Strain Fitness in Rahnella sp. WP5 around EX31_RS12350

Experiment: NLDM_metabolites (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NLDM_metabolites (C)
138,630	+		EX31_RS12335	0.32	-2.3
138,630	+		EX31_RS12335	0.32	-1.5
138,631	-		EX31_RS12335	0.32	-1.2
138,631	-		EX31_RS12335	0.32	-0.9
138,634	+		EX31_RS12335	0.33	+0.6
138,634	+		EX31_RS12335	0.33	-3.2
138,634	+		EX31_RS12335	0.33	-0.1
138,634	+		EX31_RS12335	0.33	+0.9
138,634	+		EX31_RS12335	0.33	+3.1
138,634	+		EX31_RS12335	0.33	-2.1
138,634	+		EX31_RS12335	0.33	-0.4
138,634	+		EX31_RS12335	0.33	-1.9
138,634	+		EX31_RS12335	0.33	-0.4
138,636	+		EX31_RS12335	0.34	-1.5
138,687	-		EX31_RS12335	0.48	+1.6
138,689	+		EX31_RS12335	0.49	-1.2
138,689	+		EX31_RS12335	0.49	+0.1
138,699	+		EX31_RS12335	0.52	+0.9
138,817	+		EX31_RS12335	0.85	-1.8
138,818	-		EX31_RS12335	0.86	-0.1
138,818	-		EX31_RS12335	0.86	+0.8
138,852	+				+1.4
138,853	-				-2.7
138,853	-				-0.1
138,861	+				+0.6
138,861	+				+1.1
138,861	+				-2.4
138,861	+				+0.9
138,861	+				-0.4
138,866	-				+1.7
138,892	+				+0.3
138,893	-				+2.1
138,893	-				+1.2
138,893	-				+1.3
138,924	+				-0.2
138,924	+				-0.5
138,924	+				-1.5
138,924	+				+2.1
138,924	+				+1.3
138,924	+				+0.6
138,924	+				-2.2
138,924	+				+2.5
138,924	+				+1.3
138,924	+				-2.4
138,925	-				+1.2
138,925	-				-1.7
138,928	-				-1.5
138,928	-				+1.9
138,949	-				+2.4
139,027	+		EX31_RS12340	0.31	-0.4
139,027	+		EX31_RS12340	0.31	+1.6
139,027	+		EX31_RS12340	0.31	-0.4
139,027	+		EX31_RS12340	0.31	-1.2
139,028	-		EX31_RS12340	0.31	+0.5
139,072	+		EX31_RS12340	0.43	+0.8
139,072	+		EX31_RS12340	0.43	-0.4
139,124	+		EX31_RS12340	0.57	+1.2
139,125	-		EX31_RS12340	0.58	+0.6
139,130	+		EX31_RS12340	0.59	+0.9
139,131	-		EX31_RS12340	0.59	-2.2
139,132	+		EX31_RS12340	0.60	-2.6
139,132	+		EX31_RS12340	0.60	+1.8
139,133	-		EX31_RS12340	0.60	+2.1
139,133	-		EX31_RS12340	0.60	+0.8
139,133	-		EX31_RS12340	0.60	+0.1
139,138	+		EX31_RS12340	0.61	-0.1
139,138	+		EX31_RS12340	0.61	-2.1
139,180	+		EX31_RS12340	0.73	+0.3
139,181	-		EX31_RS12340	0.73	-0.2
139,194	+		EX31_RS12340	0.77	-0.7
139,194	+		EX31_RS12340	0.77	+0.3
139,195	-		EX31_RS12340	0.77	-0.4
139,200	+		EX31_RS12340	0.78	-0.9
139,213	+		EX31_RS12340	0.82	+0.8
139,253	+				+0.1
139,253	+				+0.4
139,253	+				+2.1
139,253	+				+1.5
139,255	+				+0.6
139,255	+				+0.6
139,255	+				-3.7
139,265	+				+1.2
139,266	-				+1.7
139,266	-				-1.7
139,266	-				+0.3
139,292	+				-1.3
139,403	+		EX31_RS12345	0.41	-1.3
139,403	+		EX31_RS12345	0.41	+1.1
139,403	+		EX31_RS12345	0.41	+3.2
139,412	+		EX31_RS12345	0.44	+0.3
139,412	+		EX31_RS12345	0.44	-0.8
139,413	-		EX31_RS12345	0.45	-3.1
139,433	+		EX31_RS12345	0.51	+3.2
139,433	+		EX31_RS12345	0.51	+0.1
139,436	+		EX31_RS12345	0.52	+0.6
139,504	+		EX31_RS12345	0.75	+0.6
139,590	-				+1.6
139,590	-				-0.6
139,592	-				-1.4
139,604	+				-1.8
139,605	-				+1.3
139,606	+				+1.2
139,606	+				+1.0
139,606	+				-0.4
139,607	-				+0.6
139,607	-				+1.0
139,607	-				-1.5
139,611	-				+1.1
139,627	+				-1.4
139,669	+				+0.4
139,669	+				+1.5
139,688	+				-2.2
139,688	+				+0.4
139,688	+				+0.4
139,688	+				+0.9
139,688	+				-2.4
139,688	+				-2.4
139,689	-		EX31_RS12350	0.10	+2.4
139,689	-		EX31_RS12350	0.10	-2.7
139,689	-		EX31_RS12350	0.10	-0.4
139,744	+		EX31_RS12350	0.17	-2.1
139,745	-		EX31_RS12350	0.17	-2.2
139,896	-		EX31_RS12350	0.37	-0.5
139,992	-		EX31_RS12350	0.49	+1.2
139,992	-		EX31_RS12350	0.49	+0.7
140,139	-		EX31_RS12350	0.68	-0.9
140,139	-		EX31_RS12350	0.68	-1.2
140,385	+				-1.4
140,385	+				+0.2
140,385	+				+3.1
140,385	+				-1.9
140,385	+				-1.7
140,385	+				-0.5
140,385	+				-2.2
140,386	-				+1.4
140,386	-				-2.2
140,386	-				-0.4
140,500	+		EX31_RS12355	0.15	-1.7
140,500	+		EX31_RS12355	0.15	+0.1
140,500	+		EX31_RS12355	0.15	-2.1
140,500	+		EX31_RS12355	0.15	+1.2
140,500	+		EX31_RS12355	0.15	+1.1
140,500	+		EX31_RS12355	0.15	-2.7
140,500	+		EX31_RS12355	0.15	-2.6
140,500	+		EX31_RS12355	0.15	+0.6
140,500	+		EX31_RS12355	0.15	-0.2
140,500	+		EX31_RS12355	0.15	+0.6
140,500	+		EX31_RS12355	0.15	-0.3
140,500	+		EX31_RS12355	0.15	+0.6
140,500	+		EX31_RS12355	0.15	-0.5
140,500	+		EX31_RS12355	0.15	+1.5
140,500	+		EX31_RS12355	0.15	-3.6
140,500	+		EX31_RS12355	0.15	+1.8
140,500	+		EX31_RS12355	0.15	+1.5
140,500	+		EX31_RS12355	0.15	-1.8
140,500	+		EX31_RS12355	0.15	-1.8
140,500	+		EX31_RS12355	0.15	+0.7
140,500	+		EX31_RS12355	0.15	+0.2
140,500	+		EX31_RS12355	0.15	+0.7
140,500	+		EX31_RS12355	0.15	+1.2
140,500	+		EX31_RS12355	0.15	+0.6
140,500	+		EX31_RS12355	0.15	-0.8
140,500	+		EX31_RS12355	0.15	+1.4
140,501	-		EX31_RS12355	0.15	+1.1
140,501	-		EX31_RS12355	0.15	-2.4
140,501	-		EX31_RS12355	0.15	-1.7
140,501	-		EX31_RS12355	0.15	-1.3
140,501	-		EX31_RS12355	0.15	+2.0
140,501	-		EX31_RS12355	0.15	+0.6
140,501	-		EX31_RS12355	0.15	+1.5
140,501	-		EX31_RS12355	0.15	+0.3
140,501	-		EX31_RS12355	0.15	+2.6
140,501	-		EX31_RS12355	0.15	-1.2
140,501	-		EX31_RS12355	0.15	-1.4
140,501	-		EX31_RS12355	0.15	+0.1
140,501	-		EX31_RS12355	0.15	+1.3
140,501	-		EX31_RS12355	0.15	-1.8
140,501	-		EX31_RS12355	0.15	-0.0
140,501	-		EX31_RS12355	0.15	-0.1
140,501	-		EX31_RS12355	0.15	-0.2
140,501	-		EX31_RS12355	0.15	+1.1
140,501	-		EX31_RS12355	0.15	+0.2
140,501	-		EX31_RS12355	0.15	-3.1
140,501	-		EX31_RS12355	0.15	+2.8
140,501	-		EX31_RS12355	0.15	+0.1
140,501	-		EX31_RS12355	0.15	+0.8
140,501	-		EX31_RS12355	0.15	-2.9
140,501	-		EX31_RS12355	0.15	+2.1
140,501	-		EX31_RS12355	0.15	+1.0
140,501	-		EX31_RS12355	0.15	-2.7
140,501	-		EX31_RS12355	0.15	-2.1
140,501	-		EX31_RS12355	0.15	-0.7
140,501	-		EX31_RS12355	0.15	+0.7
140,501	-		EX31_RS12355	0.15	-2.2
140,501	-		EX31_RS12355	0.15	-2.2
140,501	-		EX31_RS12355	0.15	+1.4
140,501	-		EX31_RS12355	0.15	+1.3
140,501	-		EX31_RS12355	0.15	-1.8
140,503	+		EX31_RS12355	0.16	-1.9
140,503	+		EX31_RS12355	0.16	+0.7
140,503	+		EX31_RS12355	0.16	-1.7
140,503	+		EX31_RS12355	0.16	-0.6
140,503	+		EX31_RS12355	0.16	+0.8
140,503	+		EX31_RS12355	0.16	-2.8
140,504	-		EX31_RS12355	0.16	-0.2
140,504	-		EX31_RS12355	0.16	+0.5
140,509	+		EX31_RS12355	0.17	+0.1
140,509	+		EX31_RS12355	0.17	+0.4
140,509	+		EX31_RS12355	0.17	-1.3
140,509	+		EX31_RS12355	0.17	-1.2
140,510	-		EX31_RS12355	0.17	+1.5
140,526	+		EX31_RS12355	0.19	-1.5
140,543	+		EX31_RS12355	0.22	-2.2
140,543	+		EX31_RS12355	0.22	+0.8
140,544	-		EX31_RS12355	0.22	-2.9
140,544	-		EX31_RS12355	0.22	+1.5
140,544	-		EX31_RS12355	0.22	+1.7
140,544	-		EX31_RS12355	0.22	-0.9
140,578	+		EX31_RS12355	0.27	+1.0
140,579	-		EX31_RS12355	0.27	-2.4
140,721	+		EX31_RS12355	0.49	-1.7
140,722	-		EX31_RS12355	0.50	-1.5
140,722	-		EX31_RS12355	0.50	+0.9
140,757	-		EX31_RS12355	0.55	-1.3
140,778	-		EX31_RS12355	0.58	-2.6
140,788	+		EX31_RS12355	0.60	+0.3
140,789	-		EX31_RS12355	0.60	+0.3
140,789	-		EX31_RS12355	0.60	-0.7
140,789	-		EX31_RS12355	0.60	+1.9
140,808	+		EX31_RS12355	0.63	+0.6
140,808	+		EX31_RS12355	0.63	+1.5
140,809	-		EX31_RS12355	0.63	+0.1
140,835	+		EX31_RS12355	0.67	+0.9
140,835	+		EX31_RS12355	0.67	-0.8
140,901	+		EX31_RS12355	0.77	+0.2
140,968	+		EX31_RS12355	0.88	-0.3
140,968	+		EX31_RS12355	0.88	+0.3
140,968	+		EX31_RS12355	0.88	+1.6
140,968	+		EX31_RS12355	0.88	+0.9
140,969	-		EX31_RS12355	0.88	+1.5
140,969	-		EX31_RS12355	0.88	-1.8
140,969	-		EX31_RS12355	0.88	-2.9
140,969	-		EX31_RS12355	0.88	-0.9
140,969	-		EX31_RS12355	0.88	-1.9
140,969	-		EX31_RS12355	0.88	+1.2
140,969	-		EX31_RS12355	0.88	+1.4
141,046	+				+0.4
141,046	+				-1.5
141,046	+				+1.8
141,047	-				+2.3
141,047	-				-1.8
141,047	-				+1.4
141,047	-				+1.9
141,057	+				-0.1
141,057	+				+1.3
141,057	+				-1.7
141,057	+				-2.1
141,057	+				+1.1
141,058	-				+0.4
141,058	-				+1.9
141,058	-				+1.6
141,058	-				-1.8
141,060	+				+1.1
141,060	+				-0.2
141,060	+				-0.2
141,060	+				-2.0
141,061	-				+1.0
141,061	-				-1.3
141,061	-				-2.1
141,061	-				+1.7
141,061	-				+0.1
141,061	-				-1.4
141,061	-				-1.7
141,079	+				-3.4
141,079	+				+0.8
141,129	+				-1.9
141,129	+				+1.4
141,129	+				+0.3
141,129	+				-1.4
141,129	+				+0.9
141,129	+				-1.2
141,130	-				+0.6
141,130	-				-0.7
141,130	-				+0.6
141,130	-				+1.4
141,130	-				+0.1
141,130	-				+1.7
141,130	-				+0.3
141,130	-				+0.6
141,130	-				+1.0
141,130	-				+1.9
141,130	-				-2.9
141,133	+				+1.9
141,133	+				+0.6
141,133	+				+1.0
141,133	+				-1.2
141,133	+				-1.9
141,133	+				-1.5
141,133	+				-0.3
141,133	+				+0.6
141,134	-				+0.6
141,134	-				+0.2
141,134	-				+0.6
141,134	-				+4.3
141,134	-				-2.9
141,134	-				-2.3
141,134	-				-0.1
141,134	-				+1.3
141,134	-				+0.2
141,140	+				-0.3
141,140	+				+0.8
141,140	+				+0.4
141,141	-				+1.3
141,158	+				-1.2
141,158	+				-2.7
141,159	-				+0.1
141,274	+		EX31_RS12360	0.13	-1.7
141,331	+		EX31_RS12360	0.18	-1.8
141,331	+		EX31_RS12360	0.18	+0.7