Experiment: NLDM_metabolites (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11115 and EX31_RS11120 are separated by 13 nucleotides EX31_RS11120 and EX31_RS11125 overlap by 4 nucleotides EX31_RS11125 and EX31_RS11130 are separated by 4 nucleotides EX31_RS11130 and EX31_RS11135 are separated by 25 nucleotides
EX31_RS11115: EX31_RS11115 - creatininase family protein, at 153,307 to 154,188
_RS11115
EX31_RS11120: EX31_RS11120 - ABC transporter substrate-binding protein, at 154,202 to 155,185
_RS11120
EX31_RS11125: EX31_RS11125 - ABC transporter ATP-binding protein, at 155,182 to 156,009
_RS11125
EX31_RS11130: EX31_RS11130 - ABC transporter permease, at 156,014 to 156,829
_RS11130
EX31_RS11135: EX31_RS11135 - FAD-binding oxidoreductase, at 156,855 to 158,255
_RS11135
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 154.226 kb on + strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.358 kb on + strand, within EX31_RS11120 at 154.359 kb on - strand, within EX31_RS11120 at 154.519 kb on - strand, within EX31_RS11120 at 154.543 kb on + strand, within EX31_RS11120 at 154.543 kb on + strand, within EX31_RS11120 at 154.613 kb on + strand, within EX31_RS11120 at 154.613 kb on + strand, within EX31_RS11120 at 154.613 kb on + strand, within EX31_RS11120 at 154.613 kb on + strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.614 kb on - strand, within EX31_RS11120 at 154.615 kb on + strand, within EX31_RS11120 at 154.615 kb on + strand, within EX31_RS11120 at 154.615 kb on + strand, within EX31_RS11120 at 154.615 kb on + strand, within EX31_RS11120 at 154.616 kb on - strand, within EX31_RS11120 at 154.616 kb on - strand, within EX31_RS11120 at 154.616 kb on - strand, within EX31_RS11120 at 154.616 kb on - strand, within EX31_RS11120 at 154.677 kb on - strand, within EX31_RS11120 at 154.711 kb on + strand, within EX31_RS11120 at 154.711 kb on + strand, within EX31_RS11120 at 154.711 kb on + strand, within EX31_RS11120 at 154.730 kb on + strand, within EX31_RS11120 at 154.731 kb on - strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.778 kb on + strand, within EX31_RS11120 at 154.779 kb on - strand, within EX31_RS11120 at 154.779 kb on - strand, within EX31_RS11120 at 154.784 kb on + strand, within EX31_RS11120 at 154.784 kb on + strand, within EX31_RS11120 at 154.784 kb on + strand, within EX31_RS11120 at 154.785 kb on - strand, within EX31_RS11120 at 154.785 kb on - strand, within EX31_RS11120 at 154.785 kb on - strand, within EX31_RS11120 at 154.785 kb on - strand, within EX31_RS11120 at 154.828 kb on + strand, within EX31_RS11120 at 154.828 kb on + strand, within EX31_RS11120 at 154.828 kb on + strand, within EX31_RS11120 at 154.829 kb on - strand, within EX31_RS11120 at 154.910 kb on + strand, within EX31_RS11120 at 154.910 kb on + strand, within EX31_RS11120 at 154.942 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.009 kb on + strand, within EX31_RS11120 at 155.010 kb on - strand, within EX31_RS11120 at 155.010 kb on - strand, within EX31_RS11120 at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.144 kb on + strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.145 kb on - strand at 155.146 kb on + strand at 155.146 kb on + strand at 155.177 kb on - strand at 155.513 kb on + strand, within EX31_RS11125 at 155.513 kb on + strand, within EX31_RS11125 at 155.513 kb on + strand, within EX31_RS11125 at 155.514 kb on - strand, within EX31_RS11125 at 155.568 kb on + strand, within EX31_RS11125 at 155.571 kb on + strand, within EX31_RS11125 at 155.571 kb on + strand, within EX31_RS11125 at 156.102 kb on + strand, within EX31_RS11130 at 156.102 kb on + strand, within EX31_RS11130 at 156.102 kb on + strand, within EX31_RS11130 at 156.103 kb on - strand, within EX31_RS11130 at 156.103 kb on - strand, within EX31_RS11130 at 156.103 kb on - strand, within EX31_RS11130 at 156.125 kb on + strand, within EX31_RS11130 at 156.126 kb on - strand, within EX31_RS11130 at 156.126 kb on - strand, within EX31_RS11130 at 156.197 kb on - strand, within EX31_RS11130 at 156.451 kb on + strand, within EX31_RS11130 at 156.498 kb on - strand, within EX31_RS11130 at 156.653 kb on - strand, within EX31_RS11130 at 156.676 kb on - strand, within EX31_RS11130 at 156.854 kb on + strand at 156.854 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_metabolites (C) remove 154,226 + +1.2 154,227 - +1.6 154,227 - -0.8 154,227 - +1.7 154,227 - -0.8 154,227 - -1.7 154,227 - +3.2 154,227 - -0.8 154,227 - -2.5 154,358 + EX31_RS11120 0.16 -2.4 154,359 - EX31_RS11120 0.16 -2.8 154,519 - EX31_RS11120 0.32 +1.3 154,543 + EX31_RS11120 0.35 -1.4 154,543 + EX31_RS11120 0.35 -2.0 154,613 + EX31_RS11120 0.42 +0.4 154,613 + EX31_RS11120 0.42 +1.4 154,613 + EX31_RS11120 0.42 -0.3 154,613 + EX31_RS11120 0.42 -0.4 154,614 - EX31_RS11120 0.42 -0.8 154,614 - EX31_RS11120 0.42 +1.2 154,614 - EX31_RS11120 0.42 -1.8 154,614 - EX31_RS11120 0.42 -2.0 154,614 - EX31_RS11120 0.42 +1.0 154,615 + EX31_RS11120 0.42 +1.2 154,615 + EX31_RS11120 0.42 +0.3 154,615 + EX31_RS11120 0.42 +1.7 154,615 + EX31_RS11120 0.42 +0.8 154,616 - EX31_RS11120 0.42 +0.6 154,616 - EX31_RS11120 0.42 +1.1 154,616 - EX31_RS11120 0.42 +0.2 154,616 - EX31_RS11120 0.42 -1.4 154,677 - EX31_RS11120 0.48 -1.8 154,711 + EX31_RS11120 0.52 -0.2 154,711 + EX31_RS11120 0.52 +1.2 154,711 + EX31_RS11120 0.52 +1.2 154,730 + EX31_RS11120 0.54 -0.4 154,731 - EX31_RS11120 0.54 -1.8 154,778 + EX31_RS11120 0.59 +0.9 154,778 + EX31_RS11120 0.59 -3.1 154,778 + EX31_RS11120 0.59 +1.2 154,778 + EX31_RS11120 0.59 -1.2 154,778 + EX31_RS11120 0.59 -1.8 154,778 + EX31_RS11120 0.59 +1.3 154,779 - EX31_RS11120 0.59 +2.2 154,779 - EX31_RS11120 0.59 -1.7 154,784 + EX31_RS11120 0.59 -0.8 154,784 + EX31_RS11120 0.59 +2.3 154,784 + EX31_RS11120 0.59 -2.2 154,785 - EX31_RS11120 0.59 +1.5 154,785 - EX31_RS11120 0.59 -0.8 154,785 - EX31_RS11120 0.59 -2.2 154,785 - EX31_RS11120 0.59 +0.7 154,828 + EX31_RS11120 0.64 +0.2 154,828 + EX31_RS11120 0.64 +0.3 154,828 + EX31_RS11120 0.64 -1.2 154,829 - EX31_RS11120 0.64 +0.2 154,910 + EX31_RS11120 0.72 +2.6 154,910 + EX31_RS11120 0.72 -0.4 154,942 + EX31_RS11120 0.75 +0.6 155,009 + EX31_RS11120 0.82 +0.2 155,009 + EX31_RS11120 0.82 -1.4 155,009 + EX31_RS11120 0.82 +0.8 155,009 + EX31_RS11120 0.82 +0.6 155,009 + EX31_RS11120 0.82 -1.8 155,009 + EX31_RS11120 0.82 -2.0 155,009 + EX31_RS11120 0.82 -2.4 155,009 + EX31_RS11120 0.82 +2.2 155,009 + EX31_RS11120 0.82 -1.7 155,009 + EX31_RS11120 0.82 -2.0 155,009 + EX31_RS11120 0.82 -1.2 155,009 + EX31_RS11120 0.82 -1.8 155,010 - EX31_RS11120 0.82 +0.9 155,010 - EX31_RS11120 0.82 -1.4 155,144 + -1.4 155,144 + +0.9 155,144 + +2.0 155,144 + -1.2 155,144 + -0.1 155,144 + +1.2 155,144 + -1.4 155,144 + -0.4 155,145 - -0.1 155,145 - +2.3 155,145 - -0.8 155,145 - +0.7 155,145 - -2.4 155,145 - -1.2 155,145 - -0.8 155,146 + -0.3 155,146 + -0.3 155,177 - -0.8 155,513 + EX31_RS11125 0.40 -1.2 155,513 + EX31_RS11125 0.40 -1.2 155,513 + EX31_RS11125 0.40 -0.4 155,514 - EX31_RS11125 0.40 -0.8 155,568 + EX31_RS11125 0.47 -2.0 155,571 + EX31_RS11125 0.47 -0.4 155,571 + EX31_RS11125 0.47 -1.7 156,102 + EX31_RS11130 0.11 -1.8 156,102 + EX31_RS11130 0.11 +1.8 156,102 + EX31_RS11130 0.11 -2.5 156,103 - EX31_RS11130 0.11 +0.8 156,103 - EX31_RS11130 0.11 +0.2 156,103 - EX31_RS11130 0.11 -1.7 156,125 + EX31_RS11130 0.14 -0.4 156,126 - EX31_RS11130 0.14 +4.0 156,126 - EX31_RS11130 0.14 +0.1 156,197 - EX31_RS11130 0.22 -0.4 156,451 + EX31_RS11130 0.54 +1.2 156,498 - EX31_RS11130 0.59 +0.2 156,653 - EX31_RS11130 0.78 +2.2 156,676 - EX31_RS11130 0.81 -1.2 156,854 + -1.4 156,854 + +1.2
Or see this region's nucleotide sequence