Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13720 and EX31_RS13725 are separated by 307 nucleotides EX31_RS13725 and EX31_RS13730 are separated by 558 nucleotides
EX31_RS13720: EX31_RS13720 - AraC family transcriptional regulator, at 3,115 to 4,146
_RS13720
EX31_RS13725: EX31_RS13725 - hypothetical protein, at 4,454 to 4,723
_RS13725
EX31_RS13730: EX31_RS13730 - phosphodiesterase, at 5,282 to 6,955
_RS13730
Position (kb) 4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.464 kb on + strand, within EX31_RS13720 at 3.464 kb on + strand, within EX31_RS13720 at 3.465 kb on - strand, within EX31_RS13720 at 3.465 kb on - strand, within EX31_RS13720 at 3.580 kb on + strand, within EX31_RS13720 at 3.581 kb on - strand, within EX31_RS13720 at 3.694 kb on - strand, within EX31_RS13720 at 3.726 kb on + strand, within EX31_RS13720 at 3.726 kb on + strand, within EX31_RS13720 at 3.729 kb on + strand, within EX31_RS13720 at 3.730 kb on - strand, within EX31_RS13720 at 3.730 kb on - strand, within EX31_RS13720 at 3.730 kb on - strand, within EX31_RS13720 at 3.735 kb on - strand, within EX31_RS13720 at 3.774 kb on - strand, within EX31_RS13720 at 3.787 kb on - strand, within EX31_RS13720 at 3.801 kb on + strand, within EX31_RS13720 at 3.802 kb on - strand, within EX31_RS13720 at 4.100 kb on + strand at 4.229 kb on - strand at 4.265 kb on + strand at 4.266 kb on - strand at 4.266 kb on - strand at 4.266 kb on - strand at 4.267 kb on + strand at 4.307 kb on + strand at 4.345 kb on - strand at 4.375 kb on + strand at 4.376 kb on - strand at 4.376 kb on - strand at 4.492 kb on + strand, within EX31_RS13725 at 4.534 kb on + strand, within EX31_RS13725 at 4.534 kb on + strand, within EX31_RS13725 at 4.534 kb on + strand, within EX31_RS13725 at 4.534 kb on + strand, within EX31_RS13725 at 4.534 kb on + strand, within EX31_RS13725 at 4.534 kb on + strand, within EX31_RS13725 at 4.534 kb on + strand, within EX31_RS13725 at 4.535 kb on - strand, within EX31_RS13725 at 4.535 kb on - strand, within EX31_RS13725 at 4.535 kb on - strand, within EX31_RS13725 at 4.535 kb on - strand, within EX31_RS13725 at 4.535 kb on - strand, within EX31_RS13725 at 4.535 kb on - strand, within EX31_RS13725 at 4.594 kb on + strand, within EX31_RS13725 at 4.640 kb on + strand, within EX31_RS13725 at 4.641 kb on - strand, within EX31_RS13725 at 4.660 kb on + strand, within EX31_RS13725 at 4.784 kb on - strand at 4.788 kb on + strand at 4.788 kb on + strand at 4.866 kb on + strand at 4.902 kb on + strand at 4.918 kb on - strand at 4.955 kb on + strand at 5.024 kb on + strand at 5.112 kb on - strand at 5.121 kb on - strand at 5.125 kb on + strand at 5.126 kb on - strand at 5.126 kb on - strand at 5.272 kb on + strand at 5.276 kb on + strand at 5.277 kb on - strand at 5.277 kb on - strand at 5.287 kb on + strand at 5.287 kb on + strand at 5.293 kb on + strand at 5.351 kb on - strand at 5.569 kb on + strand, within EX31_RS13730 at 5.614 kb on + strand, within EX31_RS13730 at 5.614 kb on + strand, within EX31_RS13730 at 5.615 kb on - strand, within EX31_RS13730 at 5.617 kb on + strand, within EX31_RS13730 at 5.679 kb on + strand, within EX31_RS13730 at 5.679 kb on + strand, within EX31_RS13730 at 5.679 kb on + strand, within EX31_RS13730 at 5.679 kb on + strand, within EX31_RS13730 at 5.680 kb on - strand, within EX31_RS13730 at 5.680 kb on - strand, within EX31_RS13730
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 3,464 + EX31_RS13720 0.34 -1.3 3,464 + EX31_RS13720 0.34 -2.2 3,465 - EX31_RS13720 0.34 -2.6 3,465 - EX31_RS13720 0.34 +0.3 3,580 + EX31_RS13720 0.45 -0.3 3,581 - EX31_RS13720 0.45 +0.4 3,694 - EX31_RS13720 0.56 -0.3 3,726 + EX31_RS13720 0.59 +2.3 3,726 + EX31_RS13720 0.59 -1.5 3,729 + EX31_RS13720 0.59 +1.0 3,730 - EX31_RS13720 0.60 +0.3 3,730 - EX31_RS13720 0.60 +0.1 3,730 - EX31_RS13720 0.60 +0.9 3,735 - EX31_RS13720 0.60 -0.3 3,774 - EX31_RS13720 0.64 -2.2 3,787 - EX31_RS13720 0.65 -1.0 3,801 + EX31_RS13720 0.66 -2.2 3,802 - EX31_RS13720 0.67 +1.9 4,100 + +1.3 4,229 - -0.7 4,265 + -0.7 4,266 - -1.3 4,266 - -1.5 4,266 - -2.3 4,267 + +2.7 4,307 + -2.6 4,345 - -0.3 4,375 + -2.5 4,376 - -0.5 4,376 - +0.3 4,492 + EX31_RS13725 0.14 +1.3 4,534 + EX31_RS13725 0.30 +2.3 4,534 + EX31_RS13725 0.30 -0.3 4,534 + EX31_RS13725 0.30 -0.7 4,534 + EX31_RS13725 0.30 -2.8 4,534 + EX31_RS13725 0.30 -0.3 4,534 + EX31_RS13725 0.30 +2.5 4,534 + EX31_RS13725 0.30 +0.8 4,535 - EX31_RS13725 0.30 +1.9 4,535 - EX31_RS13725 0.30 +2.9 4,535 - EX31_RS13725 0.30 +1.3 4,535 - EX31_RS13725 0.30 +0.3 4,535 - EX31_RS13725 0.30 -1.5 4,535 - EX31_RS13725 0.30 -1.9 4,594 + EX31_RS13725 0.52 +2.9 4,640 + EX31_RS13725 0.69 +2.6 4,641 - EX31_RS13725 0.69 +2.3 4,660 + EX31_RS13725 0.76 +3.0 4,784 - +0.3 4,788 + +0.3 4,788 + +1.3 4,866 + +2.4 4,902 + +0.2 4,918 - -1.3 4,955 + +0.3 5,024 + +1.9 5,112 - -0.3 5,121 - +1.4 5,125 + -1.9 5,126 - +0.3 5,126 - +0.3 5,272 + -0.7 5,276 + +0.3 5,277 - -2.3 5,277 - +1.3 5,287 + -1.9 5,287 + -0.3 5,293 + +1.0 5,351 - -1.0 5,569 + EX31_RS13730 0.17 -2.2 5,614 + EX31_RS13730 0.20 +1.1 5,614 + EX31_RS13730 0.20 -0.3 5,615 - EX31_RS13730 0.20 +1.5 5,617 + EX31_RS13730 0.20 +0.3 5,679 + EX31_RS13730 0.24 -0.3 5,679 + EX31_RS13730 0.24 +1.5 5,679 + EX31_RS13730 0.24 -1.0 5,679 + EX31_RS13730 0.24 +1.4 5,680 - EX31_RS13730 0.24 +1.5 5,680 - EX31_RS13730 0.24 +0.3
Or see this region's nucleotide sequence