Strain Fitness in Rahnella sp. WP5 around EX31_RS23450

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23445 and EX31_RS23450 are separated by 92 nucleotidesEX31_RS23450 and EX31_RS23455 overlap by 1 nucleotides EX31_RS23445: EX31_RS23445 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 457,230 to 458,459 _RS23445 EX31_RS23450: EX31_RS23450 - ADP-forming succinate--CoA ligase subunit beta, at 458,552 to 459,718 _RS23450 EX31_RS23455: EX31_RS23455 - succinate--CoA ligase subunit alpha, at 459,718 to 460,590 _RS23455 Position (kb) 458 459 460Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 458.346 kb on + strandat 458.346 kb on + strandat 458.457 kb on + strandat 458.457 kb on + strandat 458.458 kb on - strandat 458.534 kb on - strandat 458.802 kb on - strand, within EX31_RS23450at 458.929 kb on + strand, within EX31_RS23450at 458.929 kb on + strand, within EX31_RS23450at 458.929 kb on + strand, within EX31_RS23450at 458.930 kb on - strand, within EX31_RS23450at 459.305 kb on + strand, within EX31_RS23450at 459.305 kb on + strand, within EX31_RS23450at 459.306 kb on - strand, within EX31_RS23450at 459.306 kb on - strand, within EX31_RS23450at 459.604 kb on + strandat 459.750 kb on + strandat 459.750 kb on + strandat 459.899 kb on + strand, within EX31_RS23455at 459.906 kb on + strand, within EX31_RS23455at 459.932 kb on - strand, within EX31_RS23455at 460.002 kb on + strand, within EX31_RS23455at 460.098 kb on + strand, within EX31_RS23455at 460.192 kb on + strand, within EX31_RS23455at 460.193 kb on - strand, within EX31_RS23455at 460.236 kb on + strand, within EX31_RS23455at 460.275 kb on + strand, within EX31_RS23455at 460.378 kb on + strand, within EX31_RS23455at 460.378 kb on + strand, within EX31_RS23455at 460.414 kb on + strand, within EX31_RS23455at 460.414 kb on + strand, within EX31_RS23455at 460.449 kb on + strand, within EX31_RS23455at 460.449 kb on + strand, within EX31_RS23455at 460.592 kb on + strandat 460.592 kb on + strandat 460.592 kb on + strandat 460.592 kb on + strandat 460.592 kb on + strandat 460.593 kb on - strandat 460.593 kb on - strandat 460.595 kb on + strandat 460.618 kb on + strandat 460.641 kb on - strandat 460.641 kb on - strandat 460.644 kb on + strandat 460.694 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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458,346 + +3.4
458,346 + +2.2
458,457 + -1.6
458,457 + +0.7
458,458 - +1.5
458,534 - +2.0
458,802 - EX31_RS23450 0.21 +0.2
458,929 + EX31_RS23450 0.32 +5.1
458,929 + EX31_RS23450 0.32 +2.1
458,929 + EX31_RS23450 0.32 +0.9
458,930 - EX31_RS23450 0.32 -0.3
459,305 + EX31_RS23450 0.65 -0.7
459,305 + EX31_RS23450 0.65 -0.3
459,306 - EX31_RS23450 0.65 +0.2
459,306 - EX31_RS23450 0.65 -2.1
459,604 + +0.8
459,750 + -0.8
459,750 + +0.2
459,899 + EX31_RS23455 0.21 -0.8
459,906 + EX31_RS23455 0.22 +0.7
459,932 - EX31_RS23455 0.25 +1.2
460,002 + EX31_RS23455 0.33 +1.8
460,098 + EX31_RS23455 0.44 -0.8
460,192 + EX31_RS23455 0.54 +0.2
460,193 - EX31_RS23455 0.54 -0.8
460,236 + EX31_RS23455 0.59 -0.3
460,275 + EX31_RS23455 0.64 +1.2
460,378 + EX31_RS23455 0.76 -0.8
460,378 + EX31_RS23455 0.76 +1.2
460,414 + EX31_RS23455 0.80 +1.2
460,414 + EX31_RS23455 0.80 +1.2
460,449 + EX31_RS23455 0.84 +0.6
460,449 + EX31_RS23455 0.84 -1.1
460,592 + -0.2
460,592 + -0.3
460,592 + +1.5
460,592 + -0.9
460,592 + +0.9
460,593 - +4.5
460,593 - -1.3
460,595 + +0.4
460,618 + -1.1
460,641 - -2.1
460,641 - -1.3
460,644 + -0.3
460,694 + -1.3

Or see this region's nucleotide sequence