within EX31_RS24750 at 721.933 kb on + strand, within EX31_RS24750 at 721.933 kb on + strand, within EX31_RS24750 at 721.933 kb on + strand, within EX31_RS24750 at 721.933 kb on + strand, within EX31_RS24750 at 721.933 kb on + strand, within EX31_RS24750 at 721.933 kb on + strand, within EX31_RS24750 at 721.933 kb on + strand, within EX31_RS24750 at 721.934 kb on - strand, within EX31_RS24750 at 721.934 kb on - strand, within EX31_RS24750 at 721.934 kb on - strand, within EX31_RS24750 at 721.934 kb on - strand, within EX31_RS24750 at 721.934 kb on - strand, within EX31_RS24750 at 721.934 kb on - strand, within EX31_RS24750 at 721.943 kb on + strand, within EX31_RS24750 at 721.953 kb on - strand, within EX31_RS24750 at 721.985 kb on - strand, within EX31_RS24750 at 722.065 kb on + strand at 722.095 kb on + strand at 722.096 kb on - strand at 722.096 kb on - strand at 722.096 kb on - strand at 722.165 kb on + strand at 722.165 kb on + strand at 722.166 kb on - strand at 722.166 kb on - strand at 722.198 kb on + strand at 722.199 kb on - strand at 722.202 kb on + strand at 722.202 kb on + strand at 722.203 kb on - strand at 722.222 kb on + strand at 722.223 kb on - strand at 722.223 kb on - strand at 722.298 kb on + strand at 722.299 kb on - strand at 722.299 kb on - strand at 722.299 kb on - strand at 722.304 kb on - strand at 722.413 kb on - strand at 722.418 kb on + strand at 722.419 kb on - strand at 722.419 kb on - strand at 722.419 kb on - strand at 722.419 kb on - strand at 722.419 kb on - strand at 722.432 kb on - strand at 722.458 kb on + strand at 722.458 kb on + strand at 722.458 kb on + strand at 722.462 kb on + strand at 722.463 kb on - strand at 722.470 kb on - strand at 722.470 kb on - strand at 722.470 kb on - strand at 722.568 kb on + strand at 722.572 kb on + strand at 722.606 kb on + strand at 722.608 kb on + strand at 722.608 kb on + strand at 722.609 kb on - strand at 722.609 kb on - strand at 722.642 kb on - strand at 722.651 kb on + strand at 722.651 kb on + strand at 722.651 kb on + strand at 722.651 kb on + strand at 722.651 kb on + strand at 722.651 kb on + strand at 722.651 kb on + strand at 722.651 kb on + strand at 722.651 kb on + strand at 722.652 kb on - strand at 722.652 kb on - strand at 722.652 kb on - strand at 722.652 kb on - strand at 722.652 kb on - strand at 722.652 kb on - strand at 722.652 kb on - strand at 722.652 kb on - strand at 722.667 kb on + strand at 722.681 kb on - strand at 722.715 kb on + strand at 722.716 kb on - strand at 722.716 kb on - strand at 722.717 kb on + strand at 722.717 kb on + strand at 722.735 kb on + strand at 722.736 kb on - strand at 722.817 kb on + strand, within EX31_RS24755 at 722.817 kb on + strand, within EX31_RS24755 at 722.818 kb on - strand, within EX31_RS24755 at 722.818 kb on - strand, within EX31_RS24755 at 722.885 kb on + strand, within EX31_RS24755 at 722.886 kb on - strand, within EX31_RS24755 at 722.953 kb on + strand, within EX31_RS24755 at 722.953 kb on + strand, within EX31_RS24755 at 722.953 kb on + strand, within EX31_RS24755 at 722.953 kb on + strand, within EX31_RS24755 at 723.143 kb on + strand, within EX31_RS24755 at 723.187 kb on + strand, within EX31_RS24755 at 723.187 kb on + strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.188 kb on - strand, within EX31_RS24755 at 723.217 kb on + strand, within EX31_RS24755 at 723.457 kb on + strand, within EX31_RS24755 at 723.500 kb on - strand, within EX31_RS24755 at 723.691 kb on + strand at 723.691 kb on + strand at 723.691 kb on + strand at 723.692 kb on - strand at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.751 kb on + strand, within EX31_RS24760 at 723.751 kb on + strand, within EX31_RS24760 at 723.752 kb on - strand, within EX31_RS24760 at 723.811 kb on + strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.858 kb on - strand, within EX31_RS24760 at 723.858 kb on - strand, within EX31_RS24760 at 723.902 kb on + strand at 723.937 kb on - strand at 723.937 kb on - strand at 723.978 kb on + strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 724.012 kb on + strand at 724.013 kb on - strand at 724.053 kb on - strand at 724.076 kb on + strand at 724.119 kb on + strand at 724.229 kb on - strand at 724.229 kb on - strand at 724.285 kb on + strand at 724.338 kb on + strand at 724.376 kb on + strand, within EX31_RS24765 at 724.486 kb on + strand, within EX31_RS24765 at 724.579 kb on + strand, within EX31_RS24765 at 724.580 kb on - strand, within EX31_RS24765
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 721,739 + EX31_RS24750 0.77 +0.2 721,922 + EX31_RS24750 0.86 -0.4 721,923 - EX31_RS24750 0.86 +1.2 721,926 - EX31_RS24750 0.87 +2.9 721,931 + EX31_RS24750 0.87 +1.4 721,931 + EX31_RS24750 0.87 -1.4 721,931 + EX31_RS24750 0.87 +0.2 721,931 + EX31_RS24750 0.87 +1.2 721,931 + EX31_RS24750 0.87 +1.2 721,932 - EX31_RS24750 0.87 -1.4 721,932 - EX31_RS24750 0.87 +3.4 721,932 - EX31_RS24750 0.87 -1.4 721,933 + EX31_RS24750 0.87 +1.2 721,933 + EX31_RS24750 0.87 -0.8 721,933 + EX31_RS24750 0.87 +1.2 721,933 + EX31_RS24750 0.87 +2.2 721,933 + EX31_RS24750 0.87 +0.2 721,933 + EX31_RS24750 0.87 +1.2 721,933 + EX31_RS24750 0.87 -2.4 721,933 + EX31_RS24750 0.87 +0.8 721,934 - EX31_RS24750 0.87 -0.4 721,934 - EX31_RS24750 0.87 +4.4 721,934 - EX31_RS24750 0.87 +1.2 721,934 - EX31_RS24750 0.87 -1.2 721,934 - EX31_RS24750 0.87 -1.8 721,934 - EX31_RS24750 0.87 +0.2 721,943 + EX31_RS24750 0.87 -0.8 721,953 - EX31_RS24750 0.88 +1.2 721,985 - EX31_RS24750 0.89 +0.2 722,065 + +0.2 722,095 + -0.4 722,096 - -1.8 722,096 - +1.8 722,096 - +0.4 722,165 + +1.0 722,165 + -0.8 722,166 - +0.6 722,166 - +0.2 722,198 + +0.2 722,199 - +2.7 722,202 + +0.6 722,202 + +0.2 722,203 - -0.3 722,222 + -1.1 722,223 - -0.2 722,223 - +2.0 722,298 + -1.8 722,299 - +0.5 722,299 - +1.6 722,299 - +1.7 722,304 - +0.6 722,413 - -1.7 722,418 + +2.2 722,419 - +0.9 722,419 - -0.1 722,419 - -0.7 722,419 - -3.1 722,419 - -2.6 722,432 - +1.6 722,458 + +1.2 722,458 + +1.8 722,458 + +1.0 722,462 + -0.4 722,463 - +0.4 722,470 - +0.9 722,470 - -1.2 722,470 - +0.2 722,568 + +1.2 722,572 + +1.6 722,606 + -2.1 722,608 + +1.4 722,608 + +0.2 722,609 - +3.3 722,609 - +0.2 722,642 - -0.4 722,651 + -1.8 722,651 + -1.1 722,651 + +0.6 722,651 + +1.9 722,651 + +0.7 722,651 + +2.7 722,651 + +1.2 722,651 + +1.0 722,651 + -1.8 722,652 - +2.0 722,652 - -2.6 722,652 - -2.8 722,652 - +0.2 722,652 - -1.1 722,652 - -1.1 722,652 - -1.4 722,652 - +0.2 722,667 + +2.2 722,681 - -0.4 722,715 + -0.7 722,716 - +0.2 722,716 - +2.1 722,717 + +1.5 722,717 + -1.8 722,735 + -0.8 722,736 - -0.8 722,817 + EX31_RS24755 0.13 -2.6 722,817 + EX31_RS24755 0.13 -1.4 722,818 - EX31_RS24755 0.13 +2.2 722,818 - EX31_RS24755 0.13 +0.2 722,885 + EX31_RS24755 0.20 +0.2 722,886 - EX31_RS24755 0.20 +0.2 722,953 + EX31_RS24755 0.27 -1.1 722,953 + EX31_RS24755 0.27 -1.1 722,953 + EX31_RS24755 0.27 +0.7 722,953 + EX31_RS24755 0.27 +0.2 723,143 + EX31_RS24755 0.47 -1.2 723,187 + EX31_RS24755 0.51 -0.8 723,187 + EX31_RS24755 0.51 -1.4 723,188 - EX31_RS24755 0.51 -0.8 723,188 - EX31_RS24755 0.51 -1.4 723,188 - EX31_RS24755 0.51 -1.1 723,188 - EX31_RS24755 0.51 -1.8 723,188 - EX31_RS24755 0.51 -1.1 723,188 - EX31_RS24755 0.51 +0.9 723,217 + EX31_RS24755 0.54 -0.4 723,457 + EX31_RS24755 0.80 +0.2 723,500 - EX31_RS24755 0.84 -0.4 723,691 + +0.4 723,691 + -0.8 723,691 + -0.4 723,692 - +1.2 723,710 + EX31_RS24760 0.16 +2.0 723,710 + EX31_RS24760 0.16 -2.6 723,710 + EX31_RS24760 0.16 -2.5 723,710 + EX31_RS24760 0.16 -1.9 723,711 - EX31_RS24760 0.17 +1.2 723,711 - EX31_RS24760 0.17 +1.0 723,711 - EX31_RS24760 0.17 +0.0 723,711 - EX31_RS24760 0.17 +0.9 723,711 - EX31_RS24760 0.17 +1.1 723,711 - EX31_RS24760 0.17 -1.1 723,711 - EX31_RS24760 0.17 -1.4 723,711 - EX31_RS24760 0.17 +0.9 723,711 - EX31_RS24760 0.17 +3.0 723,711 - EX31_RS24760 0.17 -0.4 723,711 - EX31_RS24760 0.17 +0.5 723,751 + EX31_RS24760 0.34 -0.4 723,751 + EX31_RS24760 0.34 -0.3 723,752 - EX31_RS24760 0.35 +2.1 723,811 + EX31_RS24760 0.60 +0.2 723,812 - EX31_RS24760 0.61 -0.5 723,812 - EX31_RS24760 0.61 +0.2 723,812 - EX31_RS24760 0.61 -1.9 723,812 - EX31_RS24760 0.61 +1.0 723,812 - EX31_RS24760 0.61 +0.9 723,858 - EX31_RS24760 0.81 -0.4 723,858 - EX31_RS24760 0.81 -0.8 723,902 + -1.1 723,937 - -2.4 723,937 - +0.2 723,978 + +1.4 723,979 - +1.6 723,979 - -2.1 723,979 - -2.2 723,979 - +0.2 724,012 + +0.1 724,013 - -1.1 724,053 - +1.8 724,076 + +2.8 724,119 + -2.5 724,229 - -0.2 724,229 - -1.9 724,285 + +0.6 724,338 + +0.2 724,376 + EX31_RS24765 0.13 +2.2 724,486 + EX31_RS24765 0.35 +1.3 724,579 + EX31_RS24765 0.53 +1.7 724,580 - EX31_RS24765 0.53 -0.8
Or see this region's nucleotide sequence