Strain Fitness in Rahnella sp. WP5 around EX31_RS14030

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14025 and EX31_RS14030 are separated by 19 nucleotidesEX31_RS14030 and EX31_RS14035 are separated by 73 nucleotides EX31_RS14025: EX31_RS14025 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 69,756 to 70,505 _RS14025 EX31_RS14030: EX31_RS14030 - glutathione peroxidase, at 70,525 to 71,076 _RS14030 EX31_RS14035: EX31_RS14035 - vitamin B12 ABC transporter permease BtuC, at 71,150 to 72,157 _RS14035 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 69.527 kb on + strandat 69.725 kb on - strandat 69.728 kb on - strandat 69.728 kb on - strandat 69.730 kb on + strandat 69.730 kb on + strandat 69.731 kb on - strandat 69.737 kb on - strandat 69.815 kb on - strandat 69.829 kb on - strandat 69.887 kb on + strand, within EX31_RS14025at 69.887 kb on + strand, within EX31_RS14025at 69.888 kb on - strand, within EX31_RS14025at 69.888 kb on - strand, within EX31_RS14025at 70.049 kb on + strand, within EX31_RS14025at 70.080 kb on + strand, within EX31_RS14025at 70.161 kb on + strand, within EX31_RS14025at 70.161 kb on + strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.281 kb on + strand, within EX31_RS14025at 70.371 kb on - strand, within EX31_RS14025at 70.424 kb on + strand, within EX31_RS14025at 70.662 kb on + strand, within EX31_RS14030at 70.929 kb on - strand, within EX31_RS14030at 70.932 kb on + strand, within EX31_RS14030at 70.933 kb on - strand, within EX31_RS14030at 70.949 kb on + strand, within EX31_RS14030at 70.950 kb on - strand, within EX31_RS14030at 70.950 kb on - strand, within EX31_RS14030at 70.950 kb on - strand, within EX31_RS14030at 70.996 kb on + strand, within EX31_RS14030at 71.007 kb on + strand, within EX31_RS14030at 71.007 kb on + strand, within EX31_RS14030at 71.007 kb on + strand, within EX31_RS14030at 71.008 kb on - strand, within EX31_RS14030at 71.008 kb on - strand, within EX31_RS14030at 71.010 kb on - strand, within EX31_RS14030at 71.041 kb on - strandat 71.055 kb on + strandat 71.055 kb on + strandat 71.055 kb on + strandat 71.061 kb on - strandat 71.071 kb on - strandat 71.097 kb on + strandat 71.103 kb on - strandat 71.229 kb on - strandat 71.261 kb on + strand, within EX31_RS14035at 71.262 kb on - strand, within EX31_RS14035at 71.276 kb on + strand, within EX31_RS14035at 71.277 kb on - strand, within EX31_RS14035at 71.438 kb on - strand, within EX31_RS14035at 71.439 kb on + strand, within EX31_RS14035at 71.459 kb on + strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.535 kb on - strand, within EX31_RS14035at 71.607 kb on + strand, within EX31_RS14035at 71.607 kb on + strand, within EX31_RS14035at 71.608 kb on - strand, within EX31_RS14035at 71.644 kb on - strand, within EX31_RS14035at 71.660 kb on + strand, within EX31_RS14035at 71.661 kb on - strand, within EX31_RS14035at 71.661 kb on - strand, within EX31_RS14035at 71.683 kb on + strand, within EX31_RS14035at 71.684 kb on - strand, within EX31_RS14035at 71.737 kb on + strand, within EX31_RS14035at 71.737 kb on + strand, within EX31_RS14035at 71.737 kb on + strand, within EX31_RS14035at 71.737 kb on + strand, within EX31_RS14035at 71.737 kb on + strand, within EX31_RS14035at 71.738 kb on - strand, within EX31_RS14035at 71.738 kb on - strand, within EX31_RS14035at 71.738 kb on - strand, within EX31_RS14035at 71.738 kb on - strand, within EX31_RS14035at 71.738 kb on - strand, within EX31_RS14035at 71.738 kb on - strand, within EX31_RS14035at 71.738 kb on - strand, within EX31_RS14035at 71.739 kb on + strand, within EX31_RS14035at 71.739 kb on + strand, within EX31_RS14035at 71.739 kb on + strand, within EX31_RS14035at 71.740 kb on - strand, within EX31_RS14035at 71.740 kb on - strand, within EX31_RS14035at 71.740 kb on - strand, within EX31_RS14035at 71.740 kb on - strand, within EX31_RS14035at 71.740 kb on - strand, within EX31_RS14035at 71.740 kb on - strand, within EX31_RS14035at 71.740 kb on - strand, within EX31_RS14035at 71.740 kb on - strand, within EX31_RS14035at 71.741 kb on + strand, within EX31_RS14035at 71.741 kb on + strand, within EX31_RS14035at 71.741 kb on + strand, within EX31_RS14035at 71.741 kb on + strand, within EX31_RS14035at 71.742 kb on - strand, within EX31_RS14035at 71.820 kb on - strand, within EX31_RS14035at 71.820 kb on - strand, within EX31_RS14035at 71.831 kb on + strand, within EX31_RS14035at 71.832 kb on - strand, within EX31_RS14035at 71.832 kb on - strand, within EX31_RS14035at 71.871 kb on - strand, within EX31_RS14035

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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69,527 + -1.5
69,725 - +1.7
69,728 - -1.3
69,728 - -2.3
69,730 + +0.4
69,730 + +1.1
69,731 - +0.4
69,737 - -0.7
69,815 - -1.3
69,829 - -1.0
69,887 + EX31_RS14025 0.17 -1.9
69,887 + EX31_RS14025 0.17 +1.3
69,888 - EX31_RS14025 0.18 +1.9
69,888 - EX31_RS14025 0.18 +2.6
70,049 + EX31_RS14025 0.39 +0.3
70,080 + EX31_RS14025 0.43 -2.3
70,161 + EX31_RS14025 0.54 -0.0
70,161 + EX31_RS14025 0.54 -0.3
70,162 - EX31_RS14025 0.54 -1.9
70,162 - EX31_RS14025 0.54 +1.9
70,162 - EX31_RS14025 0.54 +1.3
70,162 - EX31_RS14025 0.54 +0.6
70,281 + EX31_RS14025 0.70 -2.7
70,371 - EX31_RS14025 0.82 +2.3
70,424 + EX31_RS14025 0.89 +0.3
70,662 + EX31_RS14030 0.25 -0.7
70,929 - EX31_RS14030 0.73 +1.9
70,932 + EX31_RS14030 0.74 -0.3
70,933 - EX31_RS14030 0.74 +0.3
70,949 + EX31_RS14030 0.77 -1.0
70,950 - EX31_RS14030 0.77 -1.3
70,950 - EX31_RS14030 0.77 -0.7
70,950 - EX31_RS14030 0.77 -1.5
70,996 + EX31_RS14030 0.85 +0.3
71,007 + EX31_RS14030 0.87 +0.3
71,007 + EX31_RS14030 0.87 +1.3
71,007 + EX31_RS14030 0.87 -1.3
71,008 - EX31_RS14030 0.88 -0.3
71,008 - EX31_RS14030 0.88 -1.3
71,010 - EX31_RS14030 0.88 -0.7
71,041 - +4.0
71,055 + +2.3
71,055 + -0.4
71,055 + +1.9
71,061 - +0.7
71,071 - +3.3
71,097 + -2.2
71,103 - +1.3
71,229 - +3.4
71,261 + EX31_RS14035 0.11 +0.5
71,262 - EX31_RS14035 0.11 -1.0
71,276 + EX31_RS14035 0.12 +1.3
71,277 - EX31_RS14035 0.13 +1.6
71,438 - EX31_RS14035 0.29 -0.4
71,439 + EX31_RS14035 0.29 +1.5
71,459 + EX31_RS14035 0.31 +3.1
71,499 - EX31_RS14035 0.35 -2.2
71,499 - EX31_RS14035 0.35 -1.9
71,499 - EX31_RS14035 0.35 -1.3
71,499 - EX31_RS14035 0.35 +2.3
71,499 - EX31_RS14035 0.35 -1.3
71,535 - EX31_RS14035 0.38 -0.3
71,607 + EX31_RS14035 0.45 +2.3
71,607 + EX31_RS14035 0.45 +2.1
71,608 - EX31_RS14035 0.45 -1.0
71,644 - EX31_RS14035 0.49 -1.5
71,660 + EX31_RS14035 0.51 +1.7
71,661 - EX31_RS14035 0.51 +2.1
71,661 - EX31_RS14035 0.51 -0.7
71,683 + EX31_RS14035 0.53 -2.4
71,684 - EX31_RS14035 0.53 -0.0
71,737 + EX31_RS14035 0.58 -1.0
71,737 + EX31_RS14035 0.58 +1.0
71,737 + EX31_RS14035 0.58 +1.3
71,737 + EX31_RS14035 0.58 -2.2
71,737 + EX31_RS14035 0.58 -1.3
71,738 - EX31_RS14035 0.58 -0.7
71,738 - EX31_RS14035 0.58 +0.3
71,738 - EX31_RS14035 0.58 +0.8
71,738 - EX31_RS14035 0.58 +2.7
71,738 - EX31_RS14035 0.58 +0.9
71,738 - EX31_RS14035 0.58 +1.0
71,738 - EX31_RS14035 0.58 +0.9
71,739 + EX31_RS14035 0.58 -1.0
71,739 + EX31_RS14035 0.58 +1.5
71,739 + EX31_RS14035 0.58 -2.5
71,740 - EX31_RS14035 0.59 -0.2
71,740 - EX31_RS14035 0.59 +0.3
71,740 - EX31_RS14035 0.59 +1.3
71,740 - EX31_RS14035 0.59 -0.3
71,740 - EX31_RS14035 0.59 -1.9
71,740 - EX31_RS14035 0.59 +1.5
71,740 - EX31_RS14035 0.59 -0.3
71,740 - EX31_RS14035 0.59 +3.7
71,741 + EX31_RS14035 0.59 -1.0
71,741 + EX31_RS14035 0.59 -2.6
71,741 + EX31_RS14035 0.59 -0.7
71,741 + EX31_RS14035 0.59 -0.8
71,742 - EX31_RS14035 0.59 -0.2
71,820 - EX31_RS14035 0.66 +3.6
71,820 - EX31_RS14035 0.66 +1.5
71,831 + EX31_RS14035 0.68 -2.6
71,832 - EX31_RS14035 0.68 +0.9
71,832 - EX31_RS14035 0.68 -0.3
71,871 - EX31_RS14035 0.72 +1.0

Or see this region's nucleotide sequence