Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18995 and EX31_RS19000 are separated by 203 nucleotides EX31_RS19000 and EX31_RS19005 are separated by 84 nucleotides
EX31_RS18995: EX31_RS18995 - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 387,347 to 388,315
_RS18995
EX31_RS19000: EX31_RS19000 - flavin reductase family protein, at 388,519 to 389,148
_RS19000
EX31_RS19005: EX31_RS19005 - peptidase M3, at 389,233 to 391,095
_RS19005
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 387.532 kb on - strand, within EX31_RS18995 at 387.637 kb on + strand, within EX31_RS18995 at 387.637 kb on + strand, within EX31_RS18995 at 387.638 kb on - strand, within EX31_RS18995 at 387.736 kb on + strand, within EX31_RS18995 at 387.737 kb on - strand, within EX31_RS18995 at 387.753 kb on + strand, within EX31_RS18995 at 387.788 kb on - strand, within EX31_RS18995 at 387.788 kb on - strand, within EX31_RS18995 at 387.788 kb on - strand, within EX31_RS18995 at 387.929 kb on - strand, within EX31_RS18995 at 387.929 kb on - strand, within EX31_RS18995 at 387.940 kb on + strand, within EX31_RS18995 at 387.940 kb on + strand, within EX31_RS18995 at 387.940 kb on + strand, within EX31_RS18995 at 387.940 kb on + strand, within EX31_RS18995 at 387.940 kb on + strand, within EX31_RS18995 at 387.940 kb on + strand, within EX31_RS18995 at 387.940 kb on + strand, within EX31_RS18995 at 387.941 kb on - strand, within EX31_RS18995 at 388.040 kb on - strand, within EX31_RS18995 at 388.040 kb on - strand, within EX31_RS18995 at 388.041 kb on + strand, within EX31_RS18995 at 388.041 kb on + strand, within EX31_RS18995 at 388.042 kb on - strand, within EX31_RS18995 at 388.075 kb on - strand, within EX31_RS18995 at 388.075 kb on - strand, within EX31_RS18995 at 388.354 kb on + strand at 388.354 kb on + strand at 388.373 kb on + strand at 388.373 kb on + strand at 388.373 kb on + strand at 388.374 kb on - strand at 388.374 kb on - strand at 388.374 kb on - strand at 388.378 kb on - strand at 388.395 kb on + strand at 388.396 kb on - strand at 388.443 kb on + strand at 388.444 kb on - strand at 388.464 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.478 kb on + strand at 388.479 kb on - strand at 388.479 kb on - strand at 388.479 kb on - strand at 388.479 kb on - strand at 388.487 kb on + strand at 388.488 kb on - strand at 388.488 kb on - strand at 388.488 kb on - strand at 388.501 kb on + strand at 388.501 kb on + strand at 388.502 kb on - strand at 388.502 kb on - strand at 388.537 kb on + strand at 388.538 kb on - strand at 388.541 kb on - strand at 388.541 kb on - strand at 388.541 kb on - strand at 388.543 kb on + strand at 388.543 kb on + strand at 388.544 kb on - strand at 388.544 kb on - strand at 388.661 kb on - strand, within EX31_RS19000 at 388.661 kb on - strand, within EX31_RS19000 at 388.661 kb on - strand, within EX31_RS19000 at 388.684 kb on + strand, within EX31_RS19000 at 388.741 kb on - strand, within EX31_RS19000 at 388.938 kb on + strand, within EX31_RS19000 at 388.938 kb on + strand, within EX31_RS19000 at 388.938 kb on + strand, within EX31_RS19000 at 388.938 kb on + strand, within EX31_RS19000 at 388.938 kb on + strand, within EX31_RS19000 at 388.938 kb on + strand, within EX31_RS19000 at 388.939 kb on - strand, within EX31_RS19000 at 388.939 kb on - strand, within EX31_RS19000 at 388.939 kb on - strand, within EX31_RS19000 at 388.975 kb on - strand, within EX31_RS19000 at 389.041 kb on + strand, within EX31_RS19000 at 389.069 kb on + strand, within EX31_RS19000 at 389.095 kb on + strand at 389.096 kb on - strand at 389.158 kb on + strand at 389.158 kb on + strand at 389.158 kb on + strand at 389.159 kb on - strand at 389.206 kb on - strand at 389.214 kb on + strand at 389.215 kb on - strand at 389.215 kb on - strand at 389.215 kb on - strand at 389.235 kb on - strand at 389.235 kb on - strand at 389.246 kb on + strand at 389.247 kb on - strand at 389.247 kb on - strand at 389.457 kb on - strand, within EX31_RS19005 at 389.497 kb on - strand, within EX31_RS19005 at 389.497 kb on - strand, within EX31_RS19005 at 389.532 kb on - strand, within EX31_RS19005 at 389.577 kb on - strand, within EX31_RS19005 at 389.721 kb on + strand, within EX31_RS19005 at 389.722 kb on - strand, within EX31_RS19005 at 389.807 kb on + strand, within EX31_RS19005 at 389.808 kb on - strand, within EX31_RS19005 at 389.866 kb on - strand, within EX31_RS19005 at 389.866 kb on - strand, within EX31_RS19005 at 389.919 kb on - strand, within EX31_RS19005 at 389.982 kb on - strand, within EX31_RS19005 at 389.982 kb on - strand, within EX31_RS19005 at 390.036 kb on + strand, within EX31_RS19005 at 390.037 kb on - strand, within EX31_RS19005 at 390.037 kb on - strand, within EX31_RS19005 at 390.078 kb on + strand, within EX31_RS19005 at 390.078 kb on + strand, within EX31_RS19005 at 390.079 kb on - strand, within EX31_RS19005 at 390.135 kb on + strand, within EX31_RS19005 at 390.135 kb on + strand, within EX31_RS19005 at 390.136 kb on - strand, within EX31_RS19005 at 390.136 kb on - strand, within EX31_RS19005
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 387,532 - EX31_RS18995 0.19 -1.9 387,637 + EX31_RS18995 0.30 -1.3 387,637 + EX31_RS18995 0.30 +1.3 387,638 - EX31_RS18995 0.30 -2.1 387,736 + EX31_RS18995 0.40 -1.3 387,737 - EX31_RS18995 0.40 +3.6 387,753 + EX31_RS18995 0.42 +0.9 387,788 - EX31_RS18995 0.46 -1.7 387,788 - EX31_RS18995 0.46 -2.6 387,788 - EX31_RS18995 0.46 -1.3 387,929 - EX31_RS18995 0.60 +1.8 387,929 - EX31_RS18995 0.60 -0.0 387,940 + EX31_RS18995 0.61 -0.7 387,940 + EX31_RS18995 0.61 +1.0 387,940 + EX31_RS18995 0.61 +2.0 387,940 + EX31_RS18995 0.61 +0.4 387,940 + EX31_RS18995 0.61 -1.5 387,940 + EX31_RS18995 0.61 +1.9 387,940 + EX31_RS18995 0.61 -2.6 387,941 - EX31_RS18995 0.61 -1.3 388,040 - EX31_RS18995 0.72 -0.6 388,040 - EX31_RS18995 0.72 -1.9 388,041 + EX31_RS18995 0.72 -2.5 388,041 + EX31_RS18995 0.72 -1.1 388,042 - EX31_RS18995 0.72 +4.2 388,075 - EX31_RS18995 0.75 -0.5 388,075 - EX31_RS18995 0.75 +1.9 388,354 + -0.1 388,354 + +0.3 388,373 + +0.5 388,373 + +2.0 388,373 + -0.7 388,374 - -0.7 388,374 - +1.8 388,374 - -0.3 388,378 - -2.1 388,395 + -0.2 388,396 - -0.7 388,443 + -1.3 388,444 - -1.1 388,464 + -1.5 388,478 + +0.9 388,478 + +1.3 388,478 + +0.3 388,478 + -3.0 388,478 + +0.6 388,478 + -0.2 388,478 + -2.1 388,478 + +0.5 388,478 + +2.0 388,478 + -2.6 388,479 - -1.9 388,479 - -1.3 388,479 - -1.1 388,479 - -1.9 388,487 + +2.9 388,488 - -1.3 388,488 - -1.5 388,488 - -1.1 388,501 + +1.6 388,501 + -0.3 388,502 - -1.1 388,502 - -0.7 388,537 + -2.4 388,538 - -1.5 388,541 - -1.1 388,541 - +1.3 388,541 - -0.5 388,543 + -2.3 388,543 + -1.5 388,544 - -0.3 388,544 - +1.4 388,661 - EX31_RS19000 0.23 +0.2 388,661 - EX31_RS19000 0.23 -1.5 388,661 - EX31_RS19000 0.23 -0.3 388,684 + EX31_RS19000 0.26 +2.1 388,741 - EX31_RS19000 0.35 -1.3 388,938 + EX31_RS19000 0.67 -2.1 388,938 + EX31_RS19000 0.67 -2.2 388,938 + EX31_RS19000 0.67 -2.5 388,938 + EX31_RS19000 0.67 -0.1 388,938 + EX31_RS19000 0.67 -1.5 388,938 + EX31_RS19000 0.67 -2.7 388,939 - EX31_RS19000 0.67 -1.3 388,939 - EX31_RS19000 0.67 +2.1 388,939 - EX31_RS19000 0.67 -3.1 388,975 - EX31_RS19000 0.72 +0.3 389,041 + EX31_RS19000 0.83 -0.3 389,069 + EX31_RS19000 0.87 +0.3 389,095 + -1.5 389,096 - +1.1 389,158 + -0.1 389,158 + -0.2 389,158 + -2.3 389,159 - -1.3 389,206 - -1.9 389,214 + -1.5 389,215 - +0.6 389,215 - -0.3 389,215 - +0.7 389,235 - +1.3 389,235 - -3.3 389,246 + +1.5 389,247 - +2.9 389,247 - -0.8 389,457 - EX31_RS19005 0.12 +1.0 389,497 - EX31_RS19005 0.14 -0.3 389,497 - EX31_RS19005 0.14 -1.5 389,532 - EX31_RS19005 0.16 +1.9 389,577 - EX31_RS19005 0.18 +1.3 389,721 + EX31_RS19005 0.26 +1.0 389,722 - EX31_RS19005 0.26 +0.8 389,807 + EX31_RS19005 0.31 +0.3 389,808 - EX31_RS19005 0.31 -1.3 389,866 - EX31_RS19005 0.34 -0.7 389,866 - EX31_RS19005 0.34 +1.1 389,919 - EX31_RS19005 0.37 +0.2 389,982 - EX31_RS19005 0.40 +1.6 389,982 - EX31_RS19005 0.40 +1.0 390,036 + EX31_RS19005 0.43 -2.4 390,037 - EX31_RS19005 0.43 -2.2 390,037 - EX31_RS19005 0.43 +1.0 390,078 + EX31_RS19005 0.45 -1.3 390,078 + EX31_RS19005 0.45 +0.7 390,079 - EX31_RS19005 0.45 -1.3 390,135 + EX31_RS19005 0.48 -2.1 390,135 + EX31_RS19005 0.48 +0.4 390,136 - EX31_RS19005 0.48 +2.1 390,136 - EX31_RS19005 0.48 +1.6
Or see this region's nucleotide sequence