Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14000 and EX31_RS14005 overlap by 1 nucleotides EX31_RS14005 and EX31_RS14010 are separated by 13 nucleotides
EX31_RS14000: EX31_RS14000 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 62,720 to 64,390
_RS14000
EX31_RS14005: EX31_RS14005 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 64,390 to 65,289
_RS14005
EX31_RS14010: EX31_RS14010 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 65,303 to 67,285
_RS14010
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 63.391 kb on - strand, within EX31_RS14000 at 63.436 kb on - strand, within EX31_RS14000 at 63.449 kb on - strand, within EX31_RS14000 at 63.449 kb on - strand, within EX31_RS14000 at 63.449 kb on - strand, within EX31_RS14000 at 63.455 kb on - strand, within EX31_RS14000 at 63.455 kb on - strand, within EX31_RS14000 at 63.464 kb on - strand, within EX31_RS14000 at 63.464 kb on - strand, within EX31_RS14000 at 63.464 kb on - strand, within EX31_RS14000 at 63.561 kb on - strand, within EX31_RS14000 at 63.604 kb on - strand, within EX31_RS14000 at 63.656 kb on - strand, within EX31_RS14000 at 63.656 kb on - strand, within EX31_RS14000 at 63.676 kb on - strand, within EX31_RS14000 at 63.676 kb on - strand, within EX31_RS14000 at 63.676 kb on - strand, within EX31_RS14000 at 63.676 kb on - strand, within EX31_RS14000 at 63.676 kb on - strand, within EX31_RS14000 at 63.705 kb on - strand, within EX31_RS14000 at 63.800 kb on - strand, within EX31_RS14000 at 63.934 kb on - strand, within EX31_RS14000 at 63.934 kb on - strand, within EX31_RS14000 at 63.991 kb on - strand, within EX31_RS14000 at 63.991 kb on - strand, within EX31_RS14000 at 63.991 kb on - strand, within EX31_RS14000 at 63.991 kb on - strand, within EX31_RS14000 at 63.991 kb on - strand, within EX31_RS14000 at 64.026 kb on + strand, within EX31_RS14000 at 64.027 kb on - strand, within EX31_RS14000 at 64.027 kb on - strand, within EX31_RS14000 at 64.027 kb on - strand, within EX31_RS14000 at 64.027 kb on - strand, within EX31_RS14000 at 64.027 kb on - strand, within EX31_RS14000 at 64.027 kb on - strand, within EX31_RS14000 at 64.027 kb on - strand, within EX31_RS14000 at 64.045 kb on - strand, within EX31_RS14000 at 64.069 kb on + strand, within EX31_RS14000 at 64.070 kb on - strand, within EX31_RS14000 at 64.070 kb on - strand, within EX31_RS14000 at 64.070 kb on - strand, within EX31_RS14000 at 64.070 kb on - strand, within EX31_RS14000 at 64.070 kb on - strand, within EX31_RS14000 at 64.070 kb on - strand, within EX31_RS14000 at 64.092 kb on - strand, within EX31_RS14000 at 64.172 kb on - strand, within EX31_RS14000 at 64.172 kb on - strand, within EX31_RS14000 at 64.210 kb on - strand, within EX31_RS14000 at 64.210 kb on - strand, within EX31_RS14000 at 64.210 kb on - strand, within EX31_RS14000 at 64.279 kb on - strand at 64.316 kb on - strand at 64.316 kb on - strand at 64.376 kb on - strand at 64.376 kb on - strand at 64.418 kb on - strand at 64.418 kb on - strand at 64.474 kb on - strand at 64.474 kb on - strand at 64.474 kb on - strand at 64.597 kb on - strand, within EX31_RS14005 at 64.689 kb on - strand, within EX31_RS14005 at 64.689 kb on - strand, within EX31_RS14005 at 64.782 kb on - strand, within EX31_RS14005 at 65.066 kb on - strand, within EX31_RS14005 at 65.071 kb on - strand, within EX31_RS14005 at 65.098 kb on - strand, within EX31_RS14005 at 65.194 kb on - strand, within EX31_RS14005 at 65.369 kb on - strand at 65.448 kb on + strand at 65.461 kb on - strand at 65.463 kb on + strand at 65.464 kb on - strand at 65.464 kb on - strand at 65.464 kb on - strand at 65.464 kb on - strand at 65.464 kb on - strand at 65.464 kb on - strand at 65.579 kb on - strand, within EX31_RS14010 at 65.597 kb on - strand, within EX31_RS14010 at 65.597 kb on - strand, within EX31_RS14010 at 65.600 kb on - strand, within EX31_RS14010 at 65.600 kb on - strand, within EX31_RS14010 at 65.616 kb on - strand, within EX31_RS14010 at 65.616 kb on - strand, within EX31_RS14010 at 65.616 kb on - strand, within EX31_RS14010 at 65.616 kb on - strand, within EX31_RS14010 at 65.616 kb on - strand, within EX31_RS14010 at 65.616 kb on - strand, within EX31_RS14010 at 65.616 kb on - strand, within EX31_RS14010 at 65.616 kb on - strand, within EX31_RS14010 at 65.735 kb on - strand, within EX31_RS14010 at 66.005 kb on - strand, within EX31_RS14010 at 66.005 kb on - strand, within EX31_RS14010 at 66.005 kb on - strand, within EX31_RS14010 at 66.019 kb on - strand, within EX31_RS14010 at 66.019 kb on - strand, within EX31_RS14010 at 66.019 kb on - strand, within EX31_RS14010 at 66.072 kb on - strand, within EX31_RS14010 at 66.094 kb on - strand, within EX31_RS14010 at 66.154 kb on - strand, within EX31_RS14010 at 66.182 kb on - strand, within EX31_RS14010 at 66.256 kb on - strand, within EX31_RS14010
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 63,391 - EX31_RS14000 0.40 +0.0 63,436 - EX31_RS14000 0.43 +3.6 63,449 - EX31_RS14000 0.44 -2.2 63,449 - EX31_RS14000 0.44 -1.4 63,449 - EX31_RS14000 0.44 +0.3 63,455 - EX31_RS14000 0.44 +0.3 63,455 - EX31_RS14000 0.44 +2.5 63,464 - EX31_RS14000 0.45 +2.9 63,464 - EX31_RS14000 0.45 -0.3 63,464 - EX31_RS14000 0.45 -1.1 63,561 - EX31_RS14000 0.50 -2.8 63,604 - EX31_RS14000 0.53 +0.5 63,656 - EX31_RS14000 0.56 -0.3 63,656 - EX31_RS14000 0.56 +2.3 63,676 - EX31_RS14000 0.57 +1.9 63,676 - EX31_RS14000 0.57 +1.7 63,676 - EX31_RS14000 0.57 +1.8 63,676 - EX31_RS14000 0.57 -1.9 63,676 - EX31_RS14000 0.57 +0.1 63,705 - EX31_RS14000 0.59 -1.0 63,800 - EX31_RS14000 0.65 +0.4 63,934 - EX31_RS14000 0.73 +0.6 63,934 - EX31_RS14000 0.73 -0.3 63,991 - EX31_RS14000 0.76 +1.1 63,991 - EX31_RS14000 0.76 +0.7 63,991 - EX31_RS14000 0.76 +1.8 63,991 - EX31_RS14000 0.76 -2.7 63,991 - EX31_RS14000 0.76 -2.4 64,026 + EX31_RS14000 0.78 -0.3 64,027 - EX31_RS14000 0.78 -0.1 64,027 - EX31_RS14000 0.78 +2.3 64,027 - EX31_RS14000 0.78 +0.3 64,027 - EX31_RS14000 0.78 -0.8 64,027 - EX31_RS14000 0.78 +2.6 64,027 - EX31_RS14000 0.78 -2.6 64,027 - EX31_RS14000 0.78 -0.7 64,045 - EX31_RS14000 0.79 -0.7 64,069 + EX31_RS14000 0.81 -1.7 64,070 - EX31_RS14000 0.81 -2.3 64,070 - EX31_RS14000 0.81 +0.8 64,070 - EX31_RS14000 0.81 -2.0 64,070 - EX31_RS14000 0.81 -1.8 64,070 - EX31_RS14000 0.81 -0.4 64,070 - EX31_RS14000 0.81 +2.7 64,092 - EX31_RS14000 0.82 +2.7 64,172 - EX31_RS14000 0.87 +0.1 64,172 - EX31_RS14000 0.87 +0.2 64,210 - EX31_RS14000 0.89 +1.9 64,210 - EX31_RS14000 0.89 -0.0 64,210 - EX31_RS14000 0.89 +0.6 64,279 - +1.3 64,316 - -0.7 64,316 - +0.7 64,376 - +1.5 64,376 - -1.7 64,418 - +2.3 64,418 - +1.3 64,474 - -0.7 64,474 - -1.0 64,474 - +1.7 64,597 - EX31_RS14005 0.23 -2.3 64,689 - EX31_RS14005 0.33 +0.1 64,689 - EX31_RS14005 0.33 +0.3 64,782 - EX31_RS14005 0.44 +0.1 65,066 - EX31_RS14005 0.75 -1.0 65,071 - EX31_RS14005 0.76 -0.7 65,098 - EX31_RS14005 0.79 -0.4 65,194 - EX31_RS14005 0.89 -2.0 65,369 - -0.2 65,448 + -0.3 65,461 - +0.6 65,463 + +1.6 65,464 - +1.0 65,464 - +0.8 65,464 - +1.2 65,464 - -1.9 65,464 - +1.3 65,464 - +0.5 65,579 - EX31_RS14010 0.14 -0.6 65,597 - EX31_RS14010 0.15 -1.7 65,597 - EX31_RS14010 0.15 +1.2 65,600 - EX31_RS14010 0.15 -1.3 65,600 - EX31_RS14010 0.15 -0.5 65,616 - EX31_RS14010 0.16 +1.3 65,616 - EX31_RS14010 0.16 +0.9 65,616 - EX31_RS14010 0.16 -0.5 65,616 - EX31_RS14010 0.16 -0.2 65,616 - EX31_RS14010 0.16 +2.9 65,616 - EX31_RS14010 0.16 +1.6 65,616 - EX31_RS14010 0.16 -0.4 65,616 - EX31_RS14010 0.16 +1.5 65,735 - EX31_RS14010 0.22 -2.4 66,005 - EX31_RS14010 0.35 +0.2 66,005 - EX31_RS14010 0.35 +0.3 66,005 - EX31_RS14010 0.35 -0.1 66,019 - EX31_RS14010 0.36 -2.3 66,019 - EX31_RS14010 0.36 +0.7 66,019 - EX31_RS14010 0.36 -0.4 66,072 - EX31_RS14010 0.39 +0.4 66,094 - EX31_RS14010 0.40 -2.5 66,154 - EX31_RS14010 0.43 +2.6 66,182 - EX31_RS14010 0.44 +1.0 66,256 - EX31_RS14010 0.48 +1.7
Or see this region's nucleotide sequence