Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14035 and EX31_RS14040 are separated by 152 nucleotides EX31_RS14040 and EX31_RS14045 are separated by 778 nucleotides
EX31_RS14035: EX31_RS14035 - vitamin B12 ABC transporter permease BtuC, at 71,150 to 72,157
_RS14035
EX31_RS14040: EX31_RS14040 - DUF2502 domain-containing protein, at 72,310 to 72,708
_RS14040
EX31_RS14045: EX31_RS14045 - integration host factor subunit alpha, at 73,487 to 73,783
_RS14045
Position (kb) 72
73 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 71.438 kb on - strand, within EX31_RS14035 at 71.439 kb on + strand, within EX31_RS14035 at 71.459 kb on + strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.499 kb on - strand, within EX31_RS14035 at 71.535 kb on - strand, within EX31_RS14035 at 71.607 kb on + strand, within EX31_RS14035 at 71.607 kb on + strand, within EX31_RS14035 at 71.608 kb on - strand, within EX31_RS14035 at 71.644 kb on - strand, within EX31_RS14035 at 71.660 kb on + strand, within EX31_RS14035 at 71.661 kb on - strand, within EX31_RS14035 at 71.661 kb on - strand, within EX31_RS14035 at 71.683 kb on + strand, within EX31_RS14035 at 71.684 kb on - strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.737 kb on + strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.738 kb on - strand, within EX31_RS14035 at 71.739 kb on + strand, within EX31_RS14035 at 71.739 kb on + strand, within EX31_RS14035 at 71.739 kb on + strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.740 kb on - strand, within EX31_RS14035 at 71.741 kb on + strand, within EX31_RS14035 at 71.741 kb on + strand, within EX31_RS14035 at 71.741 kb on + strand, within EX31_RS14035 at 71.741 kb on + strand, within EX31_RS14035 at 71.742 kb on - strand, within EX31_RS14035 at 71.820 kb on - strand, within EX31_RS14035 at 71.820 kb on - strand, within EX31_RS14035 at 71.831 kb on + strand, within EX31_RS14035 at 71.832 kb on - strand, within EX31_RS14035 at 71.832 kb on - strand, within EX31_RS14035 at 71.871 kb on - strand, within EX31_RS14035 at 72.080 kb on - strand at 72.091 kb on - strand at 72.192 kb on + strand at 72.193 kb on - strand at 72.193 kb on - strand at 72.203 kb on + strand at 72.215 kb on - strand at 72.215 kb on - strand at 72.247 kb on + strand at 72.299 kb on + strand at 72.370 kb on - strand, within EX31_RS14040 at 72.451 kb on - strand, within EX31_RS14040 at 72.508 kb on - strand, within EX31_RS14040 at 72.625 kb on + strand, within EX31_RS14040 at 72.626 kb on - strand, within EX31_RS14040 at 72.640 kb on - strand, within EX31_RS14040 at 72.691 kb on + strand at 72.692 kb on - strand at 72.711 kb on + strand at 72.716 kb on - strand at 72.847 kb on - strand at 72.974 kb on + strand at 73.120 kb on + strand at 73.120 kb on + strand at 73.210 kb on + strand at 73.361 kb on - strand at 73.387 kb on - strand at 73.411 kb on - strand at 73.489 kb on - strand at 73.489 kb on - strand at 73.489 kb on - strand at 73.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 71,438 - EX31_RS14035 0.29 -0.4 71,439 + EX31_RS14035 0.29 +1.5 71,459 + EX31_RS14035 0.31 +3.1 71,499 - EX31_RS14035 0.35 -2.2 71,499 - EX31_RS14035 0.35 -1.9 71,499 - EX31_RS14035 0.35 -1.3 71,499 - EX31_RS14035 0.35 +2.3 71,499 - EX31_RS14035 0.35 -1.3 71,535 - EX31_RS14035 0.38 -0.3 71,607 + EX31_RS14035 0.45 +2.3 71,607 + EX31_RS14035 0.45 +2.1 71,608 - EX31_RS14035 0.45 -1.0 71,644 - EX31_RS14035 0.49 -1.5 71,660 + EX31_RS14035 0.51 +1.7 71,661 - EX31_RS14035 0.51 +2.1 71,661 - EX31_RS14035 0.51 -0.7 71,683 + EX31_RS14035 0.53 -2.4 71,684 - EX31_RS14035 0.53 -0.0 71,737 + EX31_RS14035 0.58 -1.0 71,737 + EX31_RS14035 0.58 +1.0 71,737 + EX31_RS14035 0.58 +1.3 71,737 + EX31_RS14035 0.58 -2.2 71,737 + EX31_RS14035 0.58 -1.3 71,738 - EX31_RS14035 0.58 -0.7 71,738 - EX31_RS14035 0.58 +0.3 71,738 - EX31_RS14035 0.58 +0.8 71,738 - EX31_RS14035 0.58 +2.7 71,738 - EX31_RS14035 0.58 +0.9 71,738 - EX31_RS14035 0.58 +1.0 71,738 - EX31_RS14035 0.58 +0.9 71,739 + EX31_RS14035 0.58 -1.0 71,739 + EX31_RS14035 0.58 +1.5 71,739 + EX31_RS14035 0.58 -2.5 71,740 - EX31_RS14035 0.59 -0.2 71,740 - EX31_RS14035 0.59 +0.3 71,740 - EX31_RS14035 0.59 +1.3 71,740 - EX31_RS14035 0.59 -0.3 71,740 - EX31_RS14035 0.59 -1.9 71,740 - EX31_RS14035 0.59 +1.5 71,740 - EX31_RS14035 0.59 -0.3 71,740 - EX31_RS14035 0.59 +3.7 71,741 + EX31_RS14035 0.59 -1.0 71,741 + EX31_RS14035 0.59 -2.6 71,741 + EX31_RS14035 0.59 -0.7 71,741 + EX31_RS14035 0.59 -0.8 71,742 - EX31_RS14035 0.59 -0.2 71,820 - EX31_RS14035 0.66 +3.6 71,820 - EX31_RS14035 0.66 +1.5 71,831 + EX31_RS14035 0.68 -2.6 71,832 - EX31_RS14035 0.68 +0.9 71,832 - EX31_RS14035 0.68 -0.3 71,871 - EX31_RS14035 0.72 +1.0 72,080 - -0.3 72,091 - +0.2 72,192 + -2.2 72,193 - -0.3 72,193 - -1.7 72,203 + -0.2 72,215 - -1.3 72,215 - -0.7 72,247 + +0.3 72,299 + -2.4 72,370 - EX31_RS14040 0.15 -1.7 72,451 - EX31_RS14040 0.35 -2.4 72,508 - EX31_RS14040 0.50 -0.7 72,625 + EX31_RS14040 0.79 -0.3 72,626 - EX31_RS14040 0.79 -1.0 72,640 - EX31_RS14040 0.83 +0.4 72,691 + +1.9 72,692 - +3.0 72,711 + -1.3 72,716 - +3.7 72,847 - +1.5 72,974 + -2.7 73,120 + +1.3 73,120 + -0.7 73,210 + +0.3 73,361 - +1.7 73,387 - +0.3 73,411 - -0.3 73,489 - +2.0 73,489 - -1.0 73,489 - +2.0 73,512 - -0.7
Or see this region's nucleotide sequence