Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11285 and EX31_RS11290 are separated by 127 nucleotides EX31_RS11290 and EX31_RS11295 are separated by 21 nucleotides EX31_RS11295 and EX31_RS11300 are separated by 34 nucleotides
EX31_RS11285: EX31_RS11285 - flagellar basal body L-ring protein FlgH, at 190,259 to 190,963
_RS11285
EX31_RS11290: EX31_RS11290 - flagellar basal-body rod protein FlgG, at 191,091 to 191,873
_RS11290
EX31_RS11295: EX31_RS11295 - flagellar basal body rod protein FlgF, at 191,895 to 192,650
_RS11295
EX31_RS11300: EX31_RS11300 - flagellar hook protein FlgE, at 192,685 to 193,929
_RS11300
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 190.907 kb on + strand at 190.952 kb on - strand at 191.141 kb on + strand at 191.141 kb on + strand at 191.142 kb on - strand at 191.142 kb on - strand at 191.208 kb on - strand, within EX31_RS11290 at 191.221 kb on + strand, within EX31_RS11290 at 191.222 kb on - strand, within EX31_RS11290 at 191.222 kb on - strand, within EX31_RS11290 at 191.231 kb on - strand, within EX31_RS11290 at 191.534 kb on - strand, within EX31_RS11290 at 191.534 kb on - strand, within EX31_RS11290 at 191.534 kb on - strand, within EX31_RS11290 at 191.645 kb on + strand, within EX31_RS11290 at 191.646 kb on - strand, within EX31_RS11290 at 191.771 kb on + strand, within EX31_RS11290 at 191.772 kb on - strand, within EX31_RS11290 at 191.811 kb on + strand at 191.812 kb on - strand at 191.812 kb on - strand at 191.856 kb on - strand at 191.857 kb on + strand at 191.857 kb on + strand at 191.857 kb on + strand at 191.858 kb on - strand at 191.858 kb on - strand at 191.858 kb on - strand at 191.858 kb on - strand at 191.858 kb on - strand at 191.858 kb on - strand at 191.858 kb on - strand at 191.858 kb on - strand at 191.858 kb on - strand at 192.119 kb on + strand, within EX31_RS11295 at 192.119 kb on + strand, within EX31_RS11295 at 192.119 kb on + strand, within EX31_RS11295 at 192.119 kb on + strand, within EX31_RS11295 at 192.120 kb on - strand, within EX31_RS11295 at 192.120 kb on - strand, within EX31_RS11295 at 192.120 kb on - strand, within EX31_RS11295 at 192.120 kb on - strand, within EX31_RS11295 at 192.355 kb on + strand, within EX31_RS11295 at 192.356 kb on - strand, within EX31_RS11295 at 192.356 kb on - strand, within EX31_RS11295 at 192.405 kb on - strand, within EX31_RS11295 at 192.433 kb on + strand, within EX31_RS11295 at 192.433 kb on + strand, within EX31_RS11295 at 192.456 kb on - strand, within EX31_RS11295 at 192.456 kb on - strand, within EX31_RS11295 at 192.560 kb on + strand, within EX31_RS11295 at 192.561 kb on - strand, within EX31_RS11295 at 192.561 kb on - strand, within EX31_RS11295 at 192.561 kb on - strand, within EX31_RS11295 at 192.634 kb on + strand at 192.634 kb on + strand at 192.635 kb on - strand at 192.639 kb on - strand at 192.639 kb on - strand at 192.687 kb on - strand at 192.753 kb on - strand at 192.757 kb on - strand at 192.987 kb on - strand, within EX31_RS11300 at 192.987 kb on - strand, within EX31_RS11300 at 192.987 kb on - strand, within EX31_RS11300 at 192.987 kb on - strand, within EX31_RS11300 at 193.046 kb on + strand, within EX31_RS11300 at 193.233 kb on + strand, within EX31_RS11300 at 193.234 kb on - strand, within EX31_RS11300 at 193.331 kb on + strand, within EX31_RS11300 at 193.331 kb on + strand, within EX31_RS11300 at 193.332 kb on - strand, within EX31_RS11300 at 193.332 kb on - strand, within EX31_RS11300 at 193.367 kb on + strand, within EX31_RS11300 at 193.367 kb on + strand, within EX31_RS11300 at 193.367 kb on + strand, within EX31_RS11300 at 193.368 kb on - strand, within EX31_RS11300 at 193.368 kb on - strand, within EX31_RS11300 at 193.368 kb on - strand, within EX31_RS11300 at 193.368 kb on - strand, within EX31_RS11300 at 193.388 kb on + strand, within EX31_RS11300 at 193.388 kb on + strand, within EX31_RS11300 at 193.388 kb on + strand, within EX31_RS11300 at 193.388 kb on + strand, within EX31_RS11300 at 193.388 kb on + strand, within EX31_RS11300 at 193.388 kb on + strand, within EX31_RS11300 at 193.388 kb on + strand, within EX31_RS11300 at 193.389 kb on - strand, within EX31_RS11300 at 193.389 kb on - strand, within EX31_RS11300 at 193.389 kb on - strand, within EX31_RS11300 at 193.389 kb on - strand, within EX31_RS11300 at 193.389 kb on - strand, within EX31_RS11300 at 193.389 kb on - strand, within EX31_RS11300 at 193.389 kb on - strand, within EX31_RS11300 at 193.389 kb on - strand, within EX31_RS11300 at 193.394 kb on + strand, within EX31_RS11300 at 193.394 kb on + strand, within EX31_RS11300 at 193.395 kb on - strand, within EX31_RS11300 at 193.395 kb on - strand, within EX31_RS11300 at 193.395 kb on - strand, within EX31_RS11300 at 193.395 kb on - strand, within EX31_RS11300 at 193.612 kb on - strand, within EX31_RS11300 at 193.612 kb on - strand, within EX31_RS11300
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 190,907 + -1.8 190,952 - +0.2 191,141 + -0.4 191,141 + +0.6 191,142 - +0.1 191,142 - +0.7 191,208 - EX31_RS11290 0.15 +0.6 191,221 + EX31_RS11290 0.17 +1.7 191,222 - EX31_RS11290 0.17 -1.2 191,222 - EX31_RS11290 0.17 +1.9 191,231 - EX31_RS11290 0.18 +1.5 191,534 - EX31_RS11290 0.57 +0.7 191,534 - EX31_RS11290 0.57 -1.7 191,534 - EX31_RS11290 0.57 +3.5 191,645 + EX31_RS11290 0.71 +0.9 191,646 - EX31_RS11290 0.71 +0.5 191,771 + EX31_RS11290 0.87 +1.7 191,772 - EX31_RS11290 0.87 +0.7 191,811 + -1.4 191,812 - -1.8 191,812 - -2.8 191,856 - +0.2 191,857 + -1.4 191,857 + -1.4 191,857 + -1.2 191,858 - +2.3 191,858 - +0.4 191,858 - +1.3 191,858 - -0.4 191,858 - +0.1 191,858 - -1.4 191,858 - +0.2 191,858 - +1.2 191,858 - +2.3 192,119 + EX31_RS11295 0.30 +0.2 192,119 + EX31_RS11295 0.30 +2.0 192,119 + EX31_RS11295 0.30 +0.2 192,119 + EX31_RS11295 0.30 +1.7 192,120 - EX31_RS11295 0.30 -0.4 192,120 - EX31_RS11295 0.30 +1.3 192,120 - EX31_RS11295 0.30 -1.7 192,120 - EX31_RS11295 0.30 +1.3 192,355 + EX31_RS11295 0.61 -1.8 192,356 - EX31_RS11295 0.61 +0.8 192,356 - EX31_RS11295 0.61 -0.4 192,405 - EX31_RS11295 0.67 +1.3 192,433 + EX31_RS11295 0.71 +3.5 192,433 + EX31_RS11295 0.71 +2.2 192,456 - EX31_RS11295 0.74 -0.4 192,456 - EX31_RS11295 0.74 +1.7 192,560 + EX31_RS11295 0.88 -1.2 192,561 - EX31_RS11295 0.88 +0.9 192,561 - EX31_RS11295 0.88 +1.6 192,561 - EX31_RS11295 0.88 +1.5 192,634 + +0.7 192,634 + -0.1 192,635 - +2.4 192,639 - +0.3 192,639 - +1.6 192,687 - +1.3 192,753 - +0.4 192,757 - -1.7 192,987 - EX31_RS11300 0.24 -1.4 192,987 - EX31_RS11300 0.24 +1.6 192,987 - EX31_RS11300 0.24 +2.1 192,987 - EX31_RS11300 0.24 -0.8 193,046 + EX31_RS11300 0.29 -2.3 193,233 + EX31_RS11300 0.44 -0.8 193,234 - EX31_RS11300 0.44 +0.3 193,331 + EX31_RS11300 0.52 +3.2 193,331 + EX31_RS11300 0.52 -1.7 193,332 - EX31_RS11300 0.52 +3.3 193,332 - EX31_RS11300 0.52 -1.2 193,367 + EX31_RS11300 0.55 +1.6 193,367 + EX31_RS11300 0.55 +0.2 193,367 + EX31_RS11300 0.55 +1.3 193,368 - EX31_RS11300 0.55 -2.2 193,368 - EX31_RS11300 0.55 +0.9 193,368 - EX31_RS11300 0.55 -2.5 193,368 - EX31_RS11300 0.55 -1.2 193,388 + EX31_RS11300 0.56 +1.2 193,388 + EX31_RS11300 0.56 -1.7 193,388 + EX31_RS11300 0.56 +2.7 193,388 + EX31_RS11300 0.56 +5.3 193,388 + EX31_RS11300 0.56 +2.2 193,388 + EX31_RS11300 0.56 +0.6 193,388 + EX31_RS11300 0.56 -2.3 193,389 - EX31_RS11300 0.57 +2.3 193,389 - EX31_RS11300 0.57 +0.5 193,389 - EX31_RS11300 0.57 +1.7 193,389 - EX31_RS11300 0.57 -1.2 193,389 - EX31_RS11300 0.57 -2.4 193,389 - EX31_RS11300 0.57 -2.8 193,389 - EX31_RS11300 0.57 +2.4 193,389 - EX31_RS11300 0.57 +1.9 193,394 + EX31_RS11300 0.57 +1.2 193,394 + EX31_RS11300 0.57 +0.8 193,395 - EX31_RS11300 0.57 +0.7 193,395 - EX31_RS11300 0.57 +1.7 193,395 - EX31_RS11300 0.57 +0.6 193,395 - EX31_RS11300 0.57 +1.2 193,612 - EX31_RS11300 0.74 -1.7 193,612 - EX31_RS11300 0.74 -0.4
Or see this region's nucleotide sequence