Strain Fitness in Rahnella sp. WP5 around EX31_RS19340

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19335 and EX31_RS19340 overlap by 16 nucleotidesEX31_RS19340 and EX31_RS19345 overlap by 1 nucleotidesEX31_RS19345 and EX31_RS19350 overlap by 14 nucleotides EX31_RS19335: EX31_RS19335 - o-succinylbenzoate--CoA ligase, at 492,761 to 494,134 _RS19335 EX31_RS19340: EX31_RS19340 - o-succinylbenzoate synthase, at 494,119 to 495,120 _RS19340 EX31_RS19345: EX31_RS19345 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 495,120 to 495,977 _RS19345 EX31_RS19350: EX31_RS19350 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 495,964 to 496,761 _RS19350 Position (kb) 494 495 496Strain fitness (log2 ratio) -2 -1 0 1 2 3at 493.157 kb on + strand, within EX31_RS19335at 493.158 kb on - strand, within EX31_RS19335at 493.158 kb on - strand, within EX31_RS19335at 493.158 kb on - strand, within EX31_RS19335at 493.177 kb on - strand, within EX31_RS19335at 493.189 kb on + strand, within EX31_RS19335at 493.189 kb on + strand, within EX31_RS19335at 493.190 kb on - strand, within EX31_RS19335at 493.247 kb on + strand, within EX31_RS19335at 493.247 kb on + strand, within EX31_RS19335at 493.334 kb on + strand, within EX31_RS19335at 493.334 kb on + strand, within EX31_RS19335at 493.335 kb on - strand, within EX31_RS19335at 493.335 kb on - strand, within EX31_RS19335at 493.589 kb on + strand, within EX31_RS19335at 493.597 kb on + strand, within EX31_RS19335at 493.597 kb on + strand, within EX31_RS19335at 493.597 kb on + strand, within EX31_RS19335at 493.603 kb on + strand, within EX31_RS19335at 493.663 kb on + strand, within EX31_RS19335at 493.663 kb on + strand, within EX31_RS19335at 493.663 kb on + strand, within EX31_RS19335at 493.663 kb on + strand, within EX31_RS19335at 493.664 kb on - strand, within EX31_RS19335at 493.664 kb on - strand, within EX31_RS19335at 493.720 kb on + strand, within EX31_RS19335at 493.783 kb on + strand, within EX31_RS19335at 493.817 kb on + strand, within EX31_RS19335at 493.856 kb on + strand, within EX31_RS19335at 493.856 kb on + strand, within EX31_RS19335at 493.856 kb on + strand, within EX31_RS19335at 493.856 kb on + strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.857 kb on - strand, within EX31_RS19335at 493.908 kb on - strand, within EX31_RS19335at 493.921 kb on - strand, within EX31_RS19335at 494.027 kb on + strandat 494.050 kb on + strandat 494.050 kb on + strandat 494.051 kb on - strandat 494.428 kb on - strand, within EX31_RS19340at 494.649 kb on + strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.650 kb on - strand, within EX31_RS19340at 494.750 kb on + strand, within EX31_RS19340at 494.821 kb on + strand, within EX31_RS19340at 494.863 kb on + strand, within EX31_RS19340at 494.863 kb on + strand, within EX31_RS19340at 494.967 kb on + strand, within EX31_RS19340at 494.967 kb on + strand, within EX31_RS19340at 494.968 kb on - strand, within EX31_RS19340at 494.968 kb on - strand, within EX31_RS19340at 494.968 kb on - strand, within EX31_RS19340at 495.096 kb on - strandat 495.122 kb on - strandat 495.128 kb on + strandat 495.129 kb on - strandat 495.129 kb on - strandat 495.129 kb on - strandat 495.205 kb on + strandat 495.205 kb on + strandat 495.205 kb on + strandat 495.205 kb on + strandat 495.205 kb on + strandat 495.205 kb on + strandat 495.205 kb on + strandat 495.206 kb on - strand, within EX31_RS19345at 495.206 kb on - strand, within EX31_RS19345at 495.206 kb on - strand, within EX31_RS19345at 495.206 kb on - strand, within EX31_RS19345at 495.366 kb on + strand, within EX31_RS19345at 495.366 kb on + strand, within EX31_RS19345at 495.366 kb on + strand, within EX31_RS19345at 495.367 kb on - strand, within EX31_RS19345at 495.367 kb on - strand, within EX31_RS19345at 495.367 kb on - strand, within EX31_RS19345at 495.410 kb on - strand, within EX31_RS19345at 495.410 kb on - strand, within EX31_RS19345at 495.468 kb on - strand, within EX31_RS19345at 495.468 kb on - strand, within EX31_RS19345at 495.468 kb on - strand, within EX31_RS19345at 495.469 kb on + strand, within EX31_RS19345at 495.469 kb on + strand, within EX31_RS19345at 495.469 kb on + strand, within EX31_RS19345at 495.469 kb on + strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.470 kb on - strand, within EX31_RS19345at 495.533 kb on + strand, within EX31_RS19345at 495.563 kb on + strand, within EX31_RS19345at 495.563 kb on + strand, within EX31_RS19345at 495.564 kb on - strand, within EX31_RS19345at 495.564 kb on - strand, within EX31_RS19345at 495.564 kb on - strand, within EX31_RS19345at 495.564 kb on - strand, within EX31_RS19345at 495.564 kb on - strand, within EX31_RS19345at 495.872 kb on + strand, within EX31_RS19345at 495.905 kb on + strandat 495.906 kb on - strandat 495.906 kb on - strandat 495.906 kb on - strandat 495.924 kb on - strandat 495.924 kb on - strandat 495.949 kb on + strandat 495.970 kb on + strandat 495.971 kb on - strandat 496.005 kb on + strandat 496.005 kb on + strandat 496.005 kb on + strandat 496.006 kb on - strandat 496.008 kb on + strandat 496.008 kb on + strandat 496.008 kb on + strandat 496.084 kb on + strand, within EX31_RS19350at 496.084 kb on + strand, within EX31_RS19350at 496.117 kb on - strand, within EX31_RS19350

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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493,157 + EX31_RS19335 0.29 -0.3
493,158 - EX31_RS19335 0.29 +0.4
493,158 - EX31_RS19335 0.29 +1.1
493,158 - EX31_RS19335 0.29 -2.6
493,177 - EX31_RS19335 0.30 +2.0
493,189 + EX31_RS19335 0.31 -2.2
493,189 + EX31_RS19335 0.31 -1.3
493,190 - EX31_RS19335 0.31 +0.8
493,247 + EX31_RS19335 0.35 -1.7
493,247 + EX31_RS19335 0.35 -1.1
493,334 + EX31_RS19335 0.42 +2.5
493,334 + EX31_RS19335 0.42 -0.9
493,335 - EX31_RS19335 0.42 +2.8
493,335 - EX31_RS19335 0.42 -1.9
493,589 + EX31_RS19335 0.60 -1.1
493,597 + EX31_RS19335 0.61 -1.5
493,597 + EX31_RS19335 0.61 -2.3
493,597 + EX31_RS19335 0.61 -0.5
493,603 + EX31_RS19335 0.61 -2.5
493,663 + EX31_RS19335 0.66 +1.8
493,663 + EX31_RS19335 0.66 -0.6
493,663 + EX31_RS19335 0.66 -0.7
493,663 + EX31_RS19335 0.66 -1.3
493,664 - EX31_RS19335 0.66 -1.9
493,664 - EX31_RS19335 0.66 +0.3
493,720 + EX31_RS19335 0.70 -0.5
493,783 + EX31_RS19335 0.74 -2.4
493,817 + EX31_RS19335 0.77 -2.1
493,856 + EX31_RS19335 0.80 -1.1
493,856 + EX31_RS19335 0.80 +1.3
493,856 + EX31_RS19335 0.80 +1.5
493,856 + EX31_RS19335 0.80 +0.6
493,857 - EX31_RS19335 0.80 +1.4
493,857 - EX31_RS19335 0.80 -0.7
493,857 - EX31_RS19335 0.80 +0.5
493,857 - EX31_RS19335 0.80 -0.7
493,857 - EX31_RS19335 0.80 +1.4
493,908 - EX31_RS19335 0.83 +2.4
493,921 - EX31_RS19335 0.84 -0.2
494,027 + -1.9
494,050 + -0.2
494,050 + +1.5
494,051 - -2.1
494,428 - EX31_RS19340 0.31 +0.6
494,649 + EX31_RS19340 0.53 -2.7
494,650 - EX31_RS19340 0.53 -2.3
494,650 - EX31_RS19340 0.53 +0.9
494,650 - EX31_RS19340 0.53 -2.4
494,650 - EX31_RS19340 0.53 -2.2
494,650 - EX31_RS19340 0.53 -2.3
494,750 + EX31_RS19340 0.63 +1.6
494,821 + EX31_RS19340 0.70 +2.4
494,863 + EX31_RS19340 0.74 +1.3
494,863 + EX31_RS19340 0.74 -1.5
494,967 + EX31_RS19340 0.85 +0.4
494,967 + EX31_RS19340 0.85 +0.3
494,968 - EX31_RS19340 0.85 +1.7
494,968 - EX31_RS19340 0.85 -1.7
494,968 - EX31_RS19340 0.85 -2.1
495,096 - -1.9
495,122 - +1.8
495,128 + +1.9
495,129 - +0.9
495,129 - +0.4
495,129 - +0.3
495,205 + +2.6
495,205 + -1.3
495,205 + +1.3
495,205 + +1.6
495,205 + +0.4
495,205 + -1.5
495,205 + -2.4
495,206 - EX31_RS19345 0.10 +2.0
495,206 - EX31_RS19345 0.10 +1.3
495,206 - EX31_RS19345 0.10 +0.9
495,206 - EX31_RS19345 0.10 -2.2
495,366 + EX31_RS19345 0.29 -1.0
495,366 + EX31_RS19345 0.29 -1.3
495,366 + EX31_RS19345 0.29 +0.5
495,367 - EX31_RS19345 0.29 -0.3
495,367 - EX31_RS19345 0.29 -0.6
495,367 - EX31_RS19345 0.29 -2.2
495,410 - EX31_RS19345 0.34 +1.3
495,410 - EX31_RS19345 0.34 +0.2
495,468 - EX31_RS19345 0.41 +0.5
495,468 - EX31_RS19345 0.41 -0.8
495,468 - EX31_RS19345 0.41 -0.0
495,469 + EX31_RS19345 0.41 -1.5
495,469 + EX31_RS19345 0.41 +3.3
495,469 + EX31_RS19345 0.41 +1.1
495,469 + EX31_RS19345 0.41 -2.1
495,470 - EX31_RS19345 0.41 +0.1
495,470 - EX31_RS19345 0.41 -1.7
495,470 - EX31_RS19345 0.41 +0.8
495,470 - EX31_RS19345 0.41 -2.2
495,470 - EX31_RS19345 0.41 -0.3
495,470 - EX31_RS19345 0.41 -0.3
495,470 - EX31_RS19345 0.41 +1.5
495,470 - EX31_RS19345 0.41 +1.0
495,470 - EX31_RS19345 0.41 +1.3
495,470 - EX31_RS19345 0.41 -2.6
495,470 - EX31_RS19345 0.41 -1.7
495,470 - EX31_RS19345 0.41 +0.6
495,470 - EX31_RS19345 0.41 +2.3
495,533 + EX31_RS19345 0.48 -1.5
495,563 + EX31_RS19345 0.52 +2.5
495,563 + EX31_RS19345 0.52 +1.5
495,564 - EX31_RS19345 0.52 -1.1
495,564 - EX31_RS19345 0.52 -2.6
495,564 - EX31_RS19345 0.52 -0.7
495,564 - EX31_RS19345 0.52 -1.1
495,564 - EX31_RS19345 0.52 +0.3
495,872 + EX31_RS19345 0.88 -0.7
495,905 + +0.6
495,906 - +1.3
495,906 - +2.3
495,906 - +1.0
495,924 - -2.6
495,924 - +1.3
495,949 + +1.9
495,970 + -2.2
495,971 - +1.1
496,005 + +0.3
496,005 + -0.3
496,005 + +2.3
496,006 - -0.7
496,008 + +2.9
496,008 + -2.3
496,008 + -1.3
496,084 + EX31_RS19350 0.15 +1.9
496,084 + EX31_RS19350 0.15 -2.2
496,117 - EX31_RS19350 0.19 -2.2

Or see this region's nucleotide sequence