Strain Fitness in Rahnella sp. WP5 around EX31_RS20880

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20865 and EX31_RS20870 are separated by 37 nucleotidesEX31_RS20870 and EX31_RS20880 are separated by 632 nucleotidesEX31_RS20880 and EX31_RS25605 are separated by 14 nucleotidesEX31_RS25605 and EX31_RS20885 are separated by 274 nucleotidesEX31_RS20885 and EX31_RS20890 overlap by 4 nucleotides EX31_RS20865: EX31_RS20865 - bacteriocin immunity protein, at 820,671 to 820,925 _RS20865 EX31_RS20870: EX31_RS20870 - colicin, at 820,963 to 821,226 _RS20870 EX31_RS20880: EX31_RS20880 - hypothetical protein, at 821,859 to 823,301 _RS20880 EX31_RS25605: EX31_RS25605 - transposase, at 823,316 to 823,566 _RS25605 EX31_RS20885: EX31_RS20885 - conjugal transfer protein TraD, at 823,841 to 824,125 _RS20885 EX31_RS20890: EX31_RS20890 - hypothetical protein, at 824,122 to 824,379 _RS20890 Position (kb) 821 822 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 820.897 kb on + strand, within EX31_RS20865at 820.911 kb on - strandat 820.911 kb on - strandat 820.999 kb on - strand, within EX31_RS20870at 821.022 kb on - strand, within EX31_RS20870at 821.026 kb on - strand, within EX31_RS20870at 821.026 kb on - strand, within EX31_RS20870at 821.096 kb on + strand, within EX31_RS20870at 821.096 kb on + strand, within EX31_RS20870at 821.100 kb on + strand, within EX31_RS20870at 821.100 kb on + strand, within EX31_RS20870at 821.100 kb on + strand, within EX31_RS20870at 821.101 kb on - strand, within EX31_RS20870at 821.101 kb on - strand, within EX31_RS20870at 821.101 kb on - strand, within EX31_RS20870at 821.140 kb on + strand, within EX31_RS20870at 821.150 kb on + strand, within EX31_RS20870at 821.150 kb on + strand, within EX31_RS20870at 821.191 kb on - strand, within EX31_RS20870at 821.365 kb on + strandat 821.366 kb on - strandat 821.366 kb on - strandat 821.366 kb on - strandat 821.366 kb on - strandat 821.408 kb on + strandat 821.409 kb on - strandat 821.409 kb on - strandat 821.454 kb on - strandat 821.485 kb on - strandat 821.561 kb on - strandat 821.561 kb on - strandat 821.561 kb on - strandat 821.563 kb on + strandat 821.563 kb on + strandat 821.563 kb on + strandat 821.563 kb on + strandat 821.564 kb on - strandat 821.564 kb on - strandat 821.564 kb on - strandat 821.573 kb on - strandat 821.592 kb on + strandat 821.592 kb on + strandat 821.593 kb on - strandat 821.593 kb on - strandat 821.593 kb on - strandat 821.606 kb on + strandat 821.628 kb on + strandat 821.628 kb on + strandat 821.635 kb on + strandat 821.648 kb on - strandat 821.648 kb on - strandat 821.661 kb on - strandat 821.671 kb on + strandat 821.671 kb on + strandat 821.671 kb on + strandat 821.671 kb on + strandat 821.671 kb on + strandat 821.672 kb on - strandat 821.672 kb on - strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.673 kb on + strandat 821.674 kb on - strandat 821.674 kb on - strandat 821.674 kb on - strandat 821.674 kb on - strandat 821.674 kb on - strandat 821.675 kb on + strandat 821.675 kb on + strandat 821.675 kb on + strandat 821.675 kb on + strandat 821.675 kb on + strandat 821.676 kb on - strandat 821.676 kb on - strandat 821.676 kb on - strandat 821.676 kb on - strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.749 kb on + strandat 821.797 kb on - strandat 821.855 kb on - strandat 821.856 kb on + strandat 822.090 kb on - strand, within EX31_RS20880at 822.245 kb on + strand, within EX31_RS20880at 822.245 kb on + strand, within EX31_RS20880at 822.597 kb on - strand, within EX31_RS20880at 822.940 kb on + strand, within EX31_RS20880at 822.955 kb on - strand, within EX31_RS20880at 822.983 kb on + strand, within EX31_RS20880at 822.983 kb on + strand, within EX31_RS20880at 822.984 kb on - strand, within EX31_RS20880at 822.985 kb on + strand, within EX31_RS20880at 822.986 kb on - strand, within EX31_RS20880at 823.331 kb on - strandat 823.366 kb on + strand, within EX31_RS25605at 823.451 kb on + strand, within EX31_RS25605at 823.483 kb on + strand, within EX31_RS25605at 823.483 kb on + strand, within EX31_RS25605at 823.484 kb on - strand, within EX31_RS25605at 823.486 kb on - strand, within EX31_RS25605at 823.488 kb on + strand, within EX31_RS25605at 823.488 kb on + strand, within EX31_RS25605at 823.544 kb on + strandat 823.544 kb on + strandat 823.545 kb on - strandat 823.592 kb on - strandat 823.592 kb on - strandat 823.634 kb on + strandat 823.645 kb on + strandat 823.646 kb on - strandat 823.648 kb on + strandat 823.794 kb on - strandat 823.794 kb on - strandat 823.842 kb on + strandat 823.842 kb on + strandat 823.842 kb on + strandat 823.843 kb on - strandat 823.875 kb on + strand, within EX31_RS20885at 823.875 kb on + strand, within EX31_RS20885at 823.875 kb on + strand, within EX31_RS20885at 823.876 kb on - strand, within EX31_RS20885at 823.876 kb on - strand, within EX31_RS20885at 823.931 kb on - strand, within EX31_RS20885at 823.934 kb on - strand, within EX31_RS20885at 823.934 kb on - strand, within EX31_RS20885at 823.965 kb on - strand, within EX31_RS20885at 823.968 kb on + strand, within EX31_RS20885at 823.969 kb on - strand, within EX31_RS20885at 823.972 kb on + strand, within EX31_RS20885at 823.973 kb on - strand, within EX31_RS20885at 823.973 kb on - strand, within EX31_RS20885at 824.074 kb on - strand, within EX31_RS20885at 824.235 kb on + strand, within EX31_RS20890at 824.236 kb on - strand, within EX31_RS20890

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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820,897 + EX31_RS20865 0.89 +0.6
820,911 - +1.4
820,911 - -3.0
820,999 - EX31_RS20870 0.14 -0.1
821,022 - EX31_RS20870 0.22 +1.5
821,026 - EX31_RS20870 0.24 -2.2
821,026 - EX31_RS20870 0.24 +0.9
821,096 + EX31_RS20870 0.50 -2.0
821,096 + EX31_RS20870 0.50 -0.2
821,100 + EX31_RS20870 0.52 +0.4
821,100 + EX31_RS20870 0.52 +0.6
821,100 + EX31_RS20870 0.52 -1.8
821,101 - EX31_RS20870 0.52 -2.5
821,101 - EX31_RS20870 0.52 -0.2
821,101 - EX31_RS20870 0.52 +1.1
821,140 + EX31_RS20870 0.67 -1.0
821,150 + EX31_RS20870 0.71 -1.4
821,150 + EX31_RS20870 0.71 -0.6
821,191 - EX31_RS20870 0.86 -2.5
821,365 + -2.1
821,366 - -0.1
821,366 - -1.0
821,366 - -1.2
821,366 - +1.1
821,408 + -0.2
821,409 - +0.2
821,409 - +1.0
821,454 - -2.1
821,485 - -1.4
821,561 - +0.4
821,561 - -0.8
821,561 - -2.1
821,563 + -1.0
821,563 + +1.0
821,563 + -1.0
821,563 + -1.2
821,564 - -1.2
821,564 - +1.6
821,564 - -0.2
821,573 - +2.8
821,592 + -2.5
821,592 + -0.2
821,593 - +1.8
821,593 - +0.7
821,593 - -1.1
821,606 + -0.2
821,628 + -0.7
821,628 + +0.0
821,635 + +1.7
821,648 - -2.4
821,648 - -2.3
821,661 - -1.0
821,671 + +1.4
821,671 + -1.6
821,671 + -1.2
821,671 + +1.5
821,671 + +1.0
821,672 - +2.9
821,672 - -2.2
821,673 + +1.7
821,673 + +1.5
821,673 + -2.3
821,673 + -1.3
821,673 + -1.3
821,673 + -0.2
821,673 + +0.3
821,673 + -1.0
821,673 + +0.2
821,674 - +1.4
821,674 - -0.3
821,674 - -2.1
821,674 - +0.9
821,674 - +0.4
821,675 + +0.3
821,675 + -0.5
821,675 + -1.2
821,675 + -3.5
821,675 + -0.2
821,676 - +0.6
821,676 - -1.3
821,676 - -1.4
821,676 - -0.2
821,749 + +2.7
821,749 + +1.5
821,749 + +0.1
821,749 + -2.1
821,749 + +2.1
821,749 + -2.1
821,797 - +2.4
821,855 - -2.6
821,856 + +1.5
822,090 - EX31_RS20880 0.16 -1.2
822,245 + EX31_RS20880 0.27 -1.6
822,245 + EX31_RS20880 0.27 +1.3
822,597 - EX31_RS20880 0.51 -1.4
822,940 + EX31_RS20880 0.75 -3.0
822,955 - EX31_RS20880 0.76 -2.2
822,983 + EX31_RS20880 0.78 -2.3
822,983 + EX31_RS20880 0.78 +0.6
822,984 - EX31_RS20880 0.78 +0.7
822,985 + EX31_RS20880 0.78 -1.4
822,986 - EX31_RS20880 0.78 -0.2
823,331 - -1.0
823,366 + EX31_RS25605 0.20 -0.6
823,451 + EX31_RS25605 0.54 +0.4
823,483 + EX31_RS25605 0.67 -2.2
823,483 + EX31_RS25605 0.67 +0.5
823,484 - EX31_RS25605 0.67 -0.2
823,486 - EX31_RS25605 0.68 -1.8
823,488 + EX31_RS25605 0.69 -2.4
823,488 + EX31_RS25605 0.69 +0.6
823,544 + -0.1
823,544 + +2.4
823,545 - +1.4
823,592 - -1.1
823,592 - +0.8
823,634 + -2.2
823,645 + +1.5
823,646 - +1.6
823,648 + +2.8
823,794 - -1.0
823,794 - +1.8
823,842 + +1.9
823,842 + -1.2
823,842 + +0.4
823,843 - -0.3
823,875 + EX31_RS20885 0.12 +1.9
823,875 + EX31_RS20885 0.12 +0.4
823,875 + EX31_RS20885 0.12 +0.4
823,876 - EX31_RS20885 0.12 +1.1
823,876 - EX31_RS20885 0.12 -0.4
823,931 - EX31_RS20885 0.32 +0.4
823,934 - EX31_RS20885 0.33 +1.5
823,934 - EX31_RS20885 0.33 -1.0
823,965 - EX31_RS20885 0.44 +1.8
823,968 + EX31_RS20885 0.45 -0.2
823,969 - EX31_RS20885 0.45 -2.4
823,972 + EX31_RS20885 0.46 -1.2
823,973 - EX31_RS20885 0.46 +0.0
823,973 - EX31_RS20885 0.46 +1.4
824,074 - EX31_RS20885 0.82 +1.1
824,235 + EX31_RS20890 0.44 -1.4
824,236 - EX31_RS20890 0.44 -0.2

Or see this region's nucleotide sequence