Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19005 and EX31_RS19010 are separated by 112 nucleotides EX31_RS19010 and EX31_RS19015 are separated by 301 nucleotides
EX31_RS19005: EX31_RS19005 - peptidase M3, at 389,233 to 391,095
_RS19005
EX31_RS19010: EX31_RS19010 - alkylphosphonate utilization protein, at 391,208 to 391,549
_RS19010
EX31_RS19015: EX31_RS19015 - DNA-binding protein YbiB, at 391,851 to 392,813
_RS19015
Position (kb) 391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 390.284 kb on - strand, within EX31_RS19005 at 390.317 kb on + strand, within EX31_RS19005 at 390.318 kb on - strand, within EX31_RS19005 at 390.469 kb on + strand, within EX31_RS19005 at 390.498 kb on + strand, within EX31_RS19005 at 390.498 kb on + strand, within EX31_RS19005 at 390.507 kb on + strand, within EX31_RS19005 at 390.507 kb on + strand, within EX31_RS19005 at 390.508 kb on - strand, within EX31_RS19005 at 390.518 kb on + strand, within EX31_RS19005 at 390.518 kb on + strand, within EX31_RS19005 at 390.519 kb on - strand, within EX31_RS19005 at 390.671 kb on - strand, within EX31_RS19005 at 390.671 kb on - strand, within EX31_RS19005 at 390.671 kb on - strand, within EX31_RS19005 at 390.671 kb on - strand, within EX31_RS19005 at 390.671 kb on - strand, within EX31_RS19005 at 390.671 kb on - strand, within EX31_RS19005 at 390.735 kb on + strand, within EX31_RS19005 at 390.735 kb on + strand, within EX31_RS19005 at 390.736 kb on - strand, within EX31_RS19005 at 390.736 kb on - strand, within EX31_RS19005 at 390.736 kb on - strand, within EX31_RS19005 at 390.736 kb on - strand, within EX31_RS19005 at 390.736 kb on - strand, within EX31_RS19005 at 390.736 kb on - strand, within EX31_RS19005 at 390.736 kb on - strand, within EX31_RS19005 at 390.769 kb on - strand, within EX31_RS19005 at 390.795 kb on + strand, within EX31_RS19005 at 390.854 kb on - strand, within EX31_RS19005 at 390.911 kb on - strand at 391.005 kb on + strand at 391.005 kb on + strand at 391.006 kb on - strand at 391.007 kb on + strand at 391.007 kb on + strand at 391.007 kb on + strand at 391.007 kb on + strand at 391.007 kb on + strand at 391.007 kb on + strand at 391.007 kb on + strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.008 kb on - strand at 391.076 kb on + strand at 391.126 kb on + strand at 391.126 kb on + strand at 391.126 kb on + strand at 391.139 kb on + strand at 391.139 kb on + strand at 391.139 kb on + strand at 391.140 kb on - strand at 391.140 kb on - strand at 391.140 kb on - strand at 391.140 kb on - strand at 391.422 kb on - strand, within EX31_RS19010 at 391.422 kb on - strand, within EX31_RS19010 at 391.422 kb on - strand, within EX31_RS19010 at 391.484 kb on - strand, within EX31_RS19010 at 391.484 kb on - strand, within EX31_RS19010 at 391.484 kb on - strand, within EX31_RS19010 at 391.484 kb on - strand, within EX31_RS19010 at 391.704 kb on - strand at 391.758 kb on + strand at 391.759 kb on - strand at 391.777 kb on + strand at 391.777 kb on + strand at 391.777 kb on + strand at 391.778 kb on - strand at 391.788 kb on - strand at 391.788 kb on - strand at 391.807 kb on + strand at 391.808 kb on - strand at 391.811 kb on - strand at 391.889 kb on + strand at 391.984 kb on + strand, within EX31_RS19015 at 391.984 kb on + strand, within EX31_RS19015 at 391.984 kb on + strand, within EX31_RS19015 at 391.984 kb on + strand, within EX31_RS19015 at 391.985 kb on - strand, within EX31_RS19015 at 391.985 kb on - strand, within EX31_RS19015 at 391.985 kb on - strand, within EX31_RS19015 at 391.985 kb on - strand, within EX31_RS19015 at 392.001 kb on + strand, within EX31_RS19015 at 392.001 kb on + strand, within EX31_RS19015 at 392.002 kb on - strand, within EX31_RS19015 at 392.055 kb on + strand, within EX31_RS19015 at 392.113 kb on + strand, within EX31_RS19015 at 392.113 kb on + strand, within EX31_RS19015 at 392.113 kb on + strand, within EX31_RS19015 at 392.114 kb on - strand, within EX31_RS19015 at 392.191 kb on + strand, within EX31_RS19015 at 392.191 kb on + strand, within EX31_RS19015 at 392.249 kb on + strand, within EX31_RS19015 at 392.249 kb on + strand, within EX31_RS19015 at 392.249 kb on + strand, within EX31_RS19015 at 392.249 kb on + strand, within EX31_RS19015 at 392.250 kb on - strand, within EX31_RS19015 at 392.250 kb on - strand, within EX31_RS19015 at 392.250 kb on - strand, within EX31_RS19015 at 392.250 kb on - strand, within EX31_RS19015 at 392.264 kb on + strand, within EX31_RS19015 at 392.332 kb on - strand, within EX31_RS19015 at 392.537 kb on + strand, within EX31_RS19015 at 392.538 kb on - strand, within EX31_RS19015 at 392.538 kb on - strand, within EX31_RS19015
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 390,284 - EX31_RS19005 0.56 +0.3 390,317 + EX31_RS19005 0.58 +0.9 390,318 - EX31_RS19005 0.58 -0.7 390,469 + EX31_RS19005 0.66 -1.9 390,498 + EX31_RS19005 0.68 +1.4 390,498 + EX31_RS19005 0.68 -1.1 390,507 + EX31_RS19005 0.68 -0.3 390,507 + EX31_RS19005 0.68 +0.3 390,508 - EX31_RS19005 0.68 +0.7 390,518 + EX31_RS19005 0.69 +0.8 390,518 + EX31_RS19005 0.69 -0.1 390,519 - EX31_RS19005 0.69 -2.2 390,671 - EX31_RS19005 0.77 +0.3 390,671 - EX31_RS19005 0.77 +0.2 390,671 - EX31_RS19005 0.77 +2.9 390,671 - EX31_RS19005 0.77 +1.4 390,671 - EX31_RS19005 0.77 -0.7 390,671 - EX31_RS19005 0.77 +3.9 390,735 + EX31_RS19005 0.81 -0.7 390,735 + EX31_RS19005 0.81 -1.1 390,736 - EX31_RS19005 0.81 -2.2 390,736 - EX31_RS19005 0.81 +0.9 390,736 - EX31_RS19005 0.81 -0.7 390,736 - EX31_RS19005 0.81 +0.3 390,736 - EX31_RS19005 0.81 -0.8 390,736 - EX31_RS19005 0.81 +1.5 390,736 - EX31_RS19005 0.81 -2.4 390,769 - EX31_RS19005 0.82 -1.3 390,795 + EX31_RS19005 0.84 -2.2 390,854 - EX31_RS19005 0.87 -1.1 390,911 - +1.1 391,005 + +1.5 391,005 + +0.7 391,006 - -0.1 391,007 + +1.5 391,007 + +1.3 391,007 + +0.3 391,007 + -0.1 391,007 + +0.3 391,007 + -2.1 391,007 + -1.9 391,008 - -2.5 391,008 - +2.7 391,008 - +2.1 391,008 - -0.8 391,008 - -0.7 391,008 - -0.6 391,008 - +1.1 391,008 - +1.0 391,008 - -2.3 391,008 - +1.0 391,076 + -2.8 391,126 + -2.3 391,126 + -0.3 391,126 + -0.3 391,139 + +0.9 391,139 + +0.3 391,139 + +1.9 391,140 - +0.8 391,140 - +3.6 391,140 - +2.3 391,140 - +0.8 391,422 - EX31_RS19010 0.63 -3.1 391,422 - EX31_RS19010 0.63 -0.7 391,422 - EX31_RS19010 0.63 -1.3 391,484 - EX31_RS19010 0.81 -2.5 391,484 - EX31_RS19010 0.81 -1.5 391,484 - EX31_RS19010 0.81 -1.1 391,484 - EX31_RS19010 0.81 +0.9 391,704 - -1.5 391,758 + -1.3 391,759 - -0.3 391,777 + -2.1 391,777 + -2.4 391,777 + -0.1 391,778 - -2.5 391,788 - -0.6 391,788 - -2.2 391,807 + -0.0 391,808 - +0.6 391,811 - +2.3 391,889 + +2.1 391,984 + EX31_RS19015 0.14 +2.3 391,984 + EX31_RS19015 0.14 +1.3 391,984 + EX31_RS19015 0.14 -0.7 391,984 + EX31_RS19015 0.14 +0.3 391,985 - EX31_RS19015 0.14 -1.3 391,985 - EX31_RS19015 0.14 +1.5 391,985 - EX31_RS19015 0.14 -0.3 391,985 - EX31_RS19015 0.14 +0.9 392,001 + EX31_RS19015 0.16 +1.4 392,001 + EX31_RS19015 0.16 +1.3 392,002 - EX31_RS19015 0.16 +0.5 392,055 + EX31_RS19015 0.21 +2.9 392,113 + EX31_RS19015 0.27 -2.7 392,113 + EX31_RS19015 0.27 +1.5 392,113 + EX31_RS19015 0.27 +0.4 392,114 - EX31_RS19015 0.27 -0.3 392,191 + EX31_RS19015 0.35 +2.1 392,191 + EX31_RS19015 0.35 +1.1 392,249 + EX31_RS19015 0.41 -1.6 392,249 + EX31_RS19015 0.41 +1.7 392,249 + EX31_RS19015 0.41 +0.7 392,249 + EX31_RS19015 0.41 -1.9 392,250 - EX31_RS19015 0.41 -0.7 392,250 - EX31_RS19015 0.41 -2.1 392,250 - EX31_RS19015 0.41 +2.2 392,250 - EX31_RS19015 0.41 +1.4 392,264 + EX31_RS19015 0.43 +1.9 392,332 - EX31_RS19015 0.50 +3.2 392,537 + EX31_RS19015 0.71 +0.9 392,538 - EX31_RS19015 0.71 +0.2 392,538 - EX31_RS19015 0.71 -2.6
Or see this region's nucleotide sequence