Strain Fitness in Rahnella sp. WP5 around EX31_RS21825

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21820 and EX31_RS21825 are separated by 424 nucleotidesEX31_RS21825 and EX31_RS21830 are separated by 28 nucleotides EX31_RS21820: EX31_RS21820 - hypothetical protein, at 106,550 to 107,368 _RS21820 EX31_RS21825: EX31_RS21825 - elongation factor 4, at 107,793 to 109,592 _RS21825 EX31_RS21830: EX31_RS21830 - signal peptidase I, at 109,621 to 110,598 _RS21830 Position (kb) 107 108 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 106.842 kb on + strand, within EX31_RS21820at 106.842 kb on + strand, within EX31_RS21820at 106.842 kb on + strand, within EX31_RS21820at 106.843 kb on - strand, within EX31_RS21820at 106.843 kb on - strand, within EX31_RS21820at 106.846 kb on + strand, within EX31_RS21820at 106.847 kb on - strand, within EX31_RS21820at 106.900 kb on - strand, within EX31_RS21820at 106.900 kb on - strand, within EX31_RS21820at 106.932 kb on - strand, within EX31_RS21820at 106.961 kb on - strand, within EX31_RS21820at 106.963 kb on + strand, within EX31_RS21820at 106.963 kb on + strand, within EX31_RS21820at 106.963 kb on + strand, within EX31_RS21820at 106.964 kb on - strand, within EX31_RS21820at 106.964 kb on - strand, within EX31_RS21820at 106.964 kb on - strand, within EX31_RS21820at 106.964 kb on - strand, within EX31_RS21820at 106.964 kb on - strand, within EX31_RS21820at 107.010 kb on - strand, within EX31_RS21820at 107.025 kb on + strand, within EX31_RS21820at 107.026 kb on - strand, within EX31_RS21820at 107.026 kb on - strand, within EX31_RS21820at 107.047 kb on - strand, within EX31_RS21820at 107.047 kb on - strand, within EX31_RS21820at 107.047 kb on - strand, within EX31_RS21820at 107.048 kb on + strand, within EX31_RS21820at 107.048 kb on + strand, within EX31_RS21820at 107.048 kb on + strand, within EX31_RS21820at 107.048 kb on + strand, within EX31_RS21820at 107.048 kb on + strand, within EX31_RS21820at 107.048 kb on + strand, within EX31_RS21820at 107.048 kb on + strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.049 kb on - strand, within EX31_RS21820at 107.050 kb on + strand, within EX31_RS21820at 107.050 kb on + strand, within EX31_RS21820at 107.050 kb on + strand, within EX31_RS21820at 107.050 kb on + strand, within EX31_RS21820at 107.051 kb on - strand, within EX31_RS21820at 107.051 kb on - strand, within EX31_RS21820at 107.051 kb on - strand, within EX31_RS21820at 107.051 kb on - strand, within EX31_RS21820at 107.051 kb on - strand, within EX31_RS21820at 107.075 kb on - strand, within EX31_RS21820at 107.103 kb on - strand, within EX31_RS21820at 107.105 kb on - strand, within EX31_RS21820at 107.134 kb on - strand, within EX31_RS21820at 107.151 kb on - strand, within EX31_RS21820at 107.192 kb on - strand, within EX31_RS21820at 107.213 kb on + strand, within EX31_RS21820at 107.368 kb on + strandat 107.368 kb on + strandat 107.369 kb on - strandat 107.369 kb on - strandat 107.369 kb on - strandat 107.459 kb on - strandat 107.468 kb on + strandat 107.503 kb on + strandat 107.503 kb on + strandat 107.503 kb on + strandat 107.504 kb on - strandat 107.504 kb on - strandat 107.543 kb on + strandat 107.543 kb on + strandat 107.543 kb on + strandat 107.544 kb on - strandat 107.571 kb on + strandat 107.571 kb on + strandat 107.571 kb on + strandat 107.571 kb on + strandat 107.571 kb on + strandat 107.643 kb on + strandat 107.643 kb on + strandat 107.644 kb on - strandat 107.654 kb on + strandat 107.654 kb on + strandat 107.654 kb on + strandat 107.654 kb on + strandat 107.654 kb on + strandat 107.670 kb on + strandat 107.670 kb on + strandat 107.693 kb on + strandat 107.693 kb on + strandat 107.693 kb on + strandat 107.693 kb on + strandat 107.693 kb on + strandat 107.694 kb on - strandat 107.694 kb on - strandat 107.728 kb on + strandat 107.728 kb on + strandat 107.728 kb on + strandat 107.728 kb on + strandat 107.743 kb on + strandat 107.743 kb on + strandat 107.744 kb on - strandat 107.770 kb on - strandat 107.778 kb on - strandat 107.789 kb on + strandat 107.789 kb on + strandat 107.801 kb on + strandat 107.820 kb on - strandat 107.861 kb on + strandat 107.862 kb on - strandat 107.862 kb on - strandat 107.865 kb on - strandat 107.979 kb on + strand, within EX31_RS21825at 108.048 kb on + strand, within EX31_RS21825at 108.055 kb on + strand, within EX31_RS21825at 108.088 kb on + strand, within EX31_RS21825at 108.091 kb on + strand, within EX31_RS21825at 108.141 kb on + strand, within EX31_RS21825at 108.141 kb on + strand, within EX31_RS21825at 108.144 kb on - strand, within EX31_RS21825at 108.396 kb on - strand, within EX31_RS21825at 108.399 kb on + strand, within EX31_RS21825at 108.399 kb on + strand, within EX31_RS21825at 108.399 kb on + strand, within EX31_RS21825at 108.400 kb on - strand, within EX31_RS21825at 108.486 kb on + strand, within EX31_RS21825at 108.585 kb on - strand, within EX31_RS21825at 108.769 kb on - strand, within EX31_RS21825at 108.906 kb on + strand, within EX31_RS21825at 108.939 kb on + strand, within EX31_RS21825at 108.939 kb on + strand, within EX31_RS21825at 108.998 kb on + strand, within EX31_RS21825at 109.032 kb on + strand, within EX31_RS21825at 109.049 kb on + strand, within EX31_RS21825at 109.049 kb on + strand, within EX31_RS21825at 109.049 kb on + strand, within EX31_RS21825at 109.058 kb on + strand, within EX31_RS21825at 109.092 kb on + strand, within EX31_RS21825at 109.144 kb on + strand, within EX31_RS21825at 109.200 kb on + strand, within EX31_RS21825at 109.234 kb on + strand, within EX31_RS21825at 109.234 kb on + strand, within EX31_RS21825at 109.234 kb on + strand, within EX31_RS21825at 109.234 kb on + strand, within EX31_RS21825at 109.234 kb on + strand, within EX31_RS21825at 109.234 kb on + strand, within EX31_RS21825at 109.249 kb on + strand, within EX31_RS21825at 109.249 kb on + strand, within EX31_RS21825at 109.249 kb on + strand, within EX31_RS21825at 109.426 kb on + strandat 109.426 kb on + strandat 109.540 kb on + strandat 109.590 kb on + strandat 109.590 kb on + strandat 109.590 kb on + strandat 109.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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106,842 + EX31_RS21820 0.36 +2.1
106,842 + EX31_RS21820 0.36 +1.0
106,842 + EX31_RS21820 0.36 +2.4
106,843 - EX31_RS21820 0.36 -1.6
106,843 - EX31_RS21820 0.36 -0.6
106,846 + EX31_RS21820 0.36 -0.4
106,847 - EX31_RS21820 0.36 +1.4
106,900 - EX31_RS21820 0.43 -0.2
106,900 - EX31_RS21820 0.43 -1.6
106,932 - EX31_RS21820 0.47 +2.1
106,961 - EX31_RS21820 0.50 -1.2
106,963 + EX31_RS21820 0.50 +2.1
106,963 + EX31_RS21820 0.50 +1.4
106,963 + EX31_RS21820 0.50 +1.9
106,964 - EX31_RS21820 0.51 +1.4
106,964 - EX31_RS21820 0.51 -1.4
106,964 - EX31_RS21820 0.51 +0.5
106,964 - EX31_RS21820 0.51 -0.4
106,964 - EX31_RS21820 0.51 +1.4
107,010 - EX31_RS21820 0.56 -1.2
107,025 + EX31_RS21820 0.58 -2.2
107,026 - EX31_RS21820 0.58 +0.4
107,026 - EX31_RS21820 0.58 +1.4
107,047 - EX31_RS21820 0.61 +2.2
107,047 - EX31_RS21820 0.61 +1.5
107,047 - EX31_RS21820 0.61 -2.7
107,048 + EX31_RS21820 0.61 -2.4
107,048 + EX31_RS21820 0.61 +1.0
107,048 + EX31_RS21820 0.61 +0.3
107,048 + EX31_RS21820 0.61 +1.0
107,048 + EX31_RS21820 0.61 +3.4
107,048 + EX31_RS21820 0.61 +1.4
107,048 + EX31_RS21820 0.61 +0.5
107,049 - EX31_RS21820 0.61 -0.6
107,049 - EX31_RS21820 0.61 +2.0
107,049 - EX31_RS21820 0.61 -3.1
107,049 - EX31_RS21820 0.61 +1.6
107,049 - EX31_RS21820 0.61 -0.2
107,049 - EX31_RS21820 0.61 -0.6
107,049 - EX31_RS21820 0.61 +1.8
107,049 - EX31_RS21820 0.61 -1.6
107,049 - EX31_RS21820 0.61 +2.6
107,049 - EX31_RS21820 0.61 +0.5
107,050 + EX31_RS21820 0.61 +2.8
107,050 + EX31_RS21820 0.61 -0.6
107,050 + EX31_RS21820 0.61 -2.2
107,050 + EX31_RS21820 0.61 +0.2
107,051 - EX31_RS21820 0.61 +1.4
107,051 - EX31_RS21820 0.61 +0.4
107,051 - EX31_RS21820 0.61 +0.9
107,051 - EX31_RS21820 0.61 -1.0
107,051 - EX31_RS21820 0.61 -2.3
107,075 - EX31_RS21820 0.64 +0.5
107,103 - EX31_RS21820 0.68 -1.4
107,105 - EX31_RS21820 0.68 +2.0
107,134 - EX31_RS21820 0.71 +1.5
107,151 - EX31_RS21820 0.73 -1.0
107,192 - EX31_RS21820 0.78 +0.9
107,213 + EX31_RS21820 0.81 +2.1
107,368 + -0.2
107,368 + -1.2
107,369 - +0.4
107,369 - +3.2
107,369 - +2.9
107,459 - -1.2
107,468 + +0.4
107,503 + +1.6
107,503 + +1.5
107,503 + -2.4
107,504 - +1.2
107,504 - +1.4
107,543 + +0.8
107,543 + -0.3
107,543 + +0.5
107,544 - +2.1
107,571 + +1.0
107,571 + -1.4
107,571 + -0.2
107,571 + -0.2
107,571 + +1.5
107,643 + +0.4
107,643 + -0.2
107,644 - -2.1
107,654 + +0.2
107,654 + +1.0
107,654 + +1.5
107,654 + -3.0
107,654 + +0.4
107,670 + +0.3
107,670 + +0.4
107,693 + +2.5
107,693 + -0.3
107,693 + +1.2
107,693 + -0.6
107,693 + +1.1
107,694 - +2.6
107,694 - +0.4
107,728 + +1.1
107,728 + +2.2
107,728 + +0.2
107,728 + +0.8
107,743 + -2.4
107,743 + -1.6
107,744 - +1.8
107,770 - -2.2
107,778 - -1.2
107,789 + +0.2
107,789 + -1.2
107,801 + -2.0
107,820 - -0.6
107,861 + -1.8
107,862 - -2.0
107,862 - -1.2
107,865 - +0.4
107,979 + EX31_RS21825 0.10 -1.8
108,048 + EX31_RS21825 0.14 +1.6
108,055 + EX31_RS21825 0.15 -2.9
108,088 + EX31_RS21825 0.16 -0.8
108,091 + EX31_RS21825 0.17 -3.4
108,141 + EX31_RS21825 0.19 -2.3
108,141 + EX31_RS21825 0.19 +1.2
108,144 - EX31_RS21825 0.20 -1.4
108,396 - EX31_RS21825 0.34 -0.6
108,399 + EX31_RS21825 0.34 -0.7
108,399 + EX31_RS21825 0.34 -1.8
108,399 + EX31_RS21825 0.34 -0.6
108,400 - EX31_RS21825 0.34 +3.7
108,486 + EX31_RS21825 0.39 -1.2
108,585 - EX31_RS21825 0.44 +1.4
108,769 - EX31_RS21825 0.54 -1.0
108,906 + EX31_RS21825 0.62 -1.8
108,939 + EX31_RS21825 0.64 +0.7
108,939 + EX31_RS21825 0.64 +0.4
108,998 + EX31_RS21825 0.67 -0.6
109,032 + EX31_RS21825 0.69 -1.6
109,049 + EX31_RS21825 0.70 -2.1
109,049 + EX31_RS21825 0.70 -0.6
109,049 + EX31_RS21825 0.70 +0.2
109,058 + EX31_RS21825 0.70 -1.2
109,092 + EX31_RS21825 0.72 -0.2
109,144 + EX31_RS21825 0.75 -2.0
109,200 + EX31_RS21825 0.78 -0.6
109,234 + EX31_RS21825 0.80 +0.4
109,234 + EX31_RS21825 0.80 -1.4
109,234 + EX31_RS21825 0.80 -1.6
109,234 + EX31_RS21825 0.80 -2.1
109,234 + EX31_RS21825 0.80 -1.2
109,234 + EX31_RS21825 0.80 -2.4
109,249 + EX31_RS21825 0.81 -1.8
109,249 + EX31_RS21825 0.81 -2.2
109,249 + EX31_RS21825 0.81 -0.1
109,426 + -2.0
109,426 + -0.4
109,540 + -1.4
109,590 + +1.2
109,590 + +2.4
109,590 + +1.6
109,590 + +1.1

Or see this region's nucleotide sequence