Strain Fitness in Rahnella sp. WP5 around EX31_RS18425

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18420 and EX31_RS18425 are separated by 306 nucleotidesEX31_RS18425 and EX31_RS18430 are separated by 44 nucleotidesEX31_RS18430 and EX31_RS18435 are separated by 206 nucleotidesEX31_RS18435 and EX31_RS18440 are separated by 2 nucleotides EX31_RS18420: EX31_RS18420 - hypothetical protein, at 256,895 to 257,722 _RS18420 EX31_RS18425: EX31_RS18425 - replication endonuclease, at 258,029 to 260,056 _RS18425 EX31_RS18430: EX31_RS18430 - hypothetical protein, at 260,101 to 260,358 _RS18430 EX31_RS18435: EX31_RS18435 - DUF5405 family protein, at 260,565 to 260,846 _RS18435 EX31_RS18440: EX31_RS18440 - TraR/DksA family transcriptional regulator, at 260,849 to 261,067 _RS18440 Position (kb) 258 259 260 261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 257.050 kb on + strand, within EX31_RS18420at 257.050 kb on + strand, within EX31_RS18420at 257.050 kb on + strand, within EX31_RS18420at 257.189 kb on + strand, within EX31_RS18420at 257.244 kb on + strand, within EX31_RS18420at 257.248 kb on + strand, within EX31_RS18420at 257.249 kb on - strand, within EX31_RS18420at 257.331 kb on + strand, within EX31_RS18420at 257.402 kb on - strand, within EX31_RS18420at 257.412 kb on + strand, within EX31_RS18420at 257.438 kb on - strand, within EX31_RS18420at 257.484 kb on + strand, within EX31_RS18420at 258.038 kb on + strandat 258.070 kb on + strandat 258.071 kb on - strandat 258.071 kb on - strandat 258.121 kb on + strandat 258.263 kb on - strand, within EX31_RS18425at 258.419 kb on + strand, within EX31_RS18425at 258.419 kb on + strand, within EX31_RS18425at 258.420 kb on - strand, within EX31_RS18425at 258.420 kb on - strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.421 kb on + strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.422 kb on - strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.423 kb on + strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.424 kb on - strand, within EX31_RS18425at 258.553 kb on + strand, within EX31_RS18425at 258.554 kb on - strand, within EX31_RS18425at 258.560 kb on - strand, within EX31_RS18425at 258.572 kb on - strand, within EX31_RS18425at 258.580 kb on + strand, within EX31_RS18425at 258.581 kb on - strand, within EX31_RS18425at 258.581 kb on - strand, within EX31_RS18425at 258.671 kb on - strand, within EX31_RS18425at 258.685 kb on - strand, within EX31_RS18425at 258.685 kb on - strand, within EX31_RS18425at 258.685 kb on - strand, within EX31_RS18425at 258.695 kb on - strand, within EX31_RS18425at 258.696 kb on + strand, within EX31_RS18425at 258.696 kb on + strand, within EX31_RS18425at 258.696 kb on + strand, within EX31_RS18425at 258.696 kb on + strand, within EX31_RS18425at 258.697 kb on - strand, within EX31_RS18425at 258.697 kb on - strand, within EX31_RS18425at 258.721 kb on + strand, within EX31_RS18425at 258.721 kb on + strand, within EX31_RS18425at 258.722 kb on - strand, within EX31_RS18425at 258.722 kb on - strand, within EX31_RS18425at 258.796 kb on + strand, within EX31_RS18425at 258.856 kb on + strand, within EX31_RS18425at 258.856 kb on + strand, within EX31_RS18425at 258.886 kb on + strand, within EX31_RS18425at 259.007 kb on - strand, within EX31_RS18425at 259.050 kb on + strand, within EX31_RS18425at 259.051 kb on - strand, within EX31_RS18425at 259.073 kb on - strand, within EX31_RS18425at 259.075 kb on + strand, within EX31_RS18425at 259.075 kb on + strand, within EX31_RS18425at 259.075 kb on + strand, within EX31_RS18425at 259.107 kb on + strand, within EX31_RS18425at 259.107 kb on + strand, within EX31_RS18425at 259.108 kb on - strand, within EX31_RS18425at 259.108 kb on - strand, within EX31_RS18425at 259.145 kb on - strand, within EX31_RS18425at 259.168 kb on + strand, within EX31_RS18425at 259.183 kb on + strand, within EX31_RS18425at 259.197 kb on - strand, within EX31_RS18425at 259.197 kb on - strand, within EX31_RS18425at 259.197 kb on - strand, within EX31_RS18425at 259.242 kb on + strand, within EX31_RS18425at 259.374 kb on - strand, within EX31_RS18425at 259.374 kb on - strand, within EX31_RS18425at 259.450 kb on + strand, within EX31_RS18425at 259.480 kb on + strand, within EX31_RS18425at 259.481 kb on - strand, within EX31_RS18425at 259.483 kb on + strand, within EX31_RS18425at 259.483 kb on + strand, within EX31_RS18425at 259.515 kb on + strand, within EX31_RS18425at 259.544 kb on + strand, within EX31_RS18425at 259.573 kb on + strand, within EX31_RS18425at 259.574 kb on - strand, within EX31_RS18425at 259.599 kb on + strand, within EX31_RS18425at 259.631 kb on - strand, within EX31_RS18425at 259.677 kb on + strand, within EX31_RS18425at 259.677 kb on + strand, within EX31_RS18425at 259.678 kb on - strand, within EX31_RS18425at 259.700 kb on + strand, within EX31_RS18425at 259.708 kb on + strand, within EX31_RS18425at 259.722 kb on - strand, within EX31_RS18425at 259.734 kb on + strand, within EX31_RS18425at 259.734 kb on + strand, within EX31_RS18425at 259.734 kb on + strand, within EX31_RS18425at 259.735 kb on - strand, within EX31_RS18425at 259.735 kb on - strand, within EX31_RS18425at 259.735 kb on - strand, within EX31_RS18425at 259.735 kb on - strand, within EX31_RS18425at 259.735 kb on - strand, within EX31_RS18425at 259.756 kb on + strand, within EX31_RS18425at 259.756 kb on + strand, within EX31_RS18425at 259.757 kb on - strand, within EX31_RS18425at 259.757 kb on - strand, within EX31_RS18425at 259.757 kb on - strand, within EX31_RS18425at 259.794 kb on + strand, within EX31_RS18425at 259.829 kb on + strand, within EX31_RS18425at 259.833 kb on + strand, within EX31_RS18425at 259.833 kb on + strand, within EX31_RS18425at 259.834 kb on - strand, within EX31_RS18425at 259.834 kb on - strand, within EX31_RS18425at 259.839 kb on + strand, within EX31_RS18425at 259.862 kb on + strandat 259.863 kb on - strandat 259.863 kb on - strandat 259.892 kb on + strandat 259.927 kb on + strandat 260.049 kb on + strandat 260.049 kb on + strandat 260.059 kb on + strandat 260.063 kb on - strandat 260.153 kb on + strand, within EX31_RS18430at 260.172 kb on - strand, within EX31_RS18430at 260.174 kb on + strand, within EX31_RS18430at 260.174 kb on + strand, within EX31_RS18430at 260.174 kb on + strand, within EX31_RS18430at 260.174 kb on + strand, within EX31_RS18430at 260.174 kb on + strand, within EX31_RS18430at 260.175 kb on - strand, within EX31_RS18430at 260.175 kb on - strand, within EX31_RS18430at 260.202 kb on + strand, within EX31_RS18430at 260.202 kb on + strand, within EX31_RS18430at 260.202 kb on + strand, within EX31_RS18430at 260.202 kb on + strand, within EX31_RS18430at 260.202 kb on + strand, within EX31_RS18430at 260.202 kb on + strand, within EX31_RS18430at 260.260 kb on + strand, within EX31_RS18430at 260.260 kb on + strand, within EX31_RS18430at 260.307 kb on + strand, within EX31_RS18430at 260.307 kb on + strand, within EX31_RS18430at 260.308 kb on - strand, within EX31_RS18430at 260.311 kb on + strand, within EX31_RS18430at 260.311 kb on + strand, within EX31_RS18430at 260.311 kb on + strand, within EX31_RS18430at 260.312 kb on - strand, within EX31_RS18430at 260.319 kb on + strand, within EX31_RS18430at 260.367 kb on + strandat 260.385 kb on - strandat 260.407 kb on + strandat 260.407 kb on + strandat 260.489 kb on + strandat 260.490 kb on - strandat 260.490 kb on - strandat 260.574 kb on - strandat 260.582 kb on + strandat 260.583 kb on - strandat 260.653 kb on - strand, within EX31_RS18435at 260.698 kb on - strand, within EX31_RS18435at 260.698 kb on - strand, within EX31_RS18435at 260.719 kb on + strand, within EX31_RS18435at 260.719 kb on + strand, within EX31_RS18435at 260.719 kb on + strand, within EX31_RS18435at 260.719 kb on + strand, within EX31_RS18435at 260.720 kb on - strand, within EX31_RS18435at 260.720 kb on - strand, within EX31_RS18435at 260.720 kb on - strand, within EX31_RS18435at 260.720 kb on - strand, within EX31_RS18435at 260.733 kb on + strand, within EX31_RS18435at 260.734 kb on - strand, within EX31_RS18435at 260.734 kb on - strand, within EX31_RS18435at 260.738 kb on - strand, within EX31_RS18435at 260.812 kb on - strand, within EX31_RS18435at 260.850 kb on + strandat 260.850 kb on + strandat 260.989 kb on + strand, within EX31_RS18440at 260.990 kb on - strand, within EX31_RS18440at 260.990 kb on - strand, within EX31_RS18440at 260.995 kb on + strand, within EX31_RS18440at 260.995 kb on + strand, within EX31_RS18440at 260.996 kb on - strand, within EX31_RS18440at 261.008 kb on + strand, within EX31_RS18440at 261.008 kb on + strand, within EX31_RS18440

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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257,050 + EX31_RS18420 0.19 -0.8
257,050 + EX31_RS18420 0.19 +1.8
257,050 + EX31_RS18420 0.19 +1.2
257,189 + EX31_RS18420 0.36 +1.7
257,244 + EX31_RS18420 0.42 +0.2
257,248 + EX31_RS18420 0.43 +1.2
257,249 - EX31_RS18420 0.43 +1.2
257,331 + EX31_RS18420 0.53 +0.2
257,402 - EX31_RS18420 0.61 -1.8
257,412 + EX31_RS18420 0.62 -1.1
257,438 - EX31_RS18420 0.66 -2.8
257,484 + EX31_RS18420 0.71 +0.5
258,038 + -0.2
258,070 + -2.0
258,071 - -1.8
258,071 - +2.0
258,121 + +3.5
258,263 - EX31_RS18425 0.12 +2.8
258,419 + EX31_RS18425 0.19 -1.8
258,419 + EX31_RS18425 0.19 +0.1
258,420 - EX31_RS18425 0.19 +3.0
258,420 - EX31_RS18425 0.19 -2.0
258,421 + EX31_RS18425 0.19 -1.8
258,421 + EX31_RS18425 0.19 -2.0
258,421 + EX31_RS18425 0.19 +1.7
258,421 + EX31_RS18425 0.19 -0.3
258,421 + EX31_RS18425 0.19 -0.4
258,421 + EX31_RS18425 0.19 -2.6
258,422 - EX31_RS18425 0.19 -1.8
258,422 - EX31_RS18425 0.19 -2.7
258,422 - EX31_RS18425 0.19 +1.0
258,422 - EX31_RS18425 0.19 +3.7
258,422 - EX31_RS18425 0.19 -0.8
258,422 - EX31_RS18425 0.19 -1.6
258,422 - EX31_RS18425 0.19 -1.8
258,422 - EX31_RS18425 0.19 -1.1
258,422 - EX31_RS18425 0.19 -1.1
258,422 - EX31_RS18425 0.19 -0.4
258,422 - EX31_RS18425 0.19 -2.1
258,422 - EX31_RS18425 0.19 -1.8
258,422 - EX31_RS18425 0.19 +4.2
258,422 - EX31_RS18425 0.19 +1.0
258,423 + EX31_RS18425 0.19 +2.0
258,423 + EX31_RS18425 0.19 +0.4
258,423 + EX31_RS18425 0.19 +1.9
258,423 + EX31_RS18425 0.19 +1.2
258,423 + EX31_RS18425 0.19 +0.2
258,423 + EX31_RS18425 0.19 +2.8
258,424 - EX31_RS18425 0.19 +1.6
258,424 - EX31_RS18425 0.19 +1.2
258,424 - EX31_RS18425 0.19 -2.8
258,424 - EX31_RS18425 0.19 -1.1
258,424 - EX31_RS18425 0.19 -2.5
258,424 - EX31_RS18425 0.19 -2.5
258,424 - EX31_RS18425 0.19 -0.8
258,553 + EX31_RS18425 0.26 -0.4
258,554 - EX31_RS18425 0.26 -1.4
258,560 - EX31_RS18425 0.26 -3.0
258,572 - EX31_RS18425 0.27 -0.4
258,580 + EX31_RS18425 0.27 -1.4
258,581 - EX31_RS18425 0.27 -1.8
258,581 - EX31_RS18425 0.27 +0.6
258,671 - EX31_RS18425 0.32 +1.7
258,685 - EX31_RS18425 0.32 -2.1
258,685 - EX31_RS18425 0.32 -0.8
258,685 - EX31_RS18425 0.32 -1.8
258,695 - EX31_RS18425 0.33 +0.2
258,696 + EX31_RS18425 0.33 -1.1
258,696 + EX31_RS18425 0.33 -1.7
258,696 + EX31_RS18425 0.33 +0.5
258,696 + EX31_RS18425 0.33 +3.3
258,697 - EX31_RS18425 0.33 +1.6
258,697 - EX31_RS18425 0.33 +1.5
258,721 + EX31_RS18425 0.34 -1.8
258,721 + EX31_RS18425 0.34 +2.7
258,722 - EX31_RS18425 0.34 +1.2
258,722 - EX31_RS18425 0.34 -1.6
258,796 + EX31_RS18425 0.38 -3.0
258,856 + EX31_RS18425 0.41 -2.1
258,856 + EX31_RS18425 0.41 -1.1
258,886 + EX31_RS18425 0.42 +0.5
259,007 - EX31_RS18425 0.48 +0.3
259,050 + EX31_RS18425 0.50 +2.4
259,051 - EX31_RS18425 0.50 -0.4
259,073 - EX31_RS18425 0.51 -0.5
259,075 + EX31_RS18425 0.52 +1.6
259,075 + EX31_RS18425 0.52 +1.8
259,075 + EX31_RS18425 0.52 -2.1
259,107 + EX31_RS18425 0.53 -0.8
259,107 + EX31_RS18425 0.53 -1.4
259,108 - EX31_RS18425 0.53 -1.1
259,108 - EX31_RS18425 0.53 +2.3
259,145 - EX31_RS18425 0.55 +1.5
259,168 + EX31_RS18425 0.56 +3.0
259,183 + EX31_RS18425 0.57 +3.2
259,197 - EX31_RS18425 0.58 -1.1
259,197 - EX31_RS18425 0.58 +0.2
259,197 - EX31_RS18425 0.58 -0.6
259,242 + EX31_RS18425 0.60 -1.6
259,374 - EX31_RS18425 0.66 +2.3
259,374 - EX31_RS18425 0.66 -0.2
259,450 + EX31_RS18425 0.70 -2.0
259,480 + EX31_RS18425 0.72 -1.1
259,481 - EX31_RS18425 0.72 -0.1
259,483 + EX31_RS18425 0.72 -0.8
259,483 + EX31_RS18425 0.72 -2.7
259,515 + EX31_RS18425 0.73 -2.8
259,544 + EX31_RS18425 0.75 +0.9
259,573 + EX31_RS18425 0.76 -1.1
259,574 - EX31_RS18425 0.76 +0.2
259,599 + EX31_RS18425 0.77 -1.6
259,631 - EX31_RS18425 0.79 +0.6
259,677 + EX31_RS18425 0.81 +2.2
259,677 + EX31_RS18425 0.81 +2.7
259,678 - EX31_RS18425 0.81 -0.8
259,700 + EX31_RS18425 0.82 -2.0
259,708 + EX31_RS18425 0.83 -0.2
259,722 - EX31_RS18425 0.83 +0.9
259,734 + EX31_RS18425 0.84 -1.8
259,734 + EX31_RS18425 0.84 +1.2
259,734 + EX31_RS18425 0.84 +0.6
259,735 - EX31_RS18425 0.84 -2.4
259,735 - EX31_RS18425 0.84 +0.4
259,735 - EX31_RS18425 0.84 +0.5
259,735 - EX31_RS18425 0.84 +2.1
259,735 - EX31_RS18425 0.84 +1.9
259,756 + EX31_RS18425 0.85 -2.7
259,756 + EX31_RS18425 0.85 +0.8
259,757 - EX31_RS18425 0.85 -1.4
259,757 - EX31_RS18425 0.85 -0.8
259,757 - EX31_RS18425 0.85 -2.1
259,794 + EX31_RS18425 0.87 -1.1
259,829 + EX31_RS18425 0.89 +0.8
259,833 + EX31_RS18425 0.89 +1.4
259,833 + EX31_RS18425 0.89 +0.5
259,834 - EX31_RS18425 0.89 +0.2
259,834 - EX31_RS18425 0.89 -0.8
259,839 + EX31_RS18425 0.89 -1.1
259,862 + -0.6
259,863 - +2.0
259,863 - -1.8
259,892 + +0.5
259,927 + -2.3
260,049 + +0.7
260,049 + -0.4
260,059 + -1.1
260,063 - +1.0
260,153 + EX31_RS18430 0.20 -1.8
260,172 - EX31_RS18430 0.28 +2.2
260,174 + EX31_RS18430 0.28 +0.4
260,174 + EX31_RS18430 0.28 -1.4
260,174 + EX31_RS18430 0.28 +0.2
260,174 + EX31_RS18430 0.28 +1.2
260,174 + EX31_RS18430 0.28 -2.0
260,175 - EX31_RS18430 0.29 -1.6
260,175 - EX31_RS18430 0.29 +0.2
260,202 + EX31_RS18430 0.39 +2.4
260,202 + EX31_RS18430 0.39 +2.5
260,202 + EX31_RS18430 0.39 +1.5
260,202 + EX31_RS18430 0.39 -2.0
260,202 + EX31_RS18430 0.39 +1.4
260,202 + EX31_RS18430 0.39 +2.4
260,260 + EX31_RS18430 0.62 -2.6
260,260 + EX31_RS18430 0.62 -0.8
260,307 + EX31_RS18430 0.80 -0.5
260,307 + EX31_RS18430 0.80 -1.8
260,308 - EX31_RS18430 0.80 -1.1
260,311 + EX31_RS18430 0.81 +1.8
260,311 + EX31_RS18430 0.81 -2.4
260,311 + EX31_RS18430 0.81 -3.8
260,312 - EX31_RS18430 0.82 -1.4
260,319 + EX31_RS18430 0.84 +1.4
260,367 + -1.8
260,385 - +1.6
260,407 + -1.4
260,407 + +0.9
260,489 + -3.0
260,490 - -1.6
260,490 - -1.1
260,574 - +0.3
260,582 + -2.6
260,583 - +1.7
260,653 - EX31_RS18435 0.31 -2.0
260,698 - EX31_RS18435 0.47 +0.3
260,698 - EX31_RS18435 0.47 -0.3
260,719 + EX31_RS18435 0.55 -1.1
260,719 + EX31_RS18435 0.55 +2.2
260,719 + EX31_RS18435 0.55 +1.0
260,719 + EX31_RS18435 0.55 +1.6
260,720 - EX31_RS18435 0.55 +2.1
260,720 - EX31_RS18435 0.55 +0.2
260,720 - EX31_RS18435 0.55 +2.5
260,720 - EX31_RS18435 0.55 +0.5
260,733 + EX31_RS18435 0.60 +0.3
260,734 - EX31_RS18435 0.60 -2.1
260,734 - EX31_RS18435 0.60 -2.0
260,738 - EX31_RS18435 0.61 -2.0
260,812 - EX31_RS18435 0.88 -2.1
260,850 + -1.4
260,850 + +2.2
260,989 + EX31_RS18440 0.64 +1.2
260,990 - EX31_RS18440 0.64 -2.0
260,990 - EX31_RS18440 0.64 +0.7
260,995 + EX31_RS18440 0.67 +0.4
260,995 + EX31_RS18440 0.67 -2.2
260,996 - EX31_RS18440 0.67 -1.8
261,008 + EX31_RS18440 0.73 -1.1
261,008 + EX31_RS18440 0.73 -1.6

Or see this region's nucleotide sequence