Strain Fitness in Rahnella sp. WP5 around EX31_RS19820

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19815 and EX31_RS19820 are separated by 2 nucleotidesEX31_RS19820 and EX31_RS19825 are separated by 284 nucleotides EX31_RS19815: EX31_RS19815 - Gfo/Idh/MocA family oxidoreductase, at 594,173 to 595,240 _RS19815 EX31_RS19820: EX31_RS19820 - Gfo/Idh/MocA family oxidoreductase, at 595,243 to 596,418 _RS19820 EX31_RS19825: EX31_RS19825 - LacI family transcriptional regulator, at 596,703 to 597,764 _RS19825 Position (kb) 595 596 597Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 594.253 kb on - strandat 594.354 kb on + strand, within EX31_RS19815at 594.355 kb on - strand, within EX31_RS19815at 594.355 kb on - strand, within EX31_RS19815at 594.355 kb on - strand, within EX31_RS19815at 594.355 kb on - strand, within EX31_RS19815at 594.355 kb on - strand, within EX31_RS19815at 594.390 kb on + strand, within EX31_RS19815at 594.390 kb on + strand, within EX31_RS19815at 594.390 kb on + strand, within EX31_RS19815at 594.390 kb on + strand, within EX31_RS19815at 594.390 kb on + strand, within EX31_RS19815at 594.390 kb on + strand, within EX31_RS19815at 594.391 kb on - strand, within EX31_RS19815at 594.391 kb on - strand, within EX31_RS19815at 594.391 kb on - strand, within EX31_RS19815at 594.391 kb on - strand, within EX31_RS19815at 594.391 kb on - strand, within EX31_RS19815at 594.391 kb on - strand, within EX31_RS19815at 594.407 kb on - strand, within EX31_RS19815at 594.408 kb on + strand, within EX31_RS19815at 594.408 kb on + strand, within EX31_RS19815at 594.408 kb on + strand, within EX31_RS19815at 594.408 kb on + strand, within EX31_RS19815at 594.409 kb on - strand, within EX31_RS19815at 594.409 kb on - strand, within EX31_RS19815at 594.490 kb on - strand, within EX31_RS19815at 594.490 kb on - strand, within EX31_RS19815at 594.568 kb on + strand, within EX31_RS19815at 594.568 kb on + strand, within EX31_RS19815at 594.569 kb on - strand, within EX31_RS19815at 594.612 kb on + strand, within EX31_RS19815at 594.612 kb on + strand, within EX31_RS19815at 594.612 kb on + strand, within EX31_RS19815at 594.613 kb on - strand, within EX31_RS19815at 594.613 kb on - strand, within EX31_RS19815at 594.613 kb on - strand, within EX31_RS19815at 594.646 kb on + strand, within EX31_RS19815at 594.681 kb on + strand, within EX31_RS19815at 594.682 kb on - strand, within EX31_RS19815at 594.813 kb on + strand, within EX31_RS19815at 594.814 kb on - strand, within EX31_RS19815at 594.816 kb on + strand, within EX31_RS19815at 594.816 kb on + strand, within EX31_RS19815at 594.817 kb on - strand, within EX31_RS19815at 594.817 kb on - strand, within EX31_RS19815at 594.817 kb on - strand, within EX31_RS19815at 594.817 kb on - strand, within EX31_RS19815at 594.817 kb on - strand, within EX31_RS19815at 594.825 kb on + strand, within EX31_RS19815at 594.826 kb on - strand, within EX31_RS19815at 594.826 kb on - strand, within EX31_RS19815at 594.826 kb on - strand, within EX31_RS19815at 595.004 kb on + strand, within EX31_RS19815at 595.005 kb on - strand, within EX31_RS19815at 595.005 kb on - strand, within EX31_RS19815at 595.005 kb on - strand, within EX31_RS19815at 595.081 kb on - strand, within EX31_RS19815at 595.081 kb on - strand, within EX31_RS19815at 595.121 kb on - strand, within EX31_RS19815at 595.126 kb on + strand, within EX31_RS19815at 595.126 kb on + strand, within EX31_RS19815at 595.127 kb on - strand, within EX31_RS19815at 595.127 kb on - strand, within EX31_RS19815at 595.127 kb on - strand, within EX31_RS19815at 595.127 kb on - strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.131 kb on + strand, within EX31_RS19815at 595.132 kb on - strand, within EX31_RS19815at 595.132 kb on - strand, within EX31_RS19815at 595.132 kb on - strand, within EX31_RS19815at 595.132 kb on - strand, within EX31_RS19815at 595.132 kb on - strand, within EX31_RS19815at 595.132 kb on - strand, within EX31_RS19815at 595.135 kb on + strandat 595.136 kb on - strandat 595.136 kb on - strandat 595.215 kb on + strandat 595.215 kb on + strandat 595.216 kb on - strandat 595.216 kb on - strandat 595.255 kb on - strandat 595.422 kb on - strand, within EX31_RS19820at 595.534 kb on - strand, within EX31_RS19820at 595.534 kb on - strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.535 kb on + strand, within EX31_RS19820at 595.536 kb on - strand, within EX31_RS19820at 595.536 kb on - strand, within EX31_RS19820at 595.536 kb on - strand, within EX31_RS19820at 595.536 kb on - strand, within EX31_RS19820at 595.536 kb on - strand, within EX31_RS19820at 595.559 kb on + strand, within EX31_RS19820at 595.559 kb on + strand, within EX31_RS19820at 595.560 kb on - strand, within EX31_RS19820at 595.560 kb on - strand, within EX31_RS19820at 595.637 kb on + strand, within EX31_RS19820at 595.637 kb on + strand, within EX31_RS19820at 595.637 kb on + strand, within EX31_RS19820at 595.637 kb on + strand, within EX31_RS19820at 595.637 kb on + strand, within EX31_RS19820at 595.637 kb on + strand, within EX31_RS19820at 595.637 kb on + strand, within EX31_RS19820at 595.638 kb on - strand, within EX31_RS19820at 595.638 kb on - strand, within EX31_RS19820at 595.638 kb on - strand, within EX31_RS19820at 595.748 kb on + strand, within EX31_RS19820at 595.749 kb on - strand, within EX31_RS19820at 595.806 kb on + strand, within EX31_RS19820at 595.931 kb on + strand, within EX31_RS19820at 595.932 kb on - strand, within EX31_RS19820at 595.934 kb on + strand, within EX31_RS19820at 595.935 kb on - strand, within EX31_RS19820at 596.035 kb on - strand, within EX31_RS19820at 596.110 kb on + strand, within EX31_RS19820at 596.110 kb on + strand, within EX31_RS19820at 596.111 kb on - strand, within EX31_RS19820at 596.189 kb on + strand, within EX31_RS19820at 596.189 kb on + strand, within EX31_RS19820at 596.189 kb on + strand, within EX31_RS19820at 596.190 kb on - strand, within EX31_RS19820at 596.256 kb on - strand, within EX31_RS19820at 596.316 kb on + strandat 596.317 kb on - strandat 596.321 kb on - strandat 596.357 kb on - strandat 596.361 kb on - strandat 596.371 kb on - strandat 596.376 kb on + strandat 596.376 kb on + strandat 596.432 kb on - strandat 596.432 kb on - strandat 596.433 kb on + strandat 596.434 kb on - strandat 596.511 kb on + strandat 596.516 kb on - strandat 596.557 kb on + strandat 596.584 kb on - strandat 596.937 kb on + strand, within EX31_RS19825at 596.938 kb on - strand, within EX31_RS19825at 596.940 kb on + strand, within EX31_RS19825at 596.941 kb on - strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.992 kb on + strand, within EX31_RS19825at 596.993 kb on - strand, within EX31_RS19825at 596.993 kb on - strand, within EX31_RS19825at 596.993 kb on - strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.996 kb on + strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 596.997 kb on - strand, within EX31_RS19825at 597.086 kb on + strand, within EX31_RS19825at 597.125 kb on + strand, within EX31_RS19825at 597.125 kb on + strand, within EX31_RS19825at 597.125 kb on + strand, within EX31_RS19825at 597.125 kb on + strand, within EX31_RS19825at 597.139 kb on + strand, within EX31_RS19825at 597.139 kb on + strand, within EX31_RS19825at 597.195 kb on + strand, within EX31_RS19825at 597.195 kb on + strand, within EX31_RS19825at 597.222 kb on + strand, within EX31_RS19825at 597.222 kb on + strand, within EX31_RS19825at 597.222 kb on + strand, within EX31_RS19825at 597.223 kb on - strand, within EX31_RS19825at 597.253 kb on + strand, within EX31_RS19825at 597.253 kb on + strand, within EX31_RS19825at 597.399 kb on - strand, within EX31_RS19825at 597.399 kb on - strand, within EX31_RS19825at 597.408 kb on + strand, within EX31_RS19825at 597.408 kb on + strand, within EX31_RS19825at 597.408 kb on + strand, within EX31_RS19825at 597.408 kb on + strand, within EX31_RS19825at 597.409 kb on - strand, within EX31_RS19825

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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594,253 - +0.6
594,354 + EX31_RS19815 0.17 -0.7
594,355 - EX31_RS19815 0.17 +0.6
594,355 - EX31_RS19815 0.17 -1.9
594,355 - EX31_RS19815 0.17 -1.5
594,355 - EX31_RS19815 0.17 +1.9
594,355 - EX31_RS19815 0.17 +1.1
594,390 + EX31_RS19815 0.20 -1.3
594,390 + EX31_RS19815 0.20 +0.7
594,390 + EX31_RS19815 0.20 -0.7
594,390 + EX31_RS19815 0.20 -0.3
594,390 + EX31_RS19815 0.20 +2.1
594,390 + EX31_RS19815 0.20 -1.5
594,391 - EX31_RS19815 0.20 +1.7
594,391 - EX31_RS19815 0.20 -1.3
594,391 - EX31_RS19815 0.20 -1.0
594,391 - EX31_RS19815 0.20 +2.4
594,391 - EX31_RS19815 0.20 +0.4
594,391 - EX31_RS19815 0.20 -0.0
594,407 - EX31_RS19815 0.22 +0.7
594,408 + EX31_RS19815 0.22 -2.6
594,408 + EX31_RS19815 0.22 +1.3
594,408 + EX31_RS19815 0.22 -2.4
594,408 + EX31_RS19815 0.22 +2.1
594,409 - EX31_RS19815 0.22 -2.4
594,409 - EX31_RS19815 0.22 +0.8
594,490 - EX31_RS19815 0.30 +1.0
594,490 - EX31_RS19815 0.30 +1.2
594,568 + EX31_RS19815 0.37 -0.1
594,568 + EX31_RS19815 0.37 -1.3
594,569 - EX31_RS19815 0.37 +0.6
594,612 + EX31_RS19815 0.41 -1.3
594,612 + EX31_RS19815 0.41 -1.3
594,612 + EX31_RS19815 0.41 -0.3
594,613 - EX31_RS19815 0.41 +0.7
594,613 - EX31_RS19815 0.41 -1.7
594,613 - EX31_RS19815 0.41 -0.2
594,646 + EX31_RS19815 0.44 +1.3
594,681 + EX31_RS19815 0.48 +0.3
594,682 - EX31_RS19815 0.48 -3.0
594,813 + EX31_RS19815 0.60 -0.3
594,814 - EX31_RS19815 0.60 -1.0
594,816 + EX31_RS19815 0.60 +0.3
594,816 + EX31_RS19815 0.60 -1.9
594,817 - EX31_RS19815 0.60 -3.5
594,817 - EX31_RS19815 0.60 -0.0
594,817 - EX31_RS19815 0.60 -1.9
594,817 - EX31_RS19815 0.60 +1.3
594,817 - EX31_RS19815 0.60 -0.9
594,825 + EX31_RS19815 0.61 -2.0
594,826 - EX31_RS19815 0.61 +1.7
594,826 - EX31_RS19815 0.61 +0.2
594,826 - EX31_RS19815 0.61 -0.5
595,004 + EX31_RS19815 0.78 +1.6
595,005 - EX31_RS19815 0.78 +0.8
595,005 - EX31_RS19815 0.78 +1.3
595,005 - EX31_RS19815 0.78 +1.1
595,081 - EX31_RS19815 0.85 +1.8
595,081 - EX31_RS19815 0.85 +2.1
595,121 - EX31_RS19815 0.89 -0.5
595,126 + EX31_RS19815 0.89 +0.2
595,126 + EX31_RS19815 0.89 +1.1
595,127 - EX31_RS19815 0.89 -0.1
595,127 - EX31_RS19815 0.89 +1.0
595,127 - EX31_RS19815 0.89 -1.9
595,127 - EX31_RS19815 0.89 +0.8
595,131 + EX31_RS19815 0.90 +0.8
595,131 + EX31_RS19815 0.90 -2.2
595,131 + EX31_RS19815 0.90 +1.2
595,131 + EX31_RS19815 0.90 -2.2
595,131 + EX31_RS19815 0.90 +1.3
595,131 + EX31_RS19815 0.90 -0.3
595,131 + EX31_RS19815 0.90 -0.3
595,131 + EX31_RS19815 0.90 -1.7
595,131 + EX31_RS19815 0.90 +1.3
595,132 - EX31_RS19815 0.90 -2.3
595,132 - EX31_RS19815 0.90 -1.7
595,132 - EX31_RS19815 0.90 -0.6
595,132 - EX31_RS19815 0.90 -0.1
595,132 - EX31_RS19815 0.90 -0.4
595,132 - EX31_RS19815 0.90 +0.8
595,135 + -0.3
595,136 - +1.2
595,136 - +0.3
595,215 + +1.9
595,215 + +0.9
595,216 - -3.3
595,216 - +1.6
595,255 - -2.0
595,422 - EX31_RS19820 0.15 -2.0
595,534 - EX31_RS19820 0.25 -0.9
595,534 - EX31_RS19820 0.25 +0.3
595,535 + EX31_RS19820 0.25 -1.3
595,535 + EX31_RS19820 0.25 -4.0
595,535 + EX31_RS19820 0.25 +2.6
595,535 + EX31_RS19820 0.25 +1.0
595,535 + EX31_RS19820 0.25 -1.5
595,535 + EX31_RS19820 0.25 -0.3
595,535 + EX31_RS19820 0.25 -2.8
595,535 + EX31_RS19820 0.25 +0.7
595,535 + EX31_RS19820 0.25 +0.3
595,535 + EX31_RS19820 0.25 -1.7
595,535 + EX31_RS19820 0.25 -2.4
595,535 + EX31_RS19820 0.25 -1.0
595,535 + EX31_RS19820 0.25 -1.3
595,535 + EX31_RS19820 0.25 -2.2
595,536 - EX31_RS19820 0.25 +0.8
595,536 - EX31_RS19820 0.25 -3.3
595,536 - EX31_RS19820 0.25 +0.1
595,536 - EX31_RS19820 0.25 -3.0
595,536 - EX31_RS19820 0.25 +1.7
595,559 + EX31_RS19820 0.27 -2.2
595,559 + EX31_RS19820 0.27 -2.2
595,560 - EX31_RS19820 0.27 +1.6
595,560 - EX31_RS19820 0.27 +1.3
595,637 + EX31_RS19820 0.34 -1.0
595,637 + EX31_RS19820 0.34 -1.5
595,637 + EX31_RS19820 0.34 +2.1
595,637 + EX31_RS19820 0.34 -1.3
595,637 + EX31_RS19820 0.34 -0.3
595,637 + EX31_RS19820 0.34 -2.4
595,637 + EX31_RS19820 0.34 -1.7
595,638 - EX31_RS19820 0.34 -2.2
595,638 - EX31_RS19820 0.34 +1.9
595,638 - EX31_RS19820 0.34 -1.5
595,748 + EX31_RS19820 0.43 -1.7
595,749 - EX31_RS19820 0.43 -0.3
595,806 + EX31_RS19820 0.48 -0.3
595,931 + EX31_RS19820 0.59 +1.3
595,932 - EX31_RS19820 0.59 -2.2
595,934 + EX31_RS19820 0.59 +1.5
595,935 - EX31_RS19820 0.59 +1.6
596,035 - EX31_RS19820 0.67 +0.1
596,110 + EX31_RS19820 0.74 +1.1
596,110 + EX31_RS19820 0.74 -1.0
596,111 - EX31_RS19820 0.74 -0.3
596,189 + EX31_RS19820 0.80 -0.7
596,189 + EX31_RS19820 0.80 -1.4
596,189 + EX31_RS19820 0.80 +0.9
596,190 - EX31_RS19820 0.81 +1.2
596,256 - EX31_RS19820 0.86 +1.4
596,316 + -1.7
596,317 - +1.5
596,321 - -1.5
596,357 - +2.2
596,361 - +0.6
596,371 - -0.1
596,376 + +0.3
596,376 + -0.4
596,432 - -1.1
596,432 - -0.7
596,433 + -1.0
596,434 - -1.7
596,511 + -2.4
596,516 - -1.0
596,557 + +0.4
596,584 - +0.2
596,937 + EX31_RS19825 0.22 -3.2
596,938 - EX31_RS19825 0.22 +1.6
596,940 + EX31_RS19825 0.22 -1.0
596,941 - EX31_RS19825 0.22 +1.1
596,992 + EX31_RS19825 0.27 -2.6
596,992 + EX31_RS19825 0.27 -0.3
596,992 + EX31_RS19825 0.27 -0.4
596,992 + EX31_RS19825 0.27 +1.2
596,992 + EX31_RS19825 0.27 -1.7
596,992 + EX31_RS19825 0.27 -2.6
596,993 - EX31_RS19825 0.27 -0.3
596,993 - EX31_RS19825 0.27 +0.6
596,993 - EX31_RS19825 0.27 -2.5
596,996 + EX31_RS19825 0.28 -0.4
596,996 + EX31_RS19825 0.28 -1.7
596,996 + EX31_RS19825 0.28 -4.3
596,996 + EX31_RS19825 0.28 +1.0
596,996 + EX31_RS19825 0.28 -2.5
596,996 + EX31_RS19825 0.28 -2.0
596,997 - EX31_RS19825 0.28 +1.5
596,997 - EX31_RS19825 0.28 +0.3
596,997 - EX31_RS19825 0.28 +3.8
596,997 - EX31_RS19825 0.28 -0.1
596,997 - EX31_RS19825 0.28 +0.8
597,086 + EX31_RS19825 0.36 -1.0
597,125 + EX31_RS19825 0.40 +2.1
597,125 + EX31_RS19825 0.40 +0.7
597,125 + EX31_RS19825 0.40 -0.0
597,125 + EX31_RS19825 0.40 +2.1
597,139 + EX31_RS19825 0.41 -0.7
597,139 + EX31_RS19825 0.41 -2.4
597,195 + EX31_RS19825 0.46 -0.6
597,195 + EX31_RS19825 0.46 -0.2
597,222 + EX31_RS19825 0.49 -1.9
597,222 + EX31_RS19825 0.49 -0.7
597,222 + EX31_RS19825 0.49 +1.3
597,223 - EX31_RS19825 0.49 -0.7
597,253 + EX31_RS19825 0.52 +0.8
597,253 + EX31_RS19825 0.52 -1.5
597,399 - EX31_RS19825 0.66 -2.2
597,399 - EX31_RS19825 0.66 -1.5
597,408 + EX31_RS19825 0.66 -0.3
597,408 + EX31_RS19825 0.66 -2.7
597,408 + EX31_RS19825 0.66 -1.5
597,408 + EX31_RS19825 0.66 -1.9
597,409 - EX31_RS19825 0.66 -2.5

Or see this region's nucleotide sequence