Strain Fitness in Rahnella sp. WP5 around EX31_RS21570

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21565 and EX31_RS21570 are separated by 379 nucleotidesEX31_RS21570 and EX31_RS21575 are separated by 265 nucleotidesEX31_RS21575 and EX31_RS21580 are separated by 162 nucleotides EX31_RS21565: EX31_RS21565 - ribokinase, at 58,401 to 59,333 _RS21565 EX31_RS21570: EX31_RS21570 - hypothetical protein, at 59,713 to 60,033 _RS21570 EX31_RS21575: EX31_RS21575 - hypothetical protein, at 60,299 to 60,700 _RS21575 EX31_RS21580: EX31_RS21580 - sugar ABC transporter permease, at 60,863 to 61,735 _RS21580 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 58.884 kb on + strand, within EX31_RS21565at 58.884 kb on + strand, within EX31_RS21565at 58.884 kb on + strand, within EX31_RS21565at 58.884 kb on + strand, within EX31_RS21565at 58.884 kb on + strand, within EX31_RS21565at 58.884 kb on + strand, within EX31_RS21565at 58.884 kb on + strand, within EX31_RS21565at 58.884 kb on + strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.885 kb on - strand, within EX31_RS21565at 58.948 kb on + strand, within EX31_RS21565at 59.072 kb on - strand, within EX31_RS21565at 59.171 kb on + strand, within EX31_RS21565at 59.241 kb on + strandat 59.241 kb on + strandat 59.241 kb on + strandat 59.242 kb on - strandat 59.242 kb on - strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.251 kb on + strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.252 kb on - strandat 59.292 kb on + strandat 59.292 kb on + strandat 59.292 kb on + strandat 59.292 kb on + strandat 59.293 kb on - strandat 59.293 kb on - strandat 59.293 kb on - strandat 59.350 kb on + strandat 59.350 kb on + strandat 59.350 kb on + strandat 59.351 kb on - strandat 59.427 kb on + strandat 59.428 kb on - strandat 59.477 kb on + strandat 59.477 kb on + strandat 59.478 kb on - strandat 59.478 kb on - strandat 59.478 kb on - strandat 59.479 kb on + strandat 59.504 kb on + strandat 59.553 kb on + strandat 59.553 kb on + strandat 59.553 kb on + strandat 59.554 kb on - strandat 59.554 kb on - strandat 59.554 kb on - strandat 59.554 kb on - strandat 59.579 kb on + strandat 59.580 kb on - strandat 59.585 kb on - strandat 59.641 kb on - strandat 59.641 kb on - strandat 59.692 kb on + strandat 59.693 kb on - strandat 59.709 kb on + strandat 59.709 kb on + strandat 59.710 kb on - strandat 59.710 kb on - strandat 59.818 kb on + strand, within EX31_RS21570at 59.818 kb on + strand, within EX31_RS21570at 59.819 kb on - strand, within EX31_RS21570at 59.819 kb on - strand, within EX31_RS21570at 59.898 kb on + strand, within EX31_RS21570at 59.942 kb on - strand, within EX31_RS21570at 60.100 kb on + strandat 60.116 kb on + strandat 60.190 kb on + strandat 60.282 kb on - strandat 60.370 kb on - strand, within EX31_RS21575at 60.427 kb on + strand, within EX31_RS21575at 60.450 kb on - strand, within EX31_RS21575at 60.497 kb on + strand, within EX31_RS21575at 60.637 kb on + strand, within EX31_RS21575at 60.641 kb on + strand, within EX31_RS21575at 60.673 kb on + strandat 60.675 kb on + strandat 60.676 kb on - strandat 60.676 kb on - strandat 60.746 kb on + strandat 60.771 kb on - strandat 60.830 kb on + strandat 60.831 kb on - strandat 60.831 kb on - strandat 60.839 kb on + strandat 60.861 kb on + strandat 60.922 kb on - strandat 60.922 kb on - strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.930 kb on - strandat 60.930 kb on - strandat 60.930 kb on - strandat 60.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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58,884 + EX31_RS21565 0.52 -2.1
58,884 + EX31_RS21565 0.52 +2.1
58,884 + EX31_RS21565 0.52 -0.2
58,884 + EX31_RS21565 0.52 -1.2
58,884 + EX31_RS21565 0.52 -1.2
58,884 + EX31_RS21565 0.52 -0.3
58,884 + EX31_RS21565 0.52 +2.2
58,884 + EX31_RS21565 0.52 +1.5
58,885 - EX31_RS21565 0.52 -2.3
58,885 - EX31_RS21565 0.52 -2.1
58,885 - EX31_RS21565 0.52 -1.0
58,885 - EX31_RS21565 0.52 -2.8
58,885 - EX31_RS21565 0.52 +0.5
58,885 - EX31_RS21565 0.52 +2.4
58,885 - EX31_RS21565 0.52 -2.7
58,885 - EX31_RS21565 0.52 +0.5
58,885 - EX31_RS21565 0.52 -1.0
58,885 - EX31_RS21565 0.52 +0.5
58,948 + EX31_RS21565 0.59 -1.2
59,072 - EX31_RS21565 0.72 +1.4
59,171 + EX31_RS21565 0.83 +1.4
59,241 + +2.5
59,241 + +1.4
59,241 + -1.0
59,242 - -2.0
59,242 - +0.4
59,251 + +2.1
59,251 + -0.6
59,251 + -1.2
59,251 + -2.0
59,251 + +0.2
59,251 + -0.3
59,251 + +3.0
59,251 + +2.0
59,251 + +2.2
59,251 + -1.1
59,251 + +1.5
59,252 - +0.2
59,252 - +0.4
59,252 - -2.7
59,252 - +1.4
59,252 - -1.3
59,252 - -1.0
59,252 - +1.9
59,252 - -2.4
59,252 - -1.0
59,252 - -1.2
59,252 - +0.2
59,252 - -1.0
59,252 - -2.2
59,292 + +1.4
59,292 + -0.1
59,292 + -1.6
59,292 + +1.6
59,293 - +0.0
59,293 - +0.5
59,293 - +0.8
59,350 + +3.4
59,350 + +2.5
59,350 + +2.0
59,351 - +0.8
59,427 + +3.5
59,428 - -0.3
59,477 + +3.1
59,477 + +0.4
59,478 - +1.7
59,478 - -1.4
59,478 - +2.7
59,479 + -1.4
59,504 + -1.3
59,553 + +0.6
59,553 + -2.1
59,553 + +1.4
59,554 - -1.2
59,554 - -1.8
59,554 - -1.8
59,554 - +1.4
59,579 + -1.4
59,580 - -2.9
59,585 - -0.6
59,641 - +4.4
59,641 - -1.0
59,692 + -1.2
59,693 - +0.1
59,709 + -1.2
59,709 + +1.9
59,710 - +2.0
59,710 - -2.1
59,818 + EX31_RS21570 0.33 -2.2
59,818 + EX31_RS21570 0.33 +0.0
59,819 - EX31_RS21570 0.33 -2.5
59,819 - EX31_RS21570 0.33 -1.2
59,898 + EX31_RS21570 0.58 -2.7
59,942 - EX31_RS21570 0.71 +2.0
60,100 + -2.0
60,116 + -3.0
60,190 + -2.4
60,282 - -1.6
60,370 - EX31_RS21575 0.18 -0.2
60,427 + EX31_RS21575 0.32 +0.7
60,450 - EX31_RS21575 0.38 -2.2
60,497 + EX31_RS21575 0.49 +0.6
60,637 + EX31_RS21575 0.84 -0.2
60,641 + EX31_RS21575 0.85 -3.0
60,673 + +1.5
60,675 + +3.0
60,676 - +0.3
60,676 - -0.2
60,746 + -0.6
60,771 - +0.9
60,830 + +1.6
60,831 - +0.4
60,831 - -2.0
60,839 + +0.4
60,861 + -1.0
60,922 - +0.1
60,922 - +1.9
60,929 + -0.2
60,929 + +0.5
60,929 + -0.2
60,929 + -2.2
60,929 + -1.2
60,929 + -1.7
60,930 - +0.9
60,930 - -1.2
60,930 - +0.9
60,932 + -0.6

Or see this region's nucleotide sequence