Strain Fitness in Rahnella sp. WP5 around EX31_RS23430

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23420 and EX31_RS23425 overlap by 7 nucleotidesEX31_RS23425 and EX31_RS23430 are separated by 3 nucleotidesEX31_RS23430 and EX31_RS23435 are separated by 19 nucleotides EX31_RS23420: EX31_RS23420 - succinate dehydrogenase cytochrome b556 subunit, at 450,739 to 451,128 _RS23420 EX31_RS23425: EX31_RS23425 - succinate dehydrogenase membrane anchor subunit, at 451,122 to 451,469 _RS23425 EX31_RS23430: EX31_RS23430 - succinate dehydrogenase flavoprotein subunit, at 451,473 to 453,239 _RS23430 EX31_RS23435: EX31_RS23435 - succinate dehydrogenase iron-sulfur subunit, at 453,259 to 453,975 _RS23435 Position (kb) 451 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 450.484 kb on + strandat 450.485 kb on - strandat 450.535 kb on + strandat 450.562 kb on + strandat 450.609 kb on + strandat 450.609 kb on + strandat 450.609 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.703 kb on - strandat 450.824 kb on + strand, within EX31_RS23420at 450.825 kb on - strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.936 kb on + strand, within EX31_RS23420at 450.936 kb on + strand, within EX31_RS23420at 450.936 kb on + strand, within EX31_RS23420at 450.985 kb on + strand, within EX31_RS23420at 451.004 kb on + strand, within EX31_RS23420at 451.126 kb on + strandat 451.151 kb on + strandat 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.208 kb on + strand, within EX31_RS23425at 451.208 kb on + strand, within EX31_RS23425at 451.209 kb on - strand, within EX31_RS23425at 451.217 kb on + strand, within EX31_RS23425at 451.217 kb on + strand, within EX31_RS23425at 451.217 kb on + strand, within EX31_RS23425at 451.297 kb on + strand, within EX31_RS23425at 451.297 kb on + strand, within EX31_RS23425at 451.368 kb on + strand, within EX31_RS23425at 451.431 kb on + strand, within EX31_RS23425at 451.431 kb on + strand, within EX31_RS23425at 451.435 kb on + strandat 451.435 kb on + strandat 451.440 kb on + strandat 451.467 kb on + strandat 451.467 kb on + strandat 451.467 kb on + strandat 451.467 kb on + strandat 451.607 kb on + strandat 451.680 kb on + strand, within EX31_RS23430at 451.680 kb on + strand, within EX31_RS23430at 451.680 kb on + strand, within EX31_RS23430at 451.680 kb on + strand, within EX31_RS23430at 451.680 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.705 kb on - strand, within EX31_RS23430at 451.706 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.732 kb on - strand, within EX31_RS23430at 451.732 kb on - strand, within EX31_RS23430at 451.732 kb on - strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.815 kb on + strand, within EX31_RS23430at 451.815 kb on + strand, within EX31_RS23430at 451.816 kb on - strand, within EX31_RS23430at 451.871 kb on + strand, within EX31_RS23430at 451.920 kb on + strand, within EX31_RS23430at 452.046 kb on + strand, within EX31_RS23430at 452.123 kb on + strand, within EX31_RS23430at 452.123 kb on + strand, within EX31_RS23430at 452.351 kb on + strand, within EX31_RS23430at 452.429 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.536 kb on - strand, within EX31_RS23430at 452.738 kb on + strand, within EX31_RS23430at 452.788 kb on + strand, within EX31_RS23430at 452.788 kb on + strand, within EX31_RS23430at 452.975 kb on + strand, within EX31_RS23430at 452.975 kb on + strand, within EX31_RS23430at 452.976 kb on - strand, within EX31_RS23430at 453.066 kb on + strandat 453.147 kb on + strandat 453.147 kb on + strandat 453.147 kb on + strandat 453.148 kb on - strandat 453.197 kb on + strandat 453.230 kb on + strandat 453.234 kb on + strandat 453.234 kb on + strandat 453.235 kb on - strandat 453.237 kb on + strandat 453.237 kb on + strandat 453.237 kb on + strandat 453.286 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.325 kb on + strandat 453.340 kb on - strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.570 kb on - strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.589 kb on + strand, within EX31_RS23435at 453.609 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.697 kb on + strand, within EX31_RS23435at 453.697 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.706 kb on - strand, within EX31_RS23435at 453.902 kb on + strand, within EX31_RS23435at 453.903 kb on - strand, within EX31_RS23435at 453.945 kb on + strandat 453.945 kb on + strandat 453.946 kb on - strandat 453.946 kb on - strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.980 kb on + strandat 453.980 kb on + strandat 454.020 kb on + strandat 454.020 kb on + strandat 454.021 kb on - strandat 454.021 kb on - strandat 454.048 kb on - strandat 454.062 kb on + strandat 454.062 kb on + strandat 454.143 kb on + strandat 454.207 kb on + strandat 454.207 kb on + strandat 454.207 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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450,484 + -0.8
450,485 - +4.2
450,535 + +0.8
450,562 + +1.2
450,609 + +0.8
450,609 + -1.1
450,609 + +1.4
450,702 + -1.8
450,702 + +0.2
450,702 + +3.2
450,702 + -1.8
450,702 + -1.8
450,702 + -0.0
450,703 - -0.3
450,824 + EX31_RS23420 0.22 +2.6
450,825 - EX31_RS23420 0.22 +5.2
450,846 + EX31_RS23420 0.27 +2.5
450,846 + EX31_RS23420 0.27 +3.1
450,846 + EX31_RS23420 0.27 +0.6
450,846 + EX31_RS23420 0.27 +1.2
450,846 + EX31_RS23420 0.27 +1.5
450,846 + EX31_RS23420 0.27 +2.2
450,936 + EX31_RS23420 0.51 +0.5
450,936 + EX31_RS23420 0.51 +2.1
450,936 + EX31_RS23420 0.51 +2.8
450,985 + EX31_RS23420 0.63 +0.2
451,004 + EX31_RS23420 0.68 +2.0
451,126 + +0.2
451,151 + +4.1
451,206 + EX31_RS23425 0.24 +2.5
451,206 + EX31_RS23425 0.24 +1.2
451,206 + EX31_RS23425 0.24 +1.4
451,206 + EX31_RS23425 0.24 +1.2
451,206 + EX31_RS23425 0.24 -1.1
451,206 + EX31_RS23425 0.24 +1.5
451,206 + EX31_RS23425 0.24 +1.6
451,206 + EX31_RS23425 0.24 -0.8
451,206 + EX31_RS23425 0.24 +1.4
451,208 + EX31_RS23425 0.25 +1.1
451,208 + EX31_RS23425 0.25 +0.7
451,209 - EX31_RS23425 0.25 -1.8
451,217 + EX31_RS23425 0.27 +1.8
451,217 + EX31_RS23425 0.27 +3.2
451,217 + EX31_RS23425 0.27 +0.2
451,297 + EX31_RS23425 0.50 +0.9
451,297 + EX31_RS23425 0.50 +2.4
451,368 + EX31_RS23425 0.71 +1.2
451,431 + EX31_RS23425 0.89 +0.4
451,431 + EX31_RS23425 0.89 +2.1
451,435 + -3.4
451,435 + +1.2
451,440 + +1.1
451,467 + +0.5
451,467 + +0.6
451,467 + +1.2
451,467 + +1.9
451,607 + -1.3
451,680 + EX31_RS23430 0.12 -0.8
451,680 + EX31_RS23430 0.12 +1.5
451,680 + EX31_RS23430 0.12 +1.2
451,680 + EX31_RS23430 0.12 +2.3
451,680 + EX31_RS23430 0.12 +2.5
451,704 + EX31_RS23430 0.13 -0.8
451,704 + EX31_RS23430 0.13 +0.9
451,704 + EX31_RS23430 0.13 -0.8
451,704 + EX31_RS23430 0.13 +2.9
451,704 + EX31_RS23430 0.13 +0.8
451,705 - EX31_RS23430 0.13 +4.2
451,706 + EX31_RS23430 0.13 +0.8
451,731 + EX31_RS23430 0.15 +2.2
451,731 + EX31_RS23430 0.15 +3.0
451,731 + EX31_RS23430 0.15 +4.0
451,731 + EX31_RS23430 0.15 -0.3
451,731 + EX31_RS23430 0.15 +1.7
451,731 + EX31_RS23430 0.15 +1.8
451,731 + EX31_RS23430 0.15 +3.2
451,732 - EX31_RS23430 0.15 +2.1
451,732 - EX31_RS23430 0.15 +4.6
451,732 - EX31_RS23430 0.15 -1.9
451,733 + EX31_RS23430 0.15 +2.6
451,733 + EX31_RS23430 0.15 +2.0
451,733 + EX31_RS23430 0.15 -0.4
451,733 + EX31_RS23430 0.15 +0.9
451,733 + EX31_RS23430 0.15 +2.7
451,733 + EX31_RS23430 0.15 +1.9
451,733 + EX31_RS23430 0.15 +0.7
451,733 + EX31_RS23430 0.15 -0.1
451,815 + EX31_RS23430 0.19 -1.1
451,815 + EX31_RS23430 0.19 +1.5
451,816 - EX31_RS23430 0.19 +1.6
451,871 + EX31_RS23430 0.23 +1.1
451,920 + EX31_RS23430 0.25 +2.0
452,046 + EX31_RS23430 0.32 +2.0
452,123 + EX31_RS23430 0.37 +1.9
452,123 + EX31_RS23430 0.37 +2.0
452,351 + EX31_RS23430 0.50 +1.1
452,429 + EX31_RS23430 0.54 +2.3
452,535 + EX31_RS23430 0.60 +2.0
452,535 + EX31_RS23430 0.60 +2.7
452,535 + EX31_RS23430 0.60 +2.4
452,535 + EX31_RS23430 0.60 +0.8
452,535 + EX31_RS23430 0.60 +1.7
452,535 + EX31_RS23430 0.60 -1.1
452,535 + EX31_RS23430 0.60 +1.8
452,535 + EX31_RS23430 0.60 +1.7
452,535 + EX31_RS23430 0.60 -0.8
452,536 - EX31_RS23430 0.60 +2.0
452,738 + EX31_RS23430 0.72 +1.2
452,788 + EX31_RS23430 0.74 +4.4
452,788 + EX31_RS23430 0.74 +1.4
452,975 + EX31_RS23430 0.85 +0.2
452,975 + EX31_RS23430 0.85 +2.8
452,976 - EX31_RS23430 0.85 +1.8
453,066 + -1.3
453,147 + +2.9
453,147 + -1.3
453,147 + +3.4
453,148 - +3.1
453,197 + +2.8
453,230 + +0.3
453,234 + +2.0
453,234 + -1.3
453,235 - +4.8
453,237 + +1.1
453,237 + -1.1
453,237 + -0.8
453,286 + +1.8
453,313 + +2.7
453,313 + +0.5
453,313 + +0.8
453,313 + -0.3
453,325 + +1.8
453,340 - EX31_RS23435 0.11 +1.2
453,483 + EX31_RS23435 0.31 +1.7
453,483 + EX31_RS23435 0.31 +1.2
453,483 + EX31_RS23435 0.31 -0.8
453,570 - EX31_RS23435 0.43 +3.0
453,572 + EX31_RS23435 0.44 +1.6
453,572 + EX31_RS23435 0.44 -1.3
453,572 + EX31_RS23435 0.44 +1.0
453,589 + EX31_RS23435 0.46 +0.5
453,609 + EX31_RS23435 0.49 +1.6
453,616 + EX31_RS23435 0.50 +1.2
453,616 + EX31_RS23435 0.50 +2.8
453,616 + EX31_RS23435 0.50 -1.1
453,616 + EX31_RS23435 0.50 +0.8
453,697 + EX31_RS23435 0.61 +2.4
453,697 + EX31_RS23435 0.61 +0.7
453,705 + EX31_RS23435 0.62 -0.0
453,705 + EX31_RS23435 0.62 +2.5
453,705 + EX31_RS23435 0.62 +1.9
453,706 - EX31_RS23435 0.62 -2.1
453,902 + EX31_RS23435 0.90 +1.7
453,903 - EX31_RS23435 0.90 +2.7
453,945 + +0.8
453,945 + +1.5
453,946 - +1.2
453,946 - +0.2
453,959 + +0.7
453,959 + -2.5
453,980 + +0.6
453,980 + +0.2
454,020 + -0.8
454,020 + +1.8
454,021 - +0.1
454,021 - -0.3
454,048 - +0.2
454,062 + -1.9
454,062 + -0.6
454,143 + -2.2
454,207 + +3.8
454,207 + +2.3
454,207 + -2.6

Or see this region's nucleotide sequence