Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24590 and EX31_RS24595 are separated by 340 nucleotides EX31_RS24595 and EX31_RS24600 are separated by 152 nucleotides EX31_RS24600 and EX31_RS24605 are separated by 294 nucleotides
EX31_RS24590: EX31_RS24590 - NADP-dependent isocitrate dehydrogenase, at 688,434 to 689,687
_RS24590
EX31_RS24595: EX31_RS24595 - membrane protein, at 690,028 to 690,519
_RS24595
EX31_RS24600: EX31_RS24600 - hypothetical protein, at 690,672 to 690,905
_RS24600
EX31_RS24605: EX31_RS24605 - hypothetical protein, at 691,200 to 691,487
_RS24605
Position (kb) 690
691 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 689.685 kb on + strand at 689.685 kb on + strand at 689.810 kb on - strand at 689.921 kb on - strand at 689.928 kb on - strand at 689.989 kb on - strand at 689.994 kb on + strand at 690.034 kb on - strand at 690.124 kb on - strand, within EX31_RS24595 at 690.153 kb on + strand, within EX31_RS24595 at 690.154 kb on - strand, within EX31_RS24595 at 690.195 kb on + strand, within EX31_RS24595 at 690.234 kb on + strand, within EX31_RS24595 at 690.259 kb on - strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.260 kb on + strand, within EX31_RS24595 at 690.261 kb on - strand, within EX31_RS24595 at 690.261 kb on - strand, within EX31_RS24595 at 690.291 kb on + strand, within EX31_RS24595 at 690.292 kb on - strand, within EX31_RS24595 at 690.295 kb on + strand, within EX31_RS24595 at 690.431 kb on - strand, within EX31_RS24595 at 690.458 kb on + strand, within EX31_RS24595 at 690.459 kb on - strand, within EX31_RS24595 at 690.510 kb on - strand at 690.518 kb on - strand at 690.528 kb on + strand at 690.539 kb on + strand at 690.552 kb on - strand at 690.577 kb on - strand at 690.637 kb on + strand at 690.701 kb on + strand, within EX31_RS24600 at 690.728 kb on + strand, within EX31_RS24600 at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.905 kb on + strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.906 kb on - strand at 690.928 kb on + strand at 690.929 kb on - strand at 690.959 kb on + strand at 690.959 kb on + strand at 690.960 kb on - strand at 690.960 kb on - strand at 690.967 kb on + strand at 690.990 kb on + strand at 691.034 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.082 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.084 kb on + strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.085 kb on - strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.086 kb on + strand at 691.087 kb on - strand at 691.087 kb on - strand at 691.087 kb on - strand at 691.087 kb on - strand at 691.121 kb on + strand at 691.122 kb on - strand at 691.127 kb on + strand at 691.127 kb on + strand at 691.128 kb on - strand at 691.199 kb on + strand at 691.200 kb on - strand at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.275 kb on + strand, within EX31_RS24605 at 691.276 kb on - strand, within EX31_RS24605 at 691.312 kb on + strand, within EX31_RS24605 at 691.384 kb on - strand, within EX31_RS24605 at 691.394 kb on + strand, within EX31_RS24605 at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.481 kb on + strand at 691.482 kb on - strand at 691.482 kb on - strand at 691.482 kb on - strand at 691.482 kb on - strand at 691.482 kb on - strand at 691.485 kb on + strand at 691.506 kb on + strand at 691.506 kb on + strand at 691.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 689,685 + -1.4 689,685 + +0.8 689,810 - +0.7 689,921 - +0.8 689,928 - -0.4 689,989 - +3.0 689,994 + -1.1 690,034 - +1.7 690,124 - EX31_RS24595 0.20 +2.8 690,153 + EX31_RS24595 0.25 -1.4 690,154 - EX31_RS24595 0.26 +0.2 690,195 + EX31_RS24595 0.34 -1.1 690,234 + EX31_RS24595 0.42 -1.1 690,259 - EX31_RS24595 0.47 -1.4 690,260 + EX31_RS24595 0.47 +1.9 690,260 + EX31_RS24595 0.47 +2.5 690,260 + EX31_RS24595 0.47 -0.4 690,260 + EX31_RS24595 0.47 +0.6 690,260 + EX31_RS24595 0.47 -0.4 690,260 + EX31_RS24595 0.47 -0.8 690,261 - EX31_RS24595 0.47 -0.4 690,261 - EX31_RS24595 0.47 +0.2 690,291 + EX31_RS24595 0.53 -2.6 690,292 - EX31_RS24595 0.54 -1.6 690,295 + EX31_RS24595 0.54 +1.7 690,431 - EX31_RS24595 0.82 -1.9 690,458 + EX31_RS24595 0.87 -1.1 690,459 - EX31_RS24595 0.88 -1.1 690,510 - +1.2 690,518 - +1.0 690,528 + -1.4 690,539 + +0.0 690,552 - +0.2 690,577 - -1.1 690,637 + -1.8 690,701 + EX31_RS24600 0.12 -1.9 690,728 + EX31_RS24600 0.24 -1.9 690,905 + +0.6 690,905 + -1.6 690,905 + +2.5 690,905 + -0.4 690,905 + +1.0 690,905 + -1.6 690,905 + -1.1 690,905 + +1.8 690,905 + -0.3 690,906 - +0.3 690,906 - -2.1 690,906 - +0.2 690,906 - -1.1 690,906 - +2.7 690,906 - -1.1 690,906 - +1.0 690,928 + +1.2 690,929 - +0.0 690,959 + -1.1 690,959 + +0.2 690,960 - -2.2 690,960 - +3.8 690,967 + +0.1 690,990 + -1.9 691,034 + +0.1 691,082 + +0.5 691,082 + +4.2 691,082 + +3.0 691,082 + -0.4 691,082 + +1.2 691,082 + +1.6 691,082 + -0.8 691,084 + +1.6 691,084 + -2.1 691,084 + -2.1 691,084 + +1.2 691,084 + -1.4 691,084 + -1.9 691,085 - +1.0 691,085 - -1.8 691,085 - +0.2 691,085 - +1.1 691,085 - +0.9 691,085 - +2.8 691,086 + +4.4 691,086 + -0.4 691,086 + +0.2 691,086 + +0.2 691,086 + -0.4 691,086 + +0.9 691,087 - -1.1 691,087 - +2.0 691,087 - +0.9 691,087 - +2.9 691,121 + -1.4 691,122 - -1.4 691,127 + +1.1 691,127 + +0.7 691,128 - +2.2 691,199 + +4.4 691,200 - +1.2 691,275 + EX31_RS24605 0.26 -2.6 691,275 + EX31_RS24605 0.26 +2.1 691,275 + EX31_RS24605 0.26 +0.2 691,275 + EX31_RS24605 0.26 -1.4 691,275 + EX31_RS24605 0.26 -0.4 691,275 + EX31_RS24605 0.26 -1.1 691,276 - EX31_RS24605 0.26 -1.1 691,312 + EX31_RS24605 0.39 -1.1 691,384 - EX31_RS24605 0.64 -2.1 691,394 + EX31_RS24605 0.67 +1.2 691,481 + -0.4 691,481 + +1.6 691,481 + +1.2 691,481 + -0.4 691,481 + +1.5 691,481 + +1.0 691,481 + -0.4 691,481 + -1.6 691,482 - +1.5 691,482 - -0.4 691,482 - +2.6 691,482 - +2.0 691,482 - +1.4 691,485 + +0.2 691,506 + +0.2 691,506 + +0.4 691,507 - +3.4
Or see this region's nucleotide sequence