Strain Fitness in Rahnella sp. WP5 around EX31_RS11350

Experiment: NLDM_metabolites (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11345 and EX31_RS11350 are separated by 325 nucleotidesEX31_RS11350 and EX31_RS11355 are separated by 10 nucleotidesEX31_RS11355 and EX31_RS11360 are separated by 46 nucleotides EX31_RS11345: EX31_RS11345 - flagellar type III secretion system protein FlhB, at 200,331 to 201,485 _RS11345 EX31_RS11350: EX31_RS11350 - protein phosphatase CheZ, at 201,811 to 202,455 _RS11350 EX31_RS11355: EX31_RS11355 - chemotaxis protein CheY, at 202,466 to 202,855 _RS11355 EX31_RS11360: EX31_RS11360 - chemotaxis response regulator protein-glutamate methylesterase, at 202,902 to 203,951 _RS11360 Position (kb) 201 202 203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 200.987 kb on + strand, within EX31_RS11345at 200.988 kb on - strand, within EX31_RS11345at 200.998 kb on + strand, within EX31_RS11345at 200.998 kb on + strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 200.999 kb on - strand, within EX31_RS11345at 201.075 kb on + strand, within EX31_RS11345at 201.132 kb on - strand, within EX31_RS11345at 201.290 kb on + strand, within EX31_RS11345at 201.291 kb on - strand, within EX31_RS11345at 201.291 kb on - strand, within EX31_RS11345at 201.291 kb on - strand, within EX31_RS11345at 201.517 kb on + strandat 201.517 kb on + strandat 201.518 kb on - strandat 201.568 kb on + strandat 201.568 kb on + strandat 201.569 kb on - strandat 201.569 kb on - strandat 201.569 kb on - strandat 201.569 kb on - strandat 201.569 kb on - strandat 201.569 kb on - strandat 201.569 kb on - strandat 201.569 kb on - strandat 201.569 kb on - strandat 201.606 kb on - strandat 201.638 kb on + strandat 201.660 kb on + strandat 201.661 kb on - strandat 201.661 kb on - strandat 201.696 kb on + strandat 201.716 kb on + strandat 201.791 kb on - strandat 201.842 kb on - strandat 202.074 kb on + strand, within EX31_RS11350at 202.107 kb on - strand, within EX31_RS11350at 202.286 kb on + strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.287 kb on - strand, within EX31_RS11350at 202.377 kb on + strand, within EX31_RS11350at 202.378 kb on - strand, within EX31_RS11350at 202.444 kb on + strandat 202.445 kb on - strandat 202.445 kb on - strandat 202.445 kb on - strandat 202.456 kb on - strandat 202.456 kb on - strandat 202.456 kb on - strandat 202.457 kb on + strandat 202.457 kb on + strandat 202.458 kb on - strandat 202.458 kb on - strandat 202.458 kb on - strandat 202.458 kb on - strandat 202.458 kb on - strandat 202.458 kb on - strandat 202.458 kb on - strandat 202.458 kb on - strandat 202.467 kb on + strandat 202.468 kb on - strandat 202.468 kb on - strandat 202.523 kb on - strand, within EX31_RS11355at 202.539 kb on + strand, within EX31_RS11355at 202.540 kb on - strand, within EX31_RS11355at 202.811 kb on - strand, within EX31_RS11355at 202.861 kb on - strandat 202.864 kb on + strandat 202.865 kb on - strandat 202.865 kb on - strandat 202.865 kb on - strandat 202.865 kb on - strandat 202.907 kb on + strandat 202.907 kb on + strandat 202.907 kb on + strandat 202.908 kb on - strandat 202.911 kb on + strandat 202.911 kb on + strandat 202.912 kb on - strandat 202.912 kb on - strandat 202.912 kb on - strandat 202.912 kb on - strandat 202.912 kb on - strandat 202.930 kb on - strandat 202.930 kb on - strandat 203.013 kb on - strand, within EX31_RS11360at 203.054 kb on - strand, within EX31_RS11360at 203.054 kb on - strand, within EX31_RS11360at 203.054 kb on - strand, within EX31_RS11360at 203.054 kb on - strand, within EX31_RS11360at 203.163 kb on + strand, within EX31_RS11360at 203.164 kb on - strand, within EX31_RS11360at 203.217 kb on - strand, within EX31_RS11360at 203.217 kb on - strand, within EX31_RS11360at 203.217 kb on - strand, within EX31_RS11360at 203.217 kb on - strand, within EX31_RS11360at 203.224 kb on + strand, within EX31_RS11360at 203.225 kb on - strand, within EX31_RS11360at 203.252 kb on + strand, within EX31_RS11360at 203.252 kb on + strand, within EX31_RS11360at 203.252 kb on + strand, within EX31_RS11360at 203.252 kb on + strand, within EX31_RS11360at 203.252 kb on + strand, within EX31_RS11360at 203.253 kb on - strand, within EX31_RS11360at 203.253 kb on - strand, within EX31_RS11360at 203.253 kb on - strand, within EX31_RS11360at 203.253 kb on - strand, within EX31_RS11360at 203.253 kb on - strand, within EX31_RS11360at 203.253 kb on - strand, within EX31_RS11360at 203.253 kb on - strand, within EX31_RS11360at 203.275 kb on + strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.276 kb on - strand, within EX31_RS11360at 203.334 kb on + strand, within EX31_RS11360at 203.334 kb on + strand, within EX31_RS11360at 203.334 kb on + strand, within EX31_RS11360at 203.334 kb on + strand, within EX31_RS11360at 203.335 kb on - strand, within EX31_RS11360at 203.335 kb on - strand, within EX31_RS11360at 203.335 kb on - strand, within EX31_RS11360at 203.335 kb on - strand, within EX31_RS11360at 203.381 kb on + strand, within EX31_RS11360at 203.381 kb on + strand, within EX31_RS11360at 203.382 kb on - strand, within EX31_RS11360at 203.382 kb on - strand, within EX31_RS11360at 203.382 kb on - strand, within EX31_RS11360at 203.382 kb on - strand, within EX31_RS11360at 203.382 kb on - strand, within EX31_RS11360at 203.382 kb on - strand, within EX31_RS11360at 203.382 kb on - strand, within EX31_RS11360at 203.382 kb on - strand, within EX31_RS11360

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_metabolites (C)
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200,987 + EX31_RS11345 0.57 -2.0
200,988 - EX31_RS11345 0.57 +1.7
200,998 + EX31_RS11345 0.58 -1.7
200,998 + EX31_RS11345 0.58 +3.0
200,999 - EX31_RS11345 0.58 +3.7
200,999 - EX31_RS11345 0.58 -1.4
200,999 - EX31_RS11345 0.58 +2.6
200,999 - EX31_RS11345 0.58 -1.7
200,999 - EX31_RS11345 0.58 +0.9
200,999 - EX31_RS11345 0.58 -1.2
200,999 - EX31_RS11345 0.58 +2.2
200,999 - EX31_RS11345 0.58 -1.4
200,999 - EX31_RS11345 0.58 -0.4
200,999 - EX31_RS11345 0.58 +1.2
201,075 + EX31_RS11345 0.64 +1.9
201,132 - EX31_RS11345 0.69 +2.9
201,290 + EX31_RS11345 0.83 -0.2
201,291 - EX31_RS11345 0.83 -2.4
201,291 - EX31_RS11345 0.83 +2.7
201,291 - EX31_RS11345 0.83 -1.8
201,517 + -1.4
201,517 + -0.8
201,518 - -1.7
201,568 + +2.2
201,568 + -2.4
201,569 - +1.3
201,569 - +3.5
201,569 - +2.0
201,569 - +2.0
201,569 - +1.1
201,569 - +0.6
201,569 - +0.4
201,569 - +0.2
201,569 - -0.4
201,606 - -2.0
201,638 + -1.8
201,660 + +0.6
201,661 - -1.4
201,661 - +1.2
201,696 + +1.3
201,716 + +1.4
201,791 - +2.0
201,842 - +0.9
202,074 + EX31_RS11350 0.41 +2.5
202,107 - EX31_RS11350 0.46 -2.3
202,286 + EX31_RS11350 0.74 -1.2
202,287 - EX31_RS11350 0.74 -1.2
202,287 - EX31_RS11350 0.74 +1.2
202,287 - EX31_RS11350 0.74 +0.0
202,287 - EX31_RS11350 0.74 -1.4
202,287 - EX31_RS11350 0.74 -0.8
202,287 - EX31_RS11350 0.74 -1.2
202,287 - EX31_RS11350 0.74 +3.2
202,287 - EX31_RS11350 0.74 -1.3
202,287 - EX31_RS11350 0.74 -3.2
202,377 + EX31_RS11350 0.88 -2.7
202,378 - EX31_RS11350 0.88 +2.5
202,444 + +0.2
202,445 - -1.2
202,445 - +1.7
202,445 - -0.4
202,456 - -1.8
202,456 - -0.4
202,456 - +0.4
202,457 + +1.2
202,457 + +4.0
202,458 - -1.2
202,458 - +1.4
202,458 - -1.4
202,458 - +0.9
202,458 - +2.0
202,458 - -1.2
202,458 - -1.8
202,458 - +0.2
202,467 + +1.7
202,468 - +1.2
202,468 - -0.8
202,523 - EX31_RS11355 0.15 +2.1
202,539 + EX31_RS11355 0.19 +0.8
202,540 - EX31_RS11355 0.19 -1.2
202,811 - EX31_RS11355 0.88 -2.3
202,861 - +2.5
202,864 + -1.8
202,865 - -1.4
202,865 - -0.8
202,865 - -2.7
202,865 - -1.4
202,907 + -3.0
202,907 + +0.8
202,907 + -2.0
202,908 - -2.7
202,911 + -0.8
202,911 + +2.2
202,912 - -2.3
202,912 - +0.2
202,912 - +0.3
202,912 - +1.2
202,912 - +1.5
202,930 - +2.3
202,930 - +1.1
203,013 - EX31_RS11360 0.11 -1.7
203,054 - EX31_RS11360 0.14 +0.4
203,054 - EX31_RS11360 0.14 -2.9
203,054 - EX31_RS11360 0.14 -0.8
203,054 - EX31_RS11360 0.14 -0.4
203,163 + EX31_RS11360 0.25 -0.8
203,164 - EX31_RS11360 0.25 -0.7
203,217 - EX31_RS11360 0.30 -2.3
203,217 - EX31_RS11360 0.30 -0.8
203,217 - EX31_RS11360 0.30 -2.5
203,217 - EX31_RS11360 0.30 -1.8
203,224 + EX31_RS11360 0.31 -0.8
203,225 - EX31_RS11360 0.31 +0.2
203,252 + EX31_RS11360 0.33 -1.2
203,252 + EX31_RS11360 0.33 -0.8
203,252 + EX31_RS11360 0.33 -0.0
203,252 + EX31_RS11360 0.33 -1.2
203,252 + EX31_RS11360 0.33 +0.1
203,253 - EX31_RS11360 0.33 -2.2
203,253 - EX31_RS11360 0.33 +0.5
203,253 - EX31_RS11360 0.33 +1.2
203,253 - EX31_RS11360 0.33 +3.2
203,253 - EX31_RS11360 0.33 -1.4
203,253 - EX31_RS11360 0.33 -1.3
203,253 - EX31_RS11360 0.33 -1.4
203,275 + EX31_RS11360 0.36 +1.2
203,276 - EX31_RS11360 0.36 -0.4
203,276 - EX31_RS11360 0.36 -0.8
203,276 - EX31_RS11360 0.36 +1.2
203,276 - EX31_RS11360 0.36 -1.2
203,276 - EX31_RS11360 0.36 -1.3
203,276 - EX31_RS11360 0.36 -0.8
203,276 - EX31_RS11360 0.36 +1.3
203,276 - EX31_RS11360 0.36 +1.0
203,276 - EX31_RS11360 0.36 -0.9
203,276 - EX31_RS11360 0.36 -2.2
203,334 + EX31_RS11360 0.41 +0.1
203,334 + EX31_RS11360 0.41 -1.8
203,334 + EX31_RS11360 0.41 -1.7
203,334 + EX31_RS11360 0.41 -0.2
203,335 - EX31_RS11360 0.41 -0.4
203,335 - EX31_RS11360 0.41 +0.0
203,335 - EX31_RS11360 0.41 -1.7
203,335 - EX31_RS11360 0.41 -2.8
203,381 + EX31_RS11360 0.46 -3.2
203,381 + EX31_RS11360 0.46 +0.2
203,382 - EX31_RS11360 0.46 -0.3
203,382 - EX31_RS11360 0.46 -0.8
203,382 - EX31_RS11360 0.46 -0.8
203,382 - EX31_RS11360 0.46 +3.6
203,382 - EX31_RS11360 0.46 -0.4
203,382 - EX31_RS11360 0.46 -1.8
203,382 - EX31_RS11360 0.46 +1.3
203,382 - EX31_RS11360 0.46 +1.6

Or see this region's nucleotide sequence