Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24105 and EX31_RS24110 are separated by 281 nucleotides EX31_RS24110 and EX31_RS24115 are separated by 371 nucleotides EX31_RS24115 and EX31_RS24120 are separated by 255 nucleotides
EX31_RS24105: EX31_RS24105 - hypothetical protein, at 589,474 to 594,327
_RS24105
EX31_RS24110: EX31_RS24110 - D-serine/D-alanine/glycine transporter, at 594,609 to 596,003
_RS24110
EX31_RS24115: EX31_RS24115 - tRNA-Lys, at 596,375 to 596,450
_RS24115
EX31_RS24120: EX31_RS24120 - hypothetical protein, at 596,706 to 596,954
_RS24120
Position (kb) 594
595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 593.622 kb on - strand, within EX31_RS24105 at 593.648 kb on + strand, within EX31_RS24105 at 593.715 kb on + strand, within EX31_RS24105 at 593.715 kb on + strand, within EX31_RS24105 at 593.715 kb on + strand, within EX31_RS24105 at 593.716 kb on - strand, within EX31_RS24105 at 593.716 kb on - strand, within EX31_RS24105 at 593.724 kb on - strand, within EX31_RS24105 at 593.782 kb on + strand, within EX31_RS24105 at 593.782 kb on + strand, within EX31_RS24105 at 593.914 kb on + strand at 593.915 kb on - strand at 593.949 kb on + strand at 593.950 kb on - strand at 594.028 kb on - strand at 594.030 kb on - strand at 594.036 kb on + strand at 594.085 kb on + strand at 594.085 kb on + strand at 594.224 kb on + strand at 594.330 kb on + strand at 594.559 kb on - strand at 594.559 kb on - strand at 594.597 kb on - strand at 594.598 kb on + strand at 594.599 kb on - strand at 594.711 kb on + strand at 594.738 kb on - strand at 594.823 kb on + strand, within EX31_RS24110 at 594.823 kb on + strand, within EX31_RS24110 at 594.824 kb on - strand, within EX31_RS24110 at 594.824 kb on - strand, within EX31_RS24110 at 594.975 kb on + strand, within EX31_RS24110 at 595.059 kb on + strand, within EX31_RS24110 at 595.059 kb on + strand, within EX31_RS24110 at 595.109 kb on + strand, within EX31_RS24110 at 595.140 kb on + strand, within EX31_RS24110 at 595.140 kb on + strand, within EX31_RS24110 at 595.141 kb on - strand, within EX31_RS24110 at 595.203 kb on - strand, within EX31_RS24110 at 595.203 kb on - strand, within EX31_RS24110 at 595.203 kb on - strand, within EX31_RS24110 at 595.221 kb on + strand, within EX31_RS24110 at 595.221 kb on + strand, within EX31_RS24110 at 595.222 kb on - strand, within EX31_RS24110 at 595.222 kb on - strand, within EX31_RS24110 at 595.222 kb on - strand, within EX31_RS24110 at 595.225 kb on + strand, within EX31_RS24110 at 595.225 kb on + strand, within EX31_RS24110 at 595.225 kb on + strand, within EX31_RS24110 at 595.225 kb on + strand, within EX31_RS24110 at 595.225 kb on + strand, within EX31_RS24110 at 595.225 kb on + strand, within EX31_RS24110 at 595.226 kb on - strand, within EX31_RS24110 at 595.226 kb on - strand, within EX31_RS24110 at 595.226 kb on - strand, within EX31_RS24110 at 595.226 kb on - strand, within EX31_RS24110 at 595.345 kb on - strand, within EX31_RS24110 at 595.345 kb on - strand, within EX31_RS24110 at 595.808 kb on + strand, within EX31_RS24110 at 595.808 kb on + strand, within EX31_RS24110 at 595.826 kb on - strand, within EX31_RS24110 at 595.826 kb on - strand, within EX31_RS24110 at 595.877 kb on + strand at 595.923 kb on - strand at 596.008 kb on + strand at 596.064 kb on - strand at 596.135 kb on - strand at 596.137 kb on + strand at 596.137 kb on + strand at 596.138 kb on - strand at 596.140 kb on + strand at 596.141 kb on - strand at 596.141 kb on - strand at 596.141 kb on - strand at 596.141 kb on - strand at 596.141 kb on - strand at 596.146 kb on + strand at 596.146 kb on + strand at 596.147 kb on - strand at 596.147 kb on - strand at 596.147 kb on - strand at 596.158 kb on + strand at 596.158 kb on + strand at 596.159 kb on - strand at 596.159 kb on - strand at 596.162 kb on - strand at 596.164 kb on - strand at 596.230 kb on + strand at 596.230 kb on + strand at 596.231 kb on - strand at 596.234 kb on + strand at 596.263 kb on + strand at 596.298 kb on - strand at 596.361 kb on + strand at 596.382 kb on + strand at 596.382 kb on + strand at 596.410 kb on + strand, within EX31_RS24115 at 596.410 kb on + strand, within EX31_RS24115 at 596.460 kb on + strand at 596.472 kb on + strand at 596.473 kb on - strand at 596.489 kb on + strand at 596.489 kb on + strand at 596.528 kb on - strand at 596.537 kb on + strand at 596.540 kb on + strand at 596.540 kb on + strand at 596.585 kb on + strand at 596.620 kb on + strand at 596.620 kb on + strand at 596.621 kb on - strand at 596.622 kb on + strand at 596.622 kb on + strand at 596.622 kb on + strand at 596.623 kb on - strand at 596.623 kb on - strand at 596.654 kb on + strand at 596.654 kb on + strand at 596.654 kb on + strand at 596.655 kb on - strand at 596.690 kb on + strand at 596.691 kb on - strand at 596.691 kb on - strand at 596.691 kb on - strand at 596.691 kb on - strand at 596.691 kb on - strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.711 kb on - strand at 596.711 kb on - strand at 596.711 kb on - strand at 596.711 kb on - strand at 596.711 kb on - strand at 596.714 kb on + strand at 596.714 kb on + strand at 596.714 kb on + strand at 596.714 kb on + strand at 596.714 kb on + strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.724 kb on - strand at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.802 kb on - strand, within EX31_RS24120 at 596.908 kb on + strand, within EX31_RS24120 at 596.908 kb on + strand, within EX31_RS24120 at 596.909 kb on - strand, within EX31_RS24120 at 596.916 kb on - strand, within EX31_RS24120 at 596.938 kb on - strand at 596.944 kb on + strand at 596.944 kb on + strand at 596.945 kb on - strand at 596.945 kb on - strand at 596.950 kb on + strand at 596.950 kb on + strand at 596.950 kb on + strand at 596.950 kb on + strand at 596.950 kb on + strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.955 kb on - strand at 596.955 kb on - strand at 596.955 kb on - strand at 596.955 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 593,622 - EX31_RS24105 0.85 -1.4 593,648 + EX31_RS24105 0.86 -2.0 593,715 + EX31_RS24105 0.87 +0.6 593,715 + EX31_RS24105 0.87 -1.1 593,715 + EX31_RS24105 0.87 -1.6 593,716 - EX31_RS24105 0.87 -2.1 593,716 - EX31_RS24105 0.87 +1.8 593,724 - EX31_RS24105 0.88 -1.6 593,782 + EX31_RS24105 0.89 +0.2 593,782 + EX31_RS24105 0.89 -1.8 593,914 + -0.2 593,915 - +0.5 593,949 + -2.1 593,950 - -2.8 594,028 - +0.8 594,030 - +2.8 594,036 + -1.8 594,085 + -1.1 594,085 + +0.2 594,224 + -2.5 594,330 + +3.7 594,559 - -1.4 594,559 - -0.4 594,597 - -1.4 594,598 + -2.1 594,599 - -0.8 594,711 + -0.4 594,738 - -1.6 594,823 + EX31_RS24110 0.15 -2.0 594,823 + EX31_RS24110 0.15 -2.0 594,824 - EX31_RS24110 0.15 +1.2 594,824 - EX31_RS24110 0.15 -0.2 594,975 + EX31_RS24110 0.26 +2.7 595,059 + EX31_RS24110 0.32 -0.8 595,059 + EX31_RS24110 0.32 +2.6 595,109 + EX31_RS24110 0.36 -0.8 595,140 + EX31_RS24110 0.38 +2.5 595,140 + EX31_RS24110 0.38 -0.4 595,141 - EX31_RS24110 0.38 +1.2 595,203 - EX31_RS24110 0.43 -1.6 595,203 - EX31_RS24110 0.43 +1.4 595,203 - EX31_RS24110 0.43 -1.8 595,221 + EX31_RS24110 0.44 -1.4 595,221 + EX31_RS24110 0.44 -0.0 595,222 - EX31_RS24110 0.44 +1.2 595,222 - EX31_RS24110 0.44 -1.1 595,222 - EX31_RS24110 0.44 -1.8 595,225 + EX31_RS24110 0.44 +1.2 595,225 + EX31_RS24110 0.44 +0.2 595,225 + EX31_RS24110 0.44 -0.8 595,225 + EX31_RS24110 0.44 -2.5 595,225 + EX31_RS24110 0.44 -0.4 595,225 + EX31_RS24110 0.44 -0.4 595,226 - EX31_RS24110 0.44 -0.4 595,226 - EX31_RS24110 0.44 -0.8 595,226 - EX31_RS24110 0.44 -1.2 595,226 - EX31_RS24110 0.44 -1.4 595,345 - EX31_RS24110 0.53 -2.0 595,345 - EX31_RS24110 0.53 -0.4 595,808 + EX31_RS24110 0.86 -2.2 595,808 + EX31_RS24110 0.86 -2.0 595,826 - EX31_RS24110 0.87 -2.7 595,826 - EX31_RS24110 0.87 -1.8 595,877 + +0.2 595,923 - -0.4 596,008 + -2.2 596,064 - -1.1 596,135 - +1.9 596,137 + +1.0 596,137 + +0.9 596,138 - -2.5 596,140 + -1.7 596,141 - +0.2 596,141 - -2.0 596,141 - -0.8 596,141 - -1.1 596,141 - +1.4 596,146 + +2.3 596,146 + -1.4 596,147 - +1.5 596,147 - -0.4 596,147 - -1.8 596,158 + -0.4 596,158 + +0.9 596,159 - -1.8 596,159 - +4.4 596,162 - -2.6 596,164 - -2.2 596,230 + +2.4 596,230 + -0.8 596,231 - -2.2 596,234 + +1.5 596,263 + +3.2 596,298 - +0.2 596,361 + -1.4 596,382 + +1.4 596,382 + +0.6 596,410 + EX31_RS24115 0.46 +0.1 596,410 + EX31_RS24115 0.46 -2.5 596,460 + -0.4 596,472 + -0.1 596,473 - +1.2 596,489 + -1.0 596,489 + +2.2 596,528 - -0.8 596,537 + -0.4 596,540 + +0.3 596,540 + -0.8 596,585 + +1.2 596,620 + +1.2 596,620 + +0.4 596,621 - -1.1 596,622 + -0.8 596,622 + +0.8 596,622 + +0.2 596,623 - +2.9 596,623 - -1.6 596,654 + -1.4 596,654 + +0.2 596,654 + +1.6 596,655 - +2.0 596,690 + -2.1 596,691 - +0.1 596,691 - +1.2 596,691 - +0.8 596,691 - -2.3 596,691 - +0.2 596,710 + +0.2 596,710 + -1.6 596,710 + -1.7 596,710 + -1.3 596,710 + -1.1 596,710 + -2.3 596,710 + -1.6 596,711 - -0.4 596,711 - +1.3 596,711 - +0.7 596,711 - -0.4 596,711 - +0.1 596,714 + -0.2 596,714 + +0.7 596,714 + -0.8 596,714 + -2.0 596,714 + +1.0 596,715 - +2.1 596,715 - +4.2 596,715 - +2.8 596,715 - +0.8 596,715 - +2.3 596,715 - +1.5 596,715 - -2.0 596,724 - -0.8 596,801 + EX31_RS24120 0.38 -2.1 596,801 + EX31_RS24120 0.38 +1.2 596,801 + EX31_RS24120 0.38 -0.1 596,801 + EX31_RS24120 0.38 +2.0 596,801 + EX31_RS24120 0.38 -1.1 596,801 + EX31_RS24120 0.38 +3.3 596,802 - EX31_RS24120 0.39 +1.2 596,908 + EX31_RS24120 0.81 +1.0 596,908 + EX31_RS24120 0.81 +2.9 596,909 - EX31_RS24120 0.82 -0.4 596,916 - EX31_RS24120 0.84 +1.1 596,938 - +0.9 596,944 + +0.8 596,944 + -0.4 596,945 - -0.4 596,945 - +0.0 596,950 + -1.1 596,950 + -1.8 596,950 + +1.5 596,950 + +2.1 596,950 + -2.8 596,951 - +1.1 596,951 - -1.1 596,951 - +1.5 596,951 - -1.8 596,951 - -2.1 596,951 - +0.2 596,951 - +0.8 596,951 - +0.9 596,951 - -0.4 596,951 - -1.1 596,951 - -1.4 596,951 - -2.5 596,951 - -0.8 596,951 - -1.1 596,951 - -1.8 596,955 - -3.1 596,955 - -0.8 596,955 - -1.4 596,955 - -2.0
Or see this region's nucleotide sequence