Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17470 and EX31_RS17475 are separated by 349 nucleotides EX31_RS17475 and EX31_RS17480 are separated by 39 nucleotides
EX31_RS17470: EX31_RS17470 - nitrogen assimilation transcriptional regulator, at 46,017 to 46,943
_RS17470
EX31_RS17475: EX31_RS17475 - SDR family oxidoreductase, at 47,293 to 48,078
_RS17475
EX31_RS17480: EX31_RS17480 - GntR family transcriptional regulator, at 48,118 to 49,017
_RS17480
Position (kb) 47
48
49 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 46.305 kb on + strand, within EX31_RS17470 at 46.306 kb on - strand, within EX31_RS17470 at 46.405 kb on + strand, within EX31_RS17470 at 46.406 kb on - strand, within EX31_RS17470 at 46.406 kb on - strand, within EX31_RS17470 at 46.406 kb on - strand, within EX31_RS17470 at 46.406 kb on - strand, within EX31_RS17470 at 46.406 kb on - strand, within EX31_RS17470 at 46.445 kb on - strand, within EX31_RS17470 at 46.445 kb on - strand, within EX31_RS17470 at 46.536 kb on + strand, within EX31_RS17470 at 46.537 kb on - strand, within EX31_RS17470 at 46.573 kb on + strand, within EX31_RS17470 at 46.758 kb on - strand, within EX31_RS17470 at 46.760 kb on + strand, within EX31_RS17470 at 46.760 kb on + strand, within EX31_RS17470 at 46.921 kb on + strand at 46.921 kb on + strand at 46.921 kb on + strand at 46.922 kb on - strand at 46.990 kb on - strand at 46.990 kb on - strand at 46.997 kb on + strand at 46.998 kb on - strand at 46.998 kb on - strand at 47.003 kb on - strand at 47.003 kb on - strand at 47.030 kb on + strand at 47.089 kb on + strand at 47.115 kb on + strand at 47.119 kb on - strand at 47.179 kb on + strand at 47.210 kb on + strand at 47.212 kb on + strand at 47.212 kb on + strand at 47.212 kb on + strand at 47.212 kb on + strand at 47.212 kb on + strand at 47.213 kb on - strand at 47.213 kb on - strand at 47.213 kb on - strand at 47.240 kb on - strand at 47.242 kb on + strand at 47.294 kb on + strand at 47.295 kb on - strand at 47.296 kb on + strand at 47.345 kb on + strand at 47.345 kb on + strand at 47.346 kb on - strand at 47.346 kb on - strand at 47.346 kb on - strand at 47.346 kb on - strand at 47.346 kb on - strand at 47.444 kb on - strand, within EX31_RS17475 at 47.607 kb on + strand, within EX31_RS17475 at 47.608 kb on - strand, within EX31_RS17475 at 47.661 kb on + strand, within EX31_RS17475 at 47.661 kb on + strand, within EX31_RS17475 at 47.662 kb on - strand, within EX31_RS17475 at 47.665 kb on - strand, within EX31_RS17475 at 47.665 kb on - strand, within EX31_RS17475 at 48.096 kb on + strand at 48.097 kb on - strand at 48.097 kb on - strand at 48.100 kb on + strand at 48.101 kb on - strand at 48.101 kb on - strand at 48.101 kb on - strand at 48.142 kb on - strand at 48.155 kb on + strand at 48.276 kb on - strand, within EX31_RS17480 at 48.276 kb on - strand, within EX31_RS17480 at 48.276 kb on - strand, within EX31_RS17480 at 48.276 kb on - strand, within EX31_RS17480 at 48.340 kb on - strand, within EX31_RS17480 at 48.340 kb on - strand, within EX31_RS17480 at 48.430 kb on - strand, within EX31_RS17480 at 48.437 kb on + strand, within EX31_RS17480 at 48.441 kb on + strand, within EX31_RS17480 at 48.441 kb on + strand, within EX31_RS17480 at 48.442 kb on - strand, within EX31_RS17480 at 48.442 kb on - strand, within EX31_RS17480 at 48.442 kb on - strand, within EX31_RS17480 at 48.442 kb on - strand, within EX31_RS17480 at 48.442 kb on - strand, within EX31_RS17480 at 48.442 kb on - strand, within EX31_RS17480 at 48.541 kb on - strand, within EX31_RS17480 at 48.551 kb on - strand, within EX31_RS17480 at 48.551 kb on - strand, within EX31_RS17480 at 48.572 kb on - strand, within EX31_RS17480 at 48.665 kb on + strand, within EX31_RS17480 at 48.741 kb on - strand, within EX31_RS17480 at 48.743 kb on - strand, within EX31_RS17480 at 48.743 kb on - strand, within EX31_RS17480 at 48.769 kb on - strand, within EX31_RS17480 at 48.769 kb on - strand, within EX31_RS17480 at 48.848 kb on - strand, within EX31_RS17480 at 48.848 kb on - strand, within EX31_RS17480 at 48.860 kb on - strand, within EX31_RS17480 at 48.873 kb on + strand, within EX31_RS17480 at 48.873 kb on + strand, within EX31_RS17480 at 48.904 kb on - strand, within EX31_RS17480 at 49.006 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 46,305 + EX31_RS17470 0.31 +0.1 46,306 - EX31_RS17470 0.31 -0.4 46,405 + EX31_RS17470 0.42 -0.5 46,406 - EX31_RS17470 0.42 +1.4 46,406 - EX31_RS17470 0.42 -1.7 46,406 - EX31_RS17470 0.42 +2.6 46,406 - EX31_RS17470 0.42 -0.2 46,406 - EX31_RS17470 0.42 -2.0 46,445 - EX31_RS17470 0.46 -2.3 46,445 - EX31_RS17470 0.46 -2.3 46,536 + EX31_RS17470 0.56 +0.1 46,537 - EX31_RS17470 0.56 +1.4 46,573 + EX31_RS17470 0.60 +1.7 46,758 - EX31_RS17470 0.80 -2.4 46,760 + EX31_RS17470 0.80 +1.1 46,760 + EX31_RS17470 0.80 +0.3 46,921 + +1.1 46,921 + -0.9 46,921 + +0.1 46,922 - -1.2 46,990 - -1.7 46,990 - -0.9 46,997 + -1.7 46,998 - -1.4 46,998 - +2.1 47,003 - -1.4 47,003 - +2.4 47,030 + +1.9 47,089 + -1.2 47,115 + -1.2 47,119 - +4.0 47,179 + -0.4 47,210 + -1.7 47,212 + +0.1 47,212 + +1.5 47,212 + -1.9 47,212 + +1.1 47,212 + +1.1 47,213 - +0.8 47,213 - +3.0 47,213 - -1.2 47,240 - +1.1 47,242 + +1.1 47,294 + +0.1 47,295 - +0.5 47,296 + +0.8 47,345 + +2.1 47,345 + -3.2 47,346 - +1.7 47,346 - +0.6 47,346 - -0.9 47,346 - +1.6 47,346 - -2.3 47,444 - EX31_RS17475 0.19 +1.1 47,607 + EX31_RS17475 0.40 +3.1 47,608 - EX31_RS17475 0.40 +2.5 47,661 + EX31_RS17475 0.47 -2.2 47,661 + EX31_RS17475 0.47 +2.3 47,662 - EX31_RS17475 0.47 +1.1 47,665 - EX31_RS17475 0.47 +1.5 47,665 - EX31_RS17475 0.47 +0.3 48,096 + -0.4 48,097 - +1.7 48,097 - +0.6 48,100 + +1.1 48,101 - -0.1 48,101 - +1.3 48,101 - +1.1 48,142 - -2.2 48,155 + +0.9 48,276 - EX31_RS17480 0.18 -0.9 48,276 - EX31_RS17480 0.18 -2.0 48,276 - EX31_RS17480 0.18 +1.9 48,276 - EX31_RS17480 0.18 +1.1 48,340 - EX31_RS17480 0.25 +1.0 48,340 - EX31_RS17480 0.25 +2.7 48,430 - EX31_RS17480 0.35 -1.9 48,437 + EX31_RS17480 0.35 -1.2 48,441 + EX31_RS17480 0.36 -1.9 48,441 + EX31_RS17480 0.36 +1.1 48,442 - EX31_RS17480 0.36 -3.8 48,442 - EX31_RS17480 0.36 -1.4 48,442 - EX31_RS17480 0.36 +0.1 48,442 - EX31_RS17480 0.36 +2.7 48,442 - EX31_RS17480 0.36 +1.1 48,442 - EX31_RS17480 0.36 +1.1 48,541 - EX31_RS17480 0.47 +1.3 48,551 - EX31_RS17480 0.48 +2.5 48,551 - EX31_RS17480 0.48 -0.1 48,572 - EX31_RS17480 0.50 -2.8 48,665 + EX31_RS17480 0.61 -1.2 48,741 - EX31_RS17480 0.69 -1.1 48,743 - EX31_RS17480 0.69 +1.3 48,743 - EX31_RS17480 0.69 -0.7 48,769 - EX31_RS17480 0.72 +1.0 48,769 - EX31_RS17480 0.72 -0.6 48,848 - EX31_RS17480 0.81 +0.4 48,848 - EX31_RS17480 0.81 +2.2 48,860 - EX31_RS17480 0.82 +1.6 48,873 + EX31_RS17480 0.84 -2.0 48,873 + EX31_RS17480 0.84 +2.6 48,904 - EX31_RS17480 0.87 +1.6 49,006 - -3.6
Or see this region's nucleotide sequence